Wall clock time and date at job start Mon Mar 30 2020 03:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47148 * 2 1 4 4 C 1.50694 * 109.47270 * 120.00153 * 2 1 3 5 5 H 1.08001 * 119.99991 * 120.00339 * 4 2 1 6 6 C 1.37872 * 120.00374 * 300.00279 * 4 2 1 7 7 N 1.31520 * 119.99718 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00603 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46861 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46992 * 119.99888 * 8 6 4 11 11 H 1.48494 * 109.47492 * 240.00216 * 8 6 4 12 12 N 1.46903 * 109.47327 * 240.00409 * 2 1 3 13 13 C 1.46904 * 110.99932 * 84.99509 * 12 2 1 14 14 H 1.08992 * 109.47335 * 325.00447 * 13 12 2 15 15 C 1.53006 * 109.46673 * 85.00209 * 13 12 2 16 16 O 1.42895 * 109.47036 * 65.00189 * 15 13 12 17 17 C 1.50703 * 109.47209 * 204.99999 * 13 12 2 18 18 C 1.38414 * 122.54017 * 140.00324 * 17 13 12 19 19 C 1.33389 * 114.92523 * 179.97438 * 18 17 13 20 20 S 1.75890 * 109.58996 * 0.02562 * 19 18 17 21 21 C 1.33387 * 122.53858 * 319.71065 * 17 13 12 22 22 H 1.09000 * 109.47074 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47318 * 299.99397 * 1 2 3 24 24 H 1.09003 * 109.47136 * 60.00284 * 1 2 3 25 25 H 0.96999 * 119.99634 * 180.02562 * 7 6 4 26 26 H 1.00895 * 111.00403 * 208.95091 * 12 2 1 27 27 H 1.09001 * 109.47002 * 184.99666 * 15 13 12 28 28 H 1.08993 * 109.46955 * 305.00103 * 15 13 12 29 29 H 0.96700 * 113.99916 * 179.97438 * 16 15 13 30 30 H 1.08011 * 122.53837 * 0.02562 * 18 17 13 31 31 H 1.07998 * 125.20362 * 179.97438 * 19 18 17 32 32 H 1.08007 * 125.20169 * 0.03284 * 21 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.1465 -2.2871 3.6037 10 1 3.1466 -0.1875 4.8164 11 1 1.1662 -1.5869 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 1 1.2576 0.9330 -2.2907 15 6 3.4111 0.9811 -2.3223 16 8 4.4880 0.0614 -2.5130 17 6 1.9786 -0.5674 -3.6260 18 6 1.2432 -0.1298 -4.7139 19 6 1.2562 -0.9482 -5.7671 20 16 2.2397 -2.3605 -5.4044 21 6 2.5931 -1.7388 -3.7975 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.7087 1.1610 3.4844 26 1 2.9173 -1.1204 -1.0289 27 1 3.4210 1.7227 -3.1211 28 1 3.5262 1.4811 -1.3607 29 1 5.3627 0.4738 -2.5091 30 1 0.7005 0.8041 -4.7105 31 1 0.7409 -0.7711 -6.6996 32 1 3.2111 -2.2314 -3.0613 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336648643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:13 Heat of formation + Delta-G solvation = -36.869745 kcal Electronic energy + Delta-G solvation = -15394.131196 eV Core-core repulsion = 12866.512260 eV Total energy + Delta-G solvation = -2527.618936 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.01745 -37.56878 -36.78865 -34.42109 -31.70994 -29.53407 -28.27199 -27.18722 -25.19789 -22.86989 -21.27140 -19.65630 -18.94953 -18.25207 -17.76473 -16.79312 -16.51233 -15.87193 -15.56751 -14.97457 -14.60788 -13.99808 -13.81665 -13.56755 -13.43177 -13.27953 -12.86874 -12.78507 -12.52358 -12.44113 -12.23028 -12.18595 -11.90860 -11.49994 -10.91370 -10.86305 -10.56747 -9.51412 -9.17701 -8.94588 -8.13276 -6.26325 0.29502 0.91871 1.21007 1.40218 1.42626 1.54132 1.94608 2.41749 3.15406 3.35499 3.79810 4.05937 4.21061 4.37185 4.44944 4.59424 4.64050 4.80891 4.89272 4.94592 5.10713 5.22557 5.25741 5.48733 5.60353 5.68694 5.79055 5.88665 6.23637 6.52568 6.78502 6.92125 7.02935 7.43950 8.92505 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.035987 B = 0.005954 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.868839 B = 4701.643590 C = 4761.265771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.218 3.782 3 H -0.024 1.024 4 C -0.534 4.534 5 H 0.054 0.946 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.279 1.279 11 H -0.280 1.280 12 N -0.676 5.676 13 C 0.143 3.857 14 H 0.082 0.918 15 C 0.062 3.938 16 O -0.573 6.573 17 C -0.094 4.094 18 C -0.142 4.142 19 C -0.212 4.212 20 S 0.083 5.917 21 C -0.180 4.180 22 H 0.023 0.977 23 H 0.058 0.942 24 H 0.022 0.978 25 H 0.262 0.738 26 H 0.336 0.664 27 H 0.063 0.937 28 H 0.033 0.967 29 H 0.391 0.609 30 H 0.150 0.850 31 H 0.189 0.811 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.813 -0.641 -14.742 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.110 3.890 3 H -0.006 1.006 4 C -0.572 4.572 5 H 0.072 0.928 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.206 1.206 12 N -0.306 5.306 13 C 0.030 3.970 14 H 0.100 0.900 15 C -0.018 4.018 16 O -0.380 6.380 17 C -0.106 4.106 18 C -0.173 4.173 19 C -0.347 4.347 20 S 0.345 5.655 21 C -0.315 4.315 22 H 0.042 0.958 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.155 0.845 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.240 0.760 30 H 0.167 0.833 31 H 0.207 0.793 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.021 -2.523 -15.609 16.097 hybrid contribution 0.958 1.988 2.215 3.127 sum 3.979 -0.534 -13.393 13.982 Atomic orbital electron populations 1.21564 0.97961 0.98661 0.99024 1.18899 0.92394 0.91061 0.86658 1.00606 1.21577 1.31407 1.12516 0.91734 0.92808 1.25677 0.95196 0.95689 1.01850 1.70020 1.37482 1.24056 1.24065 0.85479 0.78112 0.78608 0.79243 1.19390 1.20477 1.20613 1.60651 1.32665 1.32484 1.04834 1.20296 0.95052 0.92717 0.88963 0.90041 1.22666 0.88241 0.91774 0.99096 1.86429 1.17885 1.37696 1.96016 1.18795 0.99573 0.96282 0.95959 1.20231 1.02048 1.02418 0.92622 1.25770 1.06904 0.97897 1.04115 1.83915 1.48048 1.23786 1.09731 1.25296 1.06519 1.00045 0.99670 0.95794 0.92339 0.95891 0.92839 0.84518 0.91882 0.94922 0.75992 0.83270 0.79346 0.83251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.76 9.17 71.98 0.66 -5.10 16 2 C 0.22 11.16 2.40 44.17 0.11 11.26 16 3 H -0.02 -1.30 7.10 -2.39 -0.02 -1.32 16 4 C -0.53 -29.69 8.59 25.60 0.22 -29.47 16 5 H 0.05 2.99 7.62 -2.91 -0.02 2.97 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -52.68 11.32 21.45 0.24 -52.43 16 8 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 N -0.68 -29.45 5.61 -477.15 -2.68 -32.13 16 13 C 0.14 5.17 2.54 44.17 0.11 5.28 16 14 H 0.08 3.03 7.06 -2.39 -0.02 3.01 16 15 C 0.06 1.96 6.68 71.98 0.48 2.44 16 16 O -0.57 -16.86 11.71 -148.98 -1.74 -18.60 16 17 C -0.09 -3.04 4.72 -20.92 -0.10 -3.14 16 18 C -0.14 -3.86 9.95 21.21 0.21 -3.65 16 19 C -0.21 -4.93 11.23 66.72 0.75 -4.18 16 20 S 0.08 2.08 23.34 -56.49 -1.32 0.76 16 21 C -0.18 -5.71 9.53 66.72 0.64 -5.08 16 22 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 24 H 0.02 1.02 7.43 -2.39 -0.02 1.00 16 25 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.34 14.98 7.19 -89.70 -0.65 14.33 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.03 1.16 7.37 -2.39 -0.02 1.14 16 29 H 0.39 7.78 9.12 -74.06 -0.68 7.10 16 30 H 0.15 3.48 8.06 -2.90 -0.02 3.46 16 31 H 0.19 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.15 5.09 7.77 -2.91 -0.02 5.07 16 Total: -1.00 -62.31 280.39 -0.13 -62.44 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.18 Total: 24.46 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 3.53 Total: -30.35 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -2.43 Total: -84.56 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -1.74 Total: -18.60 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.32 Total: 0.76 kcal Total: -62.31 -0.13 -62.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336648643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.565 kcal (2) G-P(sol) polarization free energy of solvation -62.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds