Wall clock time and date at job start Mon Mar 30 2020 03:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.31025 * 120.00422 * 2 1 4 4 N 1.35688 * 125.60089 * 179.97438 * 3 2 1 5 5 H 0.97006 * 122.73512 * 0.02626 * 4 3 2 6 6 C 1.36586 * 114.52991 * 180.02562 * 4 3 2 7 7 C 1.50705 * 122.01005 * 179.97438 * 6 4 3 8 8 N 1.46907 * 109.46927 * 85.00164 * 7 6 4 9 9 C 1.46901 * 111.00044 * 66.04548 * 8 7 6 10 10 C 1.46899 * 110.99781 * 190.00165 * 8 7 6 11 11 C 1.50696 * 109.47192 * 169.99978 * 10 8 7 12 12 H 1.08004 * 119.99955 * 0.02562 * 11 10 8 13 13 C 1.37879 * 120.00393 * 179.97438 * 11 10 8 14 14 N 1.31517 * 119.99603 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00327 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47232 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46928 * 119.99849 * 15 13 11 18 18 H 1.48501 * 109.47188 * 240.00230 * 15 13 11 19 19 C 1.31050 * 115.98272 * 0.02562 * 6 4 3 20 20 S 1.75911 * 109.96622 * 359.73630 * 19 6 4 21 21 H 1.09002 * 109.47391 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46813 * 59.99934 * 1 2 3 23 23 H 1.09004 * 109.47041 * 300.00061 * 1 2 3 24 24 H 1.08998 * 109.46878 * 205.00134 * 7 6 4 25 25 H 1.08996 * 109.47131 * 325.00131 * 7 6 4 26 26 H 1.09000 * 109.47156 * 59.99791 * 9 8 7 27 27 H 1.08999 * 109.46597 * 179.97438 * 9 8 7 28 28 H 1.08997 * 109.47021 * 300.00324 * 9 8 7 29 29 H 1.09001 * 109.46868 * 290.00217 * 10 8 7 30 30 H 1.08999 * 109.47289 * 49.99483 * 10 8 7 31 31 H 0.96999 * 119.99662 * 179.97438 * 14 13 11 32 32 H 1.08001 * 125.01990 * 180.02562 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1202 1.1347 0.0000 4 7 3.4706 1.2670 0.0005 5 1 4.0723 0.5060 0.0005 6 6 3.9138 2.5590 0.0009 7 6 5.3818 2.8999 0.0021 8 7 5.8871 2.8933 -1.3773 9 6 5.2782 3.9726 -2.1663 10 6 7.3529 2.9860 -1.4014 11 6 7.8495 2.7309 -2.8011 12 1 7.1464 2.5213 -3.5937 13 6 9.2013 2.7662 -3.0703 14 7 10.0573 3.0230 -2.1054 15 14 9.8168 2.4493 -4.8052 16 1 8.6612 2.1874 -5.7004 17 1 10.5596 3.6395 -5.2920 18 1 10.7189 1.2696 -4.8026 19 6 2.9858 3.4843 0.0013 20 16 1.3930 2.7376 -0.0064 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 5.5246 3.8893 0.4366 25 1 5.9257 2.1621 0.5918 26 1 5.5164 4.9340 -1.7114 27 1 5.6701 3.9449 -3.1830 28 1 4.1966 3.8398 -2.1896 29 1 7.6591 3.9826 -1.0832 30 1 7.7752 2.2429 -0.7250 31 1 11.0084 3.0474 -2.2947 32 1 3.1714 4.5482 0.0013 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379545829.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:48 Heat of formation + Delta-G solvation = 30.856840 kcal Electronic energy + Delta-G solvation = -14860.658257 eV Core-core repulsion = 12368.268918 eV Total energy + Delta-G solvation = -2492.389340 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.02239 -38.15641 -36.11621 -34.62378 -31.89456 -29.37181 -28.75964 -27.59250 -25.84863 -23.28467 -22.12611 -21.47150 -18.77794 -18.46987 -17.76404 -16.91274 -16.37829 -16.03432 -15.57575 -15.49318 -15.16515 -14.83249 -14.17225 -14.14598 -13.75521 -13.42144 -13.32200 -12.92588 -12.71903 -12.62329 -12.32715 -12.17693 -11.77807 -11.34317 -11.22763 -10.61085 -10.52875 -10.28100 -9.08808 -8.28583 -8.19061 -6.29049 0.29771 0.56059 0.89257 1.29072 1.41281 1.43267 1.55484 1.87803 2.41293 3.13347 3.39460 3.79089 3.93744 4.22739 4.44839 4.51087 4.55626 4.64795 4.71160 4.73367 4.81616 4.88646 5.11148 5.20882 5.31125 5.64781 5.68023 6.03199 6.10521 6.26939 6.55828 6.75560 6.86675 7.40552 8.90508 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.042230 B = 0.004890 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.884172 B = 5724.212583 C = 5932.939124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.611 5.611 3 C 0.349 3.651 4 N -0.610 5.610 5 H 0.427 0.573 6 C 0.146 3.854 7 C 0.106 3.894 8 N -0.545 5.545 9 C 0.038 3.962 10 C 0.208 3.792 11 C -0.522 4.522 12 H 0.060 0.940 13 C 0.006 3.994 14 N -0.932 5.932 15 Si 0.964 3.036 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.280 1.280 19 C -0.263 4.263 20 S 0.006 5.994 21 H 0.094 0.906 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.023 0.977 27 H 0.054 0.946 28 H 0.073 0.927 29 H -0.027 1.027 30 H 0.011 0.989 31 H 0.264 0.736 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.885 0.753 5.056 16.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.347 5.347 3 C -0.035 4.035 4 N -0.233 5.233 5 H 0.267 0.733 6 C 0.033 3.967 7 C -0.024 4.024 8 N -0.270 5.270 9 C -0.110 4.110 10 C 0.082 3.918 11 C -0.561 4.561 12 H 0.078 0.922 13 C -0.193 4.193 14 N -0.572 5.572 15 Si 0.789 3.211 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.206 1.206 19 C -0.404 4.404 20 S 0.245 5.755 21 H 0.113 0.887 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.105 0.895 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.092 0.908 29 H -0.009 1.009 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -17.101 -0.115 4.866 17.780 hybrid contribution 2.161 0.496 -0.384 2.250 sum -14.940 0.381 4.483 15.603 Atomic orbital electron populations 1.22229 0.84473 1.03738 1.00989 1.71809 1.11073 1.19638 1.32145 1.24537 0.88245 0.94133 0.96620 1.41554 1.04173 1.08168 1.69425 0.73312 1.19037 0.96458 0.82638 0.98560 1.20910 0.87665 1.02191 0.91678 1.62007 1.07991 1.46897 1.10087 1.22259 0.99117 0.91285 0.98370 1.19419 0.82065 0.93808 0.96546 1.21476 0.91940 1.47307 0.95343 0.92184 1.25803 0.97081 0.95089 1.01286 1.70065 1.02652 1.50562 1.33956 0.85417 0.78272 0.77759 0.79669 1.19064 1.20423 1.20588 1.24281 0.92505 1.04002 1.19649 1.85144 1.08701 0.97564 1.84133 0.88743 0.92587 0.92162 0.90935 0.89451 0.95808 0.92688 0.90812 1.00898 0.97061 0.92690 0.78999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.41 127.77 1.33 2.12 16 2 N -0.61 -17.48 11.06 -369.62 -4.09 -21.57 16 3 C 0.35 9.70 8.36 179.90 1.50 11.21 16 4 N -0.61 -16.88 5.65 -185.91 -1.05 -17.93 16 5 H 0.43 11.57 8.96 -92.70 -0.83 10.74 16 6 C 0.15 3.93 5.61 41.73 0.23 4.16 16 7 C 0.11 3.22 5.38 85.56 0.46 3.68 16 8 N -0.55 -21.33 4.74 -931.64 -4.42 -25.75 16 9 C 0.04 1.34 9.06 127.69 1.16 2.49 16 10 C 0.21 10.26 4.72 85.56 0.40 10.67 16 11 C -0.52 -28.43 8.46 25.60 0.22 -28.22 16 12 H 0.06 3.26 7.12 -2.91 -0.02 3.24 16 13 C 0.01 0.31 5.46 84.65 0.46 0.78 16 14 N -0.93 -54.16 13.29 21.45 0.28 -53.87 16 15 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 19 C -0.26 -6.23 9.50 67.73 0.64 -5.59 16 20 S 0.01 0.14 22.41 -56.49 -1.27 -1.12 16 21 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 25 H 0.09 2.62 7.93 -2.39 -0.02 2.60 16 26 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 2.18 6.76 -2.39 -0.02 2.16 16 28 H 0.07 2.25 6.45 -2.39 -0.02 2.23 16 29 H -0.03 -1.42 8.12 -2.39 -0.02 -1.43 16 30 H 0.01 0.60 7.93 -2.39 -0.02 0.58 16 31 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.19 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -61.53 285.24 -1.81 -63.34 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: 0.29 Total: 10.21 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 6.41 Total: 1.31 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -9.27 Total: -119.12 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -1.27 Total: -1.12 kcal Total: -61.53 -1.81 -63.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379545829.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.199 kcal (2) G-P(sol) polarization free energy of solvation -61.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds