Wall clock time and date at job start Mon Mar 30 2020 03:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47148 * 2 1 4 4 C 1.50694 * 109.47270 * 120.00153 * 2 1 3 5 5 H 1.08001 * 119.99991 * 120.00339 * 4 2 1 6 6 C 1.37872 * 120.00374 * 300.00279 * 4 2 1 7 7 N 1.31520 * 119.99718 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00603 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46861 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46992 * 119.99888 * 8 6 4 11 11 H 1.48494 * 109.47492 * 240.00216 * 8 6 4 12 12 N 1.46903 * 109.47327 * 240.00409 * 2 1 3 13 13 C 1.46904 * 110.99932 * 84.99509 * 12 2 1 14 14 H 1.08992 * 109.47335 * 325.00447 * 13 12 2 15 15 C 1.53006 * 109.46673 * 85.00209 * 13 12 2 16 16 O 1.42895 * 109.47036 * 65.00189 * 15 13 12 17 17 C 1.50703 * 109.47209 * 204.99999 * 13 12 2 18 18 C 1.38414 * 122.54017 * 140.00324 * 17 13 12 19 19 C 1.33389 * 114.92523 * 179.97438 * 18 17 13 20 20 S 1.75890 * 109.58996 * 0.02562 * 19 18 17 21 21 C 1.33387 * 122.53858 * 319.71065 * 17 13 12 22 22 H 1.09000 * 109.47074 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47318 * 299.99397 * 1 2 3 24 24 H 1.09003 * 109.47136 * 60.00284 * 1 2 3 25 25 H 0.96999 * 119.99634 * 180.02562 * 7 6 4 26 26 H 1.00895 * 111.00403 * 208.95091 * 12 2 1 27 27 H 1.09001 * 109.47002 * 184.99666 * 15 13 12 28 28 H 1.08993 * 109.46955 * 305.00103 * 15 13 12 29 29 H 0.96700 * 113.99916 * 179.97438 * 16 15 13 30 30 H 1.08011 * 122.53837 * 0.02562 * 18 17 13 31 31 H 1.07998 * 125.20362 * 179.97438 * 19 18 17 32 32 H 1.08007 * 125.20169 * 0.03284 * 21 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.1465 -2.2871 3.6037 10 1 3.1466 -0.1875 4.8164 11 1 1.1662 -1.5869 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 1 1.2576 0.9330 -2.2907 15 6 3.4111 0.9811 -2.3223 16 8 4.4880 0.0614 -2.5130 17 6 1.9786 -0.5674 -3.6260 18 6 1.2432 -0.1298 -4.7139 19 6 1.2562 -0.9482 -5.7671 20 16 2.2397 -2.3605 -5.4044 21 6 2.5931 -1.7388 -3.7975 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7087 1.1610 3.4844 26 1 2.9173 -1.1204 -1.0289 27 1 3.4210 1.7227 -3.1211 28 1 3.5262 1.4811 -1.3607 29 1 5.3627 0.4738 -2.5091 30 1 0.7005 0.8041 -4.7105 31 1 0.7409 -0.7711 -6.6996 32 1 3.2111 -2.2314 -3.0613 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336648643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:13 Heat of formation + Delta-G solvation = -15.942611 kcal Electronic energy + Delta-G solvation = -15393.223727 eV Core-core repulsion = 12866.512260 eV Total energy + Delta-G solvation = -2526.711467 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.69120 -36.29613 -35.12712 -32.56015 -30.05549 -28.21735 -26.60261 -25.11749 -23.96712 -21.36091 -19.54637 -18.33581 -17.64652 -16.67543 -16.32978 -15.17034 -14.79727 -14.40799 -14.13297 -13.46049 -12.86135 -12.58551 -12.48199 -12.30398 -11.94958 -11.64022 -11.30531 -11.08407 -10.88609 -10.72299 -10.47407 -10.25051 -10.13299 -9.97874 -9.60839 -8.83474 -8.48377 -8.37823 -8.00691 -7.23451 -6.03226 -4.08927 1.43155 2.02419 2.34515 3.14234 3.28429 3.36533 3.41279 4.40067 4.59203 5.11834 5.28064 5.42216 5.49214 5.60552 5.69512 5.81740 5.91851 6.12375 6.21400 6.43289 6.77337 6.88140 6.98482 7.14875 7.24197 7.51813 7.78953 7.88012 7.92191 8.28253 8.42907 8.69506 9.02803 9.57102 11.03200 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.035987 B = 0.005954 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.868839 B = 4701.643590 C = 4761.265771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.514 4.514 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.676 5.676 13 C 0.147 3.853 14 H 0.090 0.910 15 C 0.052 3.948 16 O -0.563 6.563 17 C -0.085 4.085 18 C -0.122 4.122 19 C -0.226 4.226 20 S 0.049 5.951 21 C -0.154 4.154 22 H 0.032 0.968 23 H 0.080 0.920 24 H 0.003 0.997 25 H 0.260 0.740 26 H 0.340 0.660 27 H 0.037 0.963 28 H 0.053 0.947 29 H 0.371 0.629 30 H 0.134 0.866 31 H 0.156 0.844 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.576 -0.257 -13.415 13.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.018 0.982 4 C -0.553 4.553 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.307 5.307 13 C 0.034 3.966 14 H 0.108 0.892 15 C -0.028 4.028 16 O -0.367 6.367 17 C -0.097 4.097 18 C -0.154 4.154 19 C -0.361 4.361 20 S 0.311 5.689 21 C -0.289 4.289 22 H 0.051 0.949 23 H 0.099 0.901 24 H 0.022 0.978 25 H 0.070 0.930 26 H 0.159 0.841 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.217 0.783 30 H 0.152 0.848 31 H 0.174 0.826 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.764 -2.142 -14.259 14.681 hybrid contribution 1.014 1.882 1.900 2.861 sum 3.779 -0.260 -12.358 12.926 Atomic orbital electron populations 1.21735 0.97923 0.99450 0.99239 1.19127 0.92508 0.92326 0.85672 0.98211 1.21288 1.31169 1.12452 0.90390 0.92192 1.24912 0.95070 0.95018 0.99028 1.69908 1.36775 1.23015 1.23314 0.86476 0.78610 0.79647 0.82889 1.19748 1.21152 1.20983 1.60744 1.32866 1.31862 1.05273 1.20262 0.94002 0.92935 0.89444 0.89240 1.22907 0.88831 0.91767 0.99282 1.86469 1.16827 1.37311 1.96126 1.18818 0.98593 0.96114 0.96144 1.20104 1.01348 1.01122 0.92792 1.25335 1.08225 0.99032 1.03458 1.84041 1.48585 1.24070 1.12168 1.25297 1.05987 0.99610 0.98022 0.94927 0.90114 0.97767 0.93024 0.84069 0.94439 0.92832 0.78308 0.84831 0.82593 0.81855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.17 37.16 0.34 -2.78 16 2 C 0.21 5.28 2.40 -68.87 -0.17 5.11 16 3 H 0.00 0.01 7.10 -51.93 -0.37 -0.36 16 4 C -0.51 -14.08 8.59 -34.45 -0.30 -14.37 16 5 H 0.06 1.64 7.62 -52.49 -0.40 1.24 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.68 -14.52 5.61 -102.17 -0.57 -15.09 16 13 C 0.15 2.67 2.54 -68.86 -0.18 2.50 16 14 H 0.09 1.66 7.06 -51.93 -0.37 1.30 16 15 C 0.05 0.83 6.68 37.16 0.25 1.08 16 16 O -0.56 -8.47 11.71 -35.23 -0.41 -8.88 16 17 C -0.09 -1.42 4.72 -106.25 -0.50 -1.92 16 18 C -0.12 -1.79 9.95 -41.21 -0.41 -2.20 16 19 C -0.23 -2.99 11.23 29.04 0.33 -2.66 16 20 S 0.05 0.68 23.34 -107.50 -2.51 -1.83 16 21 C -0.15 -2.51 9.53 29.04 0.28 -2.23 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 24 H 0.00 0.08 7.43 -51.93 -0.39 -0.31 16 25 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.34 7.42 7.19 -39.29 -0.28 7.13 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.93 7.37 -51.93 -0.38 0.55 16 29 H 0.37 3.91 9.12 45.56 0.42 4.33 16 30 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.16 2.76 7.77 -52.48 -0.41 2.36 16 LS Contribution 280.39 15.07 4.23 4.23 Total: -1.00 -29.35 280.39 -7.43 -36.78 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -3.32 Total: 9.10 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -0.45 Total: -15.90 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.05 Total: -39.76 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.41 Total: -8.88 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.51 Total: -1.83 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.35 -7.43 -36.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336648643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.838 kcal (2) G-P(sol) polarization free energy of solvation -29.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds