Wall clock time and date at job start Mon Mar 30 2020 03:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47249 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47141 * 300.00198 * 3 2 1 6 6 H 1.48498 * 109.47241 * 59.99938 * 3 2 1 7 7 C 1.37886 * 120.00132 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99760 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47000 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99819 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00410 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99665 * 179.97438 * 11 10 9 14 14 C 1.53005 * 109.46927 * 174.79360 * 13 11 10 15 15 C 1.50698 * 112.84912 * 293.98480 * 14 13 11 16 16 O 1.20829 * 119.99889 * 120.44240 * 15 14 13 17 17 O 1.34227 * 120.00088 * 300.43536 * 15 14 13 18 18 C 1.53777 * 113.61248 * 162.67929 * 14 13 11 19 19 C 1.53783 * 87.07978 * 220.01961 * 18 14 13 20 20 C 1.53775 * 87.08021 * 25.43438 * 19 18 14 21 21 H 0.96998 * 120.00029 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46624 * 60.00291 * 9 7 2 23 23 H 1.09001 * 109.47375 * 300.00505 * 9 7 2 24 24 H 0.96999 * 120.00141 * 359.97438 * 10 9 7 25 25 H 1.08996 * 109.47813 * 294.79565 * 13 11 10 26 26 H 1.09008 * 109.46941 * 54.79935 * 13 11 10 27 27 H 0.96704 * 116.99804 * 179.97438 * 17 15 14 28 28 H 1.09008 * 113.61716 * 334.56804 * 18 14 13 29 29 H 1.09003 * 113.61536 * 105.47290 * 18 14 13 30 30 H 1.09000 * 113.61418 * 270.88317 * 19 18 14 31 31 H 1.09005 * 113.61076 * 139.97922 * 19 18 14 32 32 H 1.08996 * 113.61506 * 220.02014 * 20 19 18 33 33 H 1.08996 * 113.61677 * 89.11537 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5614 -5.1050 -0.0011 13 6 2.7331 -6.0288 -0.0016 14 6 1.9726 -7.3500 0.1287 15 6 1.2810 -7.4983 1.4595 16 8 0.0821 -7.6412 1.5046 17 8 1.9970 -7.4718 2.5945 18 6 2.8009 -8.5802 -0.2776 19 6 1.5243 -9.1226 -0.9416 20 6 1.0666 -7.6606 -1.0744 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 3.1567 -3.4355 -0.0009 25 1 3.2967 -6.0245 -0.9345 26 1 3.4195 -5.9203 0.8382 27 1 1.5092 -7.5705 3.4237 28 1 3.5992 -8.3550 -0.9850 29 1 3.1402 -9.1772 0.5689 30 1 0.9020 -9.7159 -0.2717 31 1 1.7043 -9.6124 -1.8987 32 1 0.0057 -7.5150 -0.8710 33 1 1.3905 -7.1839 -1.9995 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380050632.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:14 Heat of formation + Delta-G solvation = -146.619188 kcal Electronic energy + Delta-G solvation = -17474.499812 eV Core-core repulsion = 14499.368912 eV Total energy + Delta-G solvation = -2975.130900 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.13682 -40.28403 -38.86324 -37.02940 -36.11605 -34.35998 -31.92387 -29.22148 -26.75237 -26.26414 -24.57355 -23.23624 -21.35049 -20.28267 -19.09585 -18.69830 -17.61582 -17.41527 -17.00124 -16.73215 -16.21008 -15.95203 -15.46602 -15.08180 -14.62106 -14.37183 -14.00643 -13.82935 -13.36425 -13.08539 -12.91650 -12.76028 -12.63607 -12.54207 -12.22281 -11.91987 -11.52841 -11.46127 -11.38896 -11.21916 -10.82681 -10.62734 -9.81429 -8.30348 -6.47437 1.22053 1.42770 1.44138 1.57786 1.79716 2.07040 2.31785 2.57475 3.04806 3.42260 3.52087 3.70905 3.88739 4.08444 4.39766 4.44899 4.58346 4.80754 4.81063 4.88239 5.07147 5.10810 5.16236 5.21043 5.22359 5.45272 5.49242 5.61221 5.70028 5.84267 6.64977 6.92347 6.99758 7.22824 7.53218 8.82333 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.043484 B = 0.005022 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.759625 B = 5574.534702 C = 5646.015812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.987 3.013 4 H -0.250 1.250 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.087 0.913 9 C 0.267 3.733 10 N -0.708 5.708 11 C 0.481 3.519 12 O -0.592 6.592 13 C -0.112 4.112 14 C -0.075 4.075 15 C 0.499 3.501 16 O -0.544 6.544 17 O -0.508 6.508 18 C -0.094 4.094 19 C -0.141 4.141 20 C -0.119 4.119 21 H 0.268 0.732 22 H -0.015 1.015 23 H -0.020 1.020 24 H 0.410 0.590 25 H 0.148 0.852 26 H 0.126 0.874 27 H 0.423 0.577 28 H 0.134 0.866 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.042 0.958 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.534 -16.332 -0.120 20.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.173 1.173 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.592 4.592 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.358 5.358 11 C 0.269 3.731 12 O -0.474 6.474 13 C -0.151 4.151 14 C -0.077 4.077 15 C 0.343 3.657 16 O -0.434 6.434 17 O -0.322 6.322 18 C -0.131 4.131 19 C -0.178 4.178 20 C -0.157 4.157 21 H 0.077 0.923 22 H 0.003 0.997 23 H -0.003 1.003 24 H 0.246 0.754 25 H 0.165 0.835 26 H 0.144 0.856 27 H 0.284 0.716 28 H 0.152 0.848 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.061 0.939 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.435 -16.364 -0.460 19.969 hybrid contribution -0.752 1.244 0.817 1.667 sum 10.683 -15.120 0.357 18.517 Atomic orbital electron populations 1.70160 1.08457 1.28507 1.50182 1.26120 0.95746 1.04111 0.93840 0.85077 0.79189 0.77120 0.77616 1.17308 1.20451 1.20614 1.21672 0.94396 0.90471 1.52623 0.89518 1.18490 0.88771 0.84697 0.93677 1.46194 1.11128 1.05524 1.73003 1.21680 0.90198 0.85270 0.75957 1.90735 1.19412 1.85402 1.51818 1.21767 0.96823 0.88087 1.08432 1.21509 0.99146 0.98094 0.88939 1.23141 0.85278 0.70535 0.86790 1.90680 1.18082 1.46416 1.88179 1.84443 1.45350 1.84653 1.17718 1.23048 0.96881 0.91482 1.01713 1.22924 0.97211 0.95169 1.02502 1.22897 0.98973 0.97532 0.96269 0.92302 0.99666 1.00253 0.75432 0.83457 0.85623 0.71614 0.84833 0.89347 0.91648 0.88122 0.93919 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.99 42.40 29.54 68.60 2.03 44.43 16 4 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -30.26 9.28 25.60 0.24 -30.02 16 8 H 0.09 4.23 7.60 -2.91 -0.02 4.21 16 9 C 0.27 14.89 5.43 85.63 0.46 15.36 16 10 N -0.71 -29.61 5.55 -466.80 -2.59 -32.20 16 11 C 0.48 18.93 7.47 87.66 0.66 19.59 16 12 O -0.59 -29.88 14.33 -3.02 -0.04 -29.92 16 13 C -0.11 -2.67 5.13 29.85 0.15 -2.52 16 14 C -0.08 -1.90 0.70 -52.40 -0.04 -1.93 16 15 C 0.50 15.55 6.00 71.24 0.43 15.98 16 16 O -0.54 -21.96 16.56 22.10 0.37 -21.60 16 17 O -0.51 -11.92 13.42 -51.39 -0.69 -12.60 16 18 C -0.09 -1.40 7.22 31.12 0.22 -1.18 16 19 C -0.14 -2.66 7.80 31.12 0.24 -2.42 16 20 C -0.12 -3.26 5.82 31.12 0.18 -3.08 16 21 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 22 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 23 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 24 H 0.41 13.71 8.32 -92.71 -0.77 12.94 16 25 H 0.15 2.33 8.05 -2.39 -0.02 2.31 16 26 H 0.13 2.40 8.14 -2.38 -0.02 2.38 16 27 H 0.42 6.82 9.10 -74.05 -0.67 6.15 16 28 H 0.13 1.11 8.04 -2.38 -0.02 1.09 16 29 H 0.09 1.15 8.10 -2.39 -0.02 1.13 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.04 1.57 7.24 -2.39 -0.02 1.56 16 33 H 0.10 2.48 8.10 -2.39 -0.02 2.46 16 Total: -1.00 -82.81 287.88 2.06 -80.76 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -0.31 Total: 17.93 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 3.01 Total: 10.29 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -2.30 Total: -89.29 kcal Atomic # 8 Polarization: -63.76 SS G_CDS: -0.37 Total: -64.12 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -82.81 2.06 -80.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380050632.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.864 kcal (2) G-P(sol) polarization free energy of solvation -82.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds