Wall clock time and date at job start Mon Mar 30 2020 03:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47501 * 132.05764 * 3 2 1 5 5 C 1.37102 * 119.99949 * 95.00156 * 4 3 2 6 6 H 1.08001 * 119.99965 * 318.39772 * 5 4 3 7 7 C 1.38951 * 119.99931 * 138.39968 * 5 4 3 8 8 N 1.31406 * 120.00185 * 159.98667 * 7 5 4 9 9 Si 1.86801 * 119.99697 * 339.98261 * 7 5 4 10 10 H 1.48500 * 109.46902 * 95.26383 * 9 7 5 11 11 H 1.48499 * 109.46863 * 215.26184 * 9 7 5 12 12 H 1.48497 * 109.47083 * 335.26278 * 9 7 5 13 13 C 1.34773 * 119.99749 * 274.73416 * 4 3 2 14 14 O 1.21291 * 119.99965 * 179.97438 * 13 4 3 15 15 C 1.50698 * 120.00245 * 359.97438 * 13 4 3 16 16 H 1.09002 * 109.46910 * 15.00505 * 15 13 4 17 17 F 1.39899 * 109.47505 * 255.00757 * 15 13 4 18 18 C 1.52999 * 109.46930 * 135.00113 * 15 13 4 19 19 C 1.53936 * 113.73047 * 161.72904 * 18 15 13 20 20 N 1.47963 * 86.18094 * 221.92297 * 19 18 15 21 21 C 1.47956 * 90.76009 * 24.69164 * 20 19 18 22 22 H 1.08998 * 109.47376 * 12.05354 * 3 2 1 23 23 H 1.09012 * 109.46918 * 252.05447 * 3 2 1 24 24 H 0.96992 * 119.99908 * 180.02562 * 8 7 5 25 25 H 1.08995 * 112.94535 * 293.43581 * 18 15 13 26 26 H 1.08999 * 113.76421 * 336.24059 * 19 18 15 27 27 H 1.09002 * 113.75858 * 107.60531 * 19 18 15 28 28 H 1.00896 * 111.00163 * 271.79769 * 20 19 18 29 29 H 1.09001 * 113.75858 * 220.98834 * 21 20 19 30 30 H 1.08998 * 113.75919 * 89.62842 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.9261 -1.0255 5 6 3.4216 2.2143 -0.6874 6 1 2.7933 2.7690 -0.0062 7 6 4.5598 2.8061 -1.2211 8 7 4.6759 4.1150 -1.2325 9 14 5.9248 1.7411 -1.9224 10 1 5.7438 1.6075 -3.3903 11 1 7.2392 2.3724 -1.6412 12 1 5.8766 0.3969 -1.2933 13 6 3.2300 0.5096 -2.3002 14 8 3.6336 1.2759 -3.1494 15 6 2.8784 -0.9083 -2.6706 16 1 2.2959 -1.3597 -1.8675 17 9 4.0522 -1.6441 -2.8657 18 6 2.0554 -0.9093 -3.9603 19 6 2.0170 -2.2749 -4.6697 20 7 2.1915 -1.5154 -5.9275 21 6 2.8304 -0.4030 -5.1902 22 1 2.9718 -1.0041 -0.2146 23 1 2.9712 0.3175 0.9778 24 1 5.4703 4.5281 -1.6055 25 1 1.0751 -0.4483 -3.8392 26 1 2.8608 -2.9204 -4.4258 27 1 1.0556 -2.7827 -4.5931 28 1 1.2998 -1.2332 -6.3061 29 1 2.5188 0.5849 -5.5295 30 1 3.9121 -0.5009 -5.0986 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380125370.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:19 Heat of formation + Delta-G solvation = 7.201290 kcal Electronic energy + Delta-G solvation = -17961.406745 eV Core-core repulsion = 14901.778448 eV Total energy + Delta-G solvation = -3059.628297 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.097 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.61688 -39.58050 -38.69529 -36.42701 -34.63394 -32.41922 -30.18344 -27.91764 -25.96216 -25.64945 -23.42869 -20.40779 -19.63223 -18.11033 -17.65932 -16.76266 -16.28401 -15.96287 -15.78202 -14.94482 -14.41287 -13.84171 -13.55603 -13.28319 -13.09360 -12.81855 -12.63281 -12.49032 -12.44979 -12.30717 -12.06059 -11.60666 -11.30991 -11.08944 -10.91340 -10.52200 -10.33272 -10.05349 -8.82269 -8.74405 -8.42287 -8.05945 -6.40215 -4.22824 2.82189 2.95083 3.03287 3.39035 3.52769 3.56852 3.93535 4.06394 4.30334 4.39941 4.50450 4.70111 4.84488 4.96520 5.11049 5.20580 5.37096 5.39453 5.52854 5.75218 5.85355 5.95452 6.01800 6.06473 6.42267 7.36211 7.57051 7.58224 7.76257 8.41938 8.54768 9.14631 9.37662 10.63702 Molecular weight = 241.10amu Principal moments of inertia in cm(-1) A = 0.020716 B = 0.012082 C = 0.009023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.314265 B = 2317.004901 C = 3102.301714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.199 3.801 3 C 0.185 3.815 4 N -0.449 5.449 5 C -0.362 4.362 6 H 0.100 0.900 7 C 0.098 3.902 8 N -0.852 5.852 9 Si 0.907 3.093 10 H -0.251 1.251 11 H -0.303 1.303 12 H -0.274 1.274 13 C 0.426 3.574 14 O -0.509 6.509 15 C 0.083 3.917 16 H 0.090 0.910 17 F -0.193 7.193 18 C -0.175 4.175 19 C 0.025 3.975 20 N -0.664 5.664 21 C 0.047 3.953 22 H 0.106 0.894 23 H 0.132 0.868 24 H 0.277 0.723 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.333 0.667 29 H 0.079 0.921 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 -11.531 -1.300 11.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.120 4.120 3 C 0.058 3.942 4 N -0.172 5.172 5 C -0.487 4.487 6 H 0.118 0.882 7 C -0.114 4.114 8 N -0.485 5.485 9 Si 0.736 3.264 10 H -0.177 1.177 11 H -0.232 1.232 12 H -0.199 1.199 13 C 0.215 3.785 14 O -0.388 6.388 15 C 0.042 3.958 16 H 0.107 0.893 17 F -0.174 7.174 18 C -0.195 4.195 19 C -0.105 4.105 20 N -0.290 5.290 21 C -0.083 4.083 22 H 0.124 0.876 23 H 0.149 0.851 24 H 0.087 0.913 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.091 0.909 28 H 0.147 0.853 29 H 0.098 0.902 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.110 -11.344 -2.253 11.976 hybrid contribution 0.324 0.119 0.508 0.614 sum -2.786 -11.225 -1.745 11.697 Atomic orbital electron populations 1.81100 1.13287 1.08879 1.08487 1.30212 0.96069 0.92699 0.93034 1.19285 0.80514 0.96747 0.97660 1.43620 1.58179 1.11454 1.03924 1.18859 1.10358 0.85817 1.33638 0.88230 1.25277 0.97541 0.95258 0.93288 1.69732 1.28351 1.09675 1.40716 0.86431 0.78419 0.79824 0.81720 1.17679 1.23235 1.19948 1.20584 0.85171 0.89279 0.83516 1.90576 1.45671 1.54906 1.47627 1.21567 0.83859 0.91002 0.99356 0.89255 1.92822 1.50238 1.77875 1.96494 1.24760 1.00586 0.99065 0.95113 1.23696 1.02386 0.94968 0.89437 1.65116 1.24461 1.14982 1.24431 1.23499 1.00802 0.94669 0.89294 0.87638 0.85076 0.91329 0.87682 0.87816 0.90910 0.85350 0.90237 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.88 18.54 42.15 0.78 -7.10 16 2 C 0.20 3.22 15.04 -20.76 -0.31 2.91 16 3 C 0.19 2.79 5.50 -6.83 -0.04 2.76 16 4 N -0.45 -9.53 2.16 -117.93 -0.25 -9.78 16 5 C -0.36 -9.26 9.69 -14.93 -0.14 -9.40 16 6 H 0.10 2.68 8.06 -52.49 -0.42 2.26 16 7 C 0.10 2.68 4.83 -17.47 -0.08 2.59 16 8 N -0.85 -24.48 13.96 55.50 0.77 -23.70 16 9 Si 0.91 22.58 24.76 -169.99 -4.21 18.37 16 10 H -0.25 -6.61 6.29 56.52 0.36 -6.25 16 11 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.43 9.18 5.18 -10.99 -0.06 9.12 16 14 O -0.51 -12.79 10.63 5.55 0.06 -12.73 16 15 C 0.08 1.39 3.28 -27.88 -0.09 1.30 16 16 H 0.09 1.23 5.44 -51.93 -0.28 0.95 16 17 F -0.19 -3.41 15.47 2.25 0.03 -3.37 16 18 C -0.17 -2.65 3.85 -89.69 -0.35 -3.00 16 19 C 0.03 0.32 8.35 -2.76 -0.02 0.30 16 20 N -0.66 -9.23 8.55 -117.01 -1.00 -10.23 16 21 C 0.05 0.77 6.72 -2.77 -0.02 0.75 16 22 H 0.11 1.23 6.52 -51.93 -0.34 0.89 16 23 H 0.13 1.70 8.00 -51.92 -0.42 1.28 16 24 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 26 H 0.10 1.35 7.27 -51.93 -0.38 0.98 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.33 3.95 8.89 -39.29 -0.35 3.60 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.10 1.94 7.71 -51.93 -0.40 1.54 16 LS Contribution 261.63 15.07 3.94 3.94 Total: -1.00 -31.63 261.63 -4.02 -35.66 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -3.04 Total: 1.63 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -1.11 Total: 7.32 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.30 Total: -50.82 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.06 Total: -12.73 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.03 Total: -3.37 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.21 Total: 18.37 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.63 -4.02 -35.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380125370.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.856 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds