Wall clock time and date at job start Mon Mar 30 2020 03:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.31025 * 120.00422 * 2 1 4 4 N 1.35688 * 125.60089 * 179.97438 * 3 2 1 5 5 H 0.97006 * 122.73512 * 0.02626 * 4 3 2 6 6 C 1.36586 * 114.52991 * 180.02562 * 4 3 2 7 7 C 1.50705 * 122.01005 * 179.97438 * 6 4 3 8 8 N 1.46907 * 109.46927 * 85.00164 * 7 6 4 9 9 C 1.46901 * 111.00044 * 66.04548 * 8 7 6 10 10 C 1.46899 * 110.99781 * 190.00165 * 8 7 6 11 11 C 1.50696 * 109.47192 * 169.99978 * 10 8 7 12 12 H 1.08004 * 119.99955 * 0.02562 * 11 10 8 13 13 C 1.37879 * 120.00393 * 179.97438 * 11 10 8 14 14 N 1.31517 * 119.99603 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00327 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47232 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46928 * 119.99849 * 15 13 11 18 18 H 1.48501 * 109.47188 * 240.00230 * 15 13 11 19 19 C 1.31050 * 115.98272 * 0.02562 * 6 4 3 20 20 S 1.75911 * 109.96622 * 359.73630 * 19 6 4 21 21 H 1.09002 * 109.47391 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46813 * 59.99934 * 1 2 3 23 23 H 1.09004 * 109.47041 * 300.00061 * 1 2 3 24 24 H 1.08998 * 109.46878 * 205.00134 * 7 6 4 25 25 H 1.08996 * 109.47131 * 325.00131 * 7 6 4 26 26 H 1.09000 * 109.47156 * 59.99791 * 9 8 7 27 27 H 1.08999 * 109.46597 * 179.97438 * 9 8 7 28 28 H 1.08997 * 109.47021 * 300.00324 * 9 8 7 29 29 H 1.09001 * 109.46868 * 290.00217 * 10 8 7 30 30 H 1.08999 * 109.47289 * 49.99483 * 10 8 7 31 31 H 0.96999 * 119.99662 * 179.97438 * 14 13 11 32 32 H 1.08001 * 125.01990 * 180.02562 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1202 1.1347 0.0000 4 7 3.4706 1.2670 0.0005 5 1 4.0723 0.5060 0.0005 6 6 3.9138 2.5590 0.0009 7 6 5.3818 2.8999 0.0021 8 7 5.8871 2.8933 -1.3773 9 6 5.2782 3.9726 -2.1663 10 6 7.3529 2.9860 -1.4014 11 6 7.8495 2.7309 -2.8011 12 1 7.1464 2.5213 -3.5937 13 6 9.2013 2.7662 -3.0703 14 7 10.0573 3.0230 -2.1054 15 14 9.8168 2.4493 -4.8052 16 1 8.6612 2.1874 -5.7004 17 1 10.5596 3.6395 -5.2920 18 1 10.7189 1.2696 -4.8026 19 6 2.9858 3.4843 0.0013 20 16 1.3930 2.7376 -0.0064 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 5.5246 3.8893 0.4366 25 1 5.9257 2.1621 0.5918 26 1 5.5164 4.9340 -1.7114 27 1 5.6701 3.9449 -3.1830 28 1 4.1966 3.8398 -2.1896 29 1 7.6591 3.9826 -1.0832 30 1 7.7752 2.2429 -0.7250 31 1 11.0084 3.0474 -2.2947 32 1 3.1714 4.5482 0.0013 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379545829.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:49 Heat of formation + Delta-G solvation = 51.786663 kcal Electronic energy + Delta-G solvation = -14859.750672 eV Core-core repulsion = 12368.268918 eV Total energy + Delta-G solvation = -2491.481754 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.89984 -36.67917 -34.95296 -32.64448 -30.67979 -27.84260 -27.18267 -26.51673 -24.14731 -21.94893 -20.68635 -20.27858 -17.61671 -16.87064 -16.28467 -15.40985 -14.89777 -14.68971 -14.20947 -14.04869 -13.87558 -13.69523 -13.09117 -12.77052 -12.27593 -12.02495 -11.83043 -11.28357 -11.07449 -10.97507 -10.72348 -10.55530 -10.17653 -9.95786 -9.49500 -9.31250 -9.24898 -8.52276 -7.49383 -7.20699 -6.11099 -4.12727 1.35649 1.64381 1.95557 2.39874 2.93291 3.26829 3.34763 3.39634 4.36684 4.81312 4.91488 5.06911 5.25685 5.36903 5.43496 5.46174 5.67880 5.73012 5.81930 5.93267 6.07574 6.22165 6.66679 6.75719 7.10660 7.17817 7.18979 7.67250 7.78585 7.91450 8.03253 8.38711 8.94790 9.52148 10.99747 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.042230 B = 0.004890 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.884172 B = 5724.212583 C = 5932.939124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.585 5.585 3 C 0.366 3.634 4 N -0.605 5.605 5 H 0.428 0.572 6 C 0.158 3.842 7 C 0.102 3.898 8 N -0.536 5.536 9 C 0.032 3.968 10 C 0.193 3.807 11 C -0.509 4.509 12 H 0.065 0.935 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.898 3.102 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.272 4.272 20 S -0.025 6.025 21 H 0.082 0.918 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.015 0.985 27 H 0.077 0.923 28 H 0.050 0.950 29 H -0.005 1.005 30 H 0.032 0.968 31 H 0.262 0.738 32 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.575 0.391 5.438 15.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.320 5.320 3 C -0.019 4.019 4 N -0.229 5.229 5 H 0.268 0.732 6 C 0.045 3.955 7 C -0.029 4.029 8 N -0.261 5.261 9 C -0.116 4.116 10 C 0.068 3.932 11 C -0.547 4.547 12 H 0.083 0.917 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.413 4.413 20 S 0.213 5.787 21 H 0.101 0.899 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.033 0.967 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.013 0.987 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -15.756 -0.479 5.244 16.613 hybrid contribution 1.857 0.606 -0.558 2.032 sum -13.899 0.128 4.686 14.668 Atomic orbital electron populations 1.22108 0.86072 1.02627 1.00348 1.71831 1.09316 1.18815 1.32035 1.24359 0.88148 0.93206 0.96224 1.41502 1.03981 1.08094 1.69289 0.73195 1.19293 0.97272 0.82318 0.96660 1.20958 0.86668 1.01261 0.94041 1.62174 1.10688 1.45968 1.07230 1.22314 0.98142 0.91322 0.99839 1.19790 0.79101 0.95924 0.98367 1.21158 0.91669 1.47693 0.94227 0.91725 1.24979 0.96796 0.95309 0.97434 1.69959 1.02315 1.49520 1.31942 0.86431 0.78835 0.77805 0.84310 1.19629 1.21054 1.20953 1.23962 0.92382 1.03179 1.21750 1.85245 1.09635 0.99092 1.84693 0.89935 0.93113 0.93165 0.92385 0.89487 0.96673 0.90441 0.93104 0.98685 0.95023 0.92876 0.80949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.41 59.85 0.62 1.09 16 2 N -0.58 -8.75 11.06 -68.18 -0.75 -9.50 16 3 C 0.37 5.35 8.36 -89.34 -0.75 4.61 16 4 N -0.61 -8.71 5.65 -10.11 -0.06 -8.76 16 5 H 0.43 5.86 8.96 -40.82 -0.37 5.50 16 6 C 0.16 2.26 5.61 -82.20 -0.46 1.80 16 7 C 0.10 1.60 5.38 -4.97 -0.03 1.57 16 8 N -0.54 -10.59 4.74 -245.82 -1.17 -11.76 16 9 C 0.03 0.59 9.06 60.07 0.54 1.13 16 10 C 0.19 4.69 4.72 -4.98 -0.02 4.67 16 11 C -0.51 -13.73 8.46 -34.44 -0.29 -14.02 16 12 H 0.06 1.75 7.12 -52.48 -0.37 1.37 16 13 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -25.82 13.29 55.43 0.74 -25.09 16 15 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 C -0.27 -3.58 9.50 29.00 0.28 -3.31 16 20 S -0.02 -0.32 22.41 -107.50 -2.41 -2.73 16 21 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 25 H 0.09 1.32 7.93 -51.93 -0.41 0.90 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 1.55 6.76 -51.93 -0.35 1.20 16 28 H 0.05 0.83 6.45 -51.93 -0.34 0.49 16 29 H 0.00 -0.12 8.12 -51.93 -0.42 -0.54 16 30 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.17 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 285.24 15.07 4.30 4.30 Total: -1.00 -29.27 285.24 -8.92 -38.18 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.34 Total: 0.24 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -0.20 Total: -1.01 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -1.24 Total: -55.11 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -2.41 Total: -2.73 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.27 -8.92 -38.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379545829.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.970 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds