Wall clock time and date at job start Mon Mar 30 2020 03:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47249 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47141 * 300.00198 * 3 2 1 6 6 H 1.48498 * 109.47241 * 59.99938 * 3 2 1 7 7 C 1.37886 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99760 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47000 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99819 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00410 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99665 * 179.97438 * 11 10 9 14 14 C 1.53005 * 109.46927 * 174.79360 * 13 11 10 15 15 C 1.50698 * 112.84912 * 293.98480 * 14 13 11 16 16 O 1.20829 * 119.99889 * 120.44240 * 15 14 13 17 17 O 1.34227 * 120.00088 * 300.43536 * 15 14 13 18 18 C 1.53777 * 113.61248 * 162.67929 * 14 13 11 19 19 C 1.53783 * 87.07978 * 220.01961 * 18 14 13 20 20 C 1.53775 * 87.08021 * 25.43438 * 19 18 14 21 21 H 0.96998 * 120.00029 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46624 * 60.00291 * 9 7 2 23 23 H 1.09001 * 109.47375 * 300.00505 * 9 7 2 24 24 H 0.96999 * 120.00141 * 359.97438 * 10 9 7 25 25 H 1.08996 * 109.47813 * 294.79565 * 13 11 10 26 26 H 1.09008 * 109.46941 * 54.79935 * 13 11 10 27 27 H 0.96704 * 116.99804 * 179.97438 * 17 15 14 28 28 H 1.09008 * 113.61716 * 334.56804 * 18 14 13 29 29 H 1.09003 * 113.61536 * 105.47290 * 18 14 13 30 30 H 1.09000 * 113.61418 * 270.88317 * 19 18 14 31 31 H 1.09005 * 113.61076 * 139.97922 * 19 18 14 32 32 H 1.08996 * 113.61506 * 220.02014 * 20 19 18 33 33 H 1.08996 * 113.61677 * 89.11537 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5614 -5.1050 -0.0011 13 6 2.7331 -6.0288 -0.0016 14 6 1.9726 -7.3500 0.1287 15 6 1.2810 -7.4983 1.4595 16 8 0.0821 -7.6412 1.5046 17 8 1.9970 -7.4718 2.5945 18 6 2.8009 -8.5802 -0.2776 19 6 1.5243 -9.1226 -0.9416 20 6 1.0666 -7.6606 -1.0744 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 3.1567 -3.4355 -0.0009 25 1 3.2967 -6.0245 -0.9345 26 1 3.4195 -5.9203 0.8382 27 1 1.5092 -7.5705 3.4237 28 1 3.5992 -8.3550 -0.9850 29 1 3.1402 -9.1772 0.5689 30 1 0.9020 -9.7159 -0.2717 31 1 1.7043 -9.6124 -1.8987 32 1 0.0057 -7.5150 -0.8710 33 1 1.3905 -7.1839 -1.9995 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380050632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:14 Heat of formation + Delta-G solvation = -119.103466 kcal Electronic energy + Delta-G solvation = -17473.306640 eV Core-core repulsion = 14499.368912 eV Total energy + Delta-G solvation = -2973.937729 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.98943 -38.75593 -37.70813 -35.83791 -34.16016 -32.35157 -30.67097 -27.30079 -25.76089 -25.02062 -22.80350 -21.99094 -19.68027 -19.26086 -17.70986 -17.10227 -16.26445 -15.98638 -15.47658 -15.05495 -14.72037 -14.46560 -14.36958 -13.78054 -13.07672 -12.84966 -12.49747 -12.29576 -12.01261 -11.71948 -11.45169 -11.37420 -10.98229 -10.95108 -10.90009 -10.51715 -10.37404 -10.27470 -10.16877 -9.37999 -8.98628 -8.74023 -7.87410 -6.16785 -4.23858 2.40523 3.08928 3.23129 3.30114 3.33198 3.37275 3.94576 4.32364 4.44866 4.55559 4.74646 4.77724 5.19294 5.19959 5.35206 5.52974 5.58135 5.66526 5.73176 5.78098 5.81448 6.07888 6.26411 6.40705 6.65254 7.31122 7.44272 7.52198 7.66363 7.97056 8.08544 8.62437 8.77946 9.10465 9.42950 10.93502 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.043484 B = 0.005022 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.759625 B = 5574.534702 C = 5646.015812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.713 5.713 11 C 0.489 3.511 12 O -0.543 6.543 13 C -0.128 4.128 14 C -0.060 4.060 15 C 0.505 3.495 16 O -0.494 6.494 17 O -0.519 6.519 18 C -0.121 4.121 19 C -0.149 4.149 20 C -0.105 4.105 21 H 0.265 0.735 22 H 0.027 0.973 23 H 0.025 0.975 24 H 0.390 0.610 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.407 0.593 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.567 -15.885 0.267 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.361 5.361 11 C 0.273 3.727 12 O -0.421 6.421 13 C -0.168 4.168 14 C -0.061 4.061 15 C 0.346 3.654 16 O -0.379 6.379 17 O -0.331 6.331 18 C -0.158 4.158 19 C -0.187 4.187 20 C -0.143 4.143 21 H 0.075 0.925 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.223 0.777 25 H 0.122 0.878 26 H 0.116 0.884 27 H 0.266 0.734 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.395 -15.880 -0.093 17.518 hybrid contribution 0.564 1.155 0.653 1.442 sum 7.959 -14.725 0.560 16.748 Atomic orbital electron populations 1.69987 1.06137 1.27200 1.48957 1.24964 0.94903 0.99487 0.94708 0.86358 0.79816 0.82959 0.77757 1.19623 1.20784 1.20807 1.21268 0.93286 0.90460 1.53118 0.91842 1.19095 0.88319 0.82005 0.97696 1.46457 1.11070 1.06141 1.72466 1.20453 0.89640 0.84496 0.78127 1.90736 1.16501 1.84703 1.50160 1.21707 0.98393 0.91679 1.05017 1.21253 0.98234 0.96194 0.90428 1.22515 0.85660 0.71887 0.85361 1.90695 1.15860 1.43986 1.87400 1.84486 1.45763 1.85429 1.17462 1.23028 0.97220 0.94623 1.00928 1.22978 0.96979 0.97459 1.01261 1.22842 1.01631 0.94348 0.95454 0.92492 0.95531 0.95676 0.77741 0.87832 0.88417 0.73435 0.88441 0.90746 0.90229 0.90765 0.89022 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 10 N -0.71 -14.96 5.55 -61.47 -0.34 -15.30 16 11 C 0.49 9.64 7.47 -10.99 -0.08 9.56 16 12 O -0.54 -13.04 14.33 5.56 0.08 -12.96 16 13 C -0.13 -1.74 5.13 -27.88 -0.14 -1.88 16 14 C -0.06 -0.81 0.70 -154.85 -0.11 -0.92 16 15 C 0.51 7.93 6.00 36.00 0.22 8.15 16 16 O -0.49 -9.48 16.56 -18.91 -0.31 -9.80 16 17 O -0.52 -6.49 13.42 -39.25 -0.53 -7.02 16 18 C -0.12 -1.16 7.22 -25.92 -0.19 -1.35 16 19 C -0.15 -1.57 7.80 -25.92 -0.20 -1.78 16 20 C -0.11 -1.46 5.82 -25.92 -0.15 -1.61 16 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.39 6.93 8.32 -40.82 -0.34 6.59 16 25 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 26 H 0.10 1.17 8.14 -51.92 -0.42 0.74 16 27 H 0.41 3.47 9.10 45.56 0.41 3.88 16 28 H 0.10 0.74 8.04 -51.92 -0.42 0.32 16 29 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.57 7.24 -51.93 -0.38 1.20 16 33 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 LS Contribution 287.88 15.07 4.34 4.34 Total: -1.00 -35.11 287.88 -5.77 -40.88 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -3.62 Total: 6.23 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.10 Total: 3.37 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.40 Total: -40.92 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.76 Total: -29.77 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -35.11 -5.77 -40.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380050632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.223 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds