Wall clock time and date at job start Mon Mar 30 2020 03:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47501 * 132.05764 * 3 2 1 5 5 C 1.37102 * 119.99949 * 95.00156 * 4 3 2 6 6 H 1.08001 * 119.99965 * 318.39772 * 5 4 3 7 7 C 1.38951 * 119.99931 * 138.39968 * 5 4 3 8 8 N 1.31406 * 120.00185 * 159.98667 * 7 5 4 9 9 Si 1.86801 * 119.99697 * 339.98261 * 7 5 4 10 10 H 1.48500 * 109.46902 * 95.26383 * 9 7 5 11 11 H 1.48499 * 109.46863 * 215.26184 * 9 7 5 12 12 H 1.48497 * 109.47083 * 335.26278 * 9 7 5 13 13 C 1.34773 * 119.99749 * 274.73416 * 4 3 2 14 14 O 1.21291 * 119.99965 * 179.97438 * 13 4 3 15 15 C 1.50698 * 120.00245 * 359.97438 * 13 4 3 16 16 H 1.09002 * 109.46910 * 15.00505 * 15 13 4 17 17 F 1.39899 * 109.47505 * 255.00757 * 15 13 4 18 18 C 1.52999 * 109.46930 * 135.00113 * 15 13 4 19 19 C 1.53936 * 113.73047 * 161.72904 * 18 15 13 20 20 N 1.47963 * 86.18094 * 221.92297 * 19 18 15 21 21 C 1.47956 * 90.76009 * 24.69164 * 20 19 18 22 22 H 1.08998 * 109.47376 * 12.05354 * 3 2 1 23 23 H 1.09012 * 109.46918 * 252.05447 * 3 2 1 24 24 H 0.96992 * 119.99908 * 180.02562 * 8 7 5 25 25 H 1.08995 * 112.94535 * 293.43581 * 18 15 13 26 26 H 1.08999 * 113.76421 * 336.24059 * 19 18 15 27 27 H 1.09002 * 113.75858 * 107.60531 * 19 18 15 28 28 H 1.00896 * 111.00163 * 271.79769 * 20 19 18 29 29 H 1.09001 * 113.75858 * 220.98834 * 21 20 19 30 30 H 1.08998 * 113.75919 * 89.62842 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.9261 -1.0255 5 6 3.4216 2.2143 -0.6874 6 1 2.7933 2.7690 -0.0062 7 6 4.5598 2.8061 -1.2211 8 7 4.6759 4.1150 -1.2325 9 14 5.9248 1.7411 -1.9224 10 1 5.7438 1.6075 -3.3903 11 1 7.2392 2.3724 -1.6412 12 1 5.8766 0.3969 -1.2933 13 6 3.2300 0.5096 -2.3002 14 8 3.6336 1.2759 -3.1494 15 6 2.8784 -0.9083 -2.6706 16 1 2.2959 -1.3597 -1.8675 17 9 4.0522 -1.6441 -2.8657 18 6 2.0554 -0.9093 -3.9603 19 6 2.0170 -2.2749 -4.6697 20 7 2.1915 -1.5154 -5.9275 21 6 2.8304 -0.4030 -5.1902 22 1 2.9718 -1.0041 -0.2146 23 1 2.9712 0.3175 0.9778 24 1 5.4703 4.5281 -1.6055 25 1 1.0751 -0.4483 -3.8392 26 1 2.8608 -2.9204 -4.4258 27 1 1.0556 -2.7827 -4.5931 28 1 1.2998 -1.2332 -6.3061 29 1 2.5188 0.5849 -5.5295 30 1 3.9121 -0.5009 -5.0986 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380125370.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:18 Heat of formation + Delta-G solvation = -17.640231 kcal Electronic energy + Delta-G solvation = -17962.483954 eV Core-core repulsion = 14901.778448 eV Total energy + Delta-G solvation = -3060.705506 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.097 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.98256 -41.09156 -40.02625 -37.87392 -36.29042 -34.36762 -31.58002 -29.40457 -27.34138 -26.95584 -25.01135 -21.95738 -20.96678 -19.80585 -19.10082 -18.10985 -17.75195 -17.38916 -17.09541 -16.62700 -15.98945 -15.27776 -15.11561 -14.99710 -14.48132 -14.41898 -14.23520 -13.87564 -13.62445 -13.53906 -13.50678 -13.01920 -13.00218 -12.60671 -12.45219 -12.01501 -11.89554 -11.74076 -10.81502 -10.47732 -9.93782 -9.54552 -8.46616 -6.26470 1.15609 1.39694 1.46084 1.54214 1.70158 1.78309 2.38376 2.44591 2.92590 2.95012 3.13606 3.26301 3.43004 3.53530 3.78722 3.95214 4.18291 4.27696 4.49910 4.62840 4.67845 4.75500 4.79811 4.95379 5.17907 5.61724 5.71788 6.35367 6.46393 6.57455 6.70575 7.16965 7.58606 8.61013 Molecular weight = 241.10amu Principal moments of inertia in cm(-1) A = 0.020716 B = 0.012082 C = 0.009023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.314265 B = 2317.004901 C = 3102.301714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.217 3.783 3 C 0.184 3.816 4 N -0.463 5.463 5 C -0.351 4.351 6 H 0.078 0.922 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.950 3.050 10 H -0.280 1.280 11 H -0.305 1.305 12 H -0.249 1.249 13 C 0.421 3.579 14 O -0.551 6.551 15 C 0.090 3.910 16 H 0.131 0.869 17 F -0.195 7.195 18 C -0.176 4.176 19 C 0.040 3.960 20 N -0.665 5.665 21 C 0.039 3.961 22 H 0.155 0.845 23 H 0.158 0.842 24 H 0.275 0.725 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.346 0.654 29 H 0.063 0.937 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.135 -14.582 -0.780 14.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.102 4.102 3 C 0.059 3.941 4 N -0.186 5.186 5 C -0.478 4.478 6 H 0.096 0.904 7 C -0.151 4.151 8 N -0.536 5.536 9 Si 0.779 3.221 10 H -0.207 1.207 11 H -0.234 1.234 12 H -0.172 1.172 13 C 0.210 3.790 14 O -0.432 6.432 15 C 0.050 3.950 16 H 0.148 0.852 17 F -0.176 7.176 18 C -0.197 4.197 19 C -0.090 4.090 20 N -0.293 5.293 21 C -0.090 4.090 22 H 0.172 0.828 23 H 0.175 0.825 24 H 0.085 0.915 25 H 0.130 0.870 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.161 0.839 29 H 0.082 0.918 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.896 -14.437 -1.702 15.050 hybrid contribution 0.453 1.052 0.310 1.186 sum -3.443 -13.385 -1.392 13.891 Atomic orbital electron populations 1.81140 1.14285 1.09900 1.09449 1.30273 0.96016 0.91748 0.92115 1.19727 0.79485 0.97716 0.97201 1.43752 1.58286 1.11124 1.05405 1.18736 1.09050 0.88037 1.31941 0.90429 1.25857 0.99543 0.95728 0.94021 1.69820 1.29186 1.11055 1.43549 0.85711 0.76776 0.80046 0.79518 1.20687 1.23390 1.17216 1.21578 0.83199 0.91136 0.83084 1.90562 1.46986 1.56738 1.48932 1.21605 0.84064 0.87841 1.01465 0.85179 1.92828 1.50694 1.77413 1.96644 1.24873 1.00194 1.00901 0.93694 1.23733 1.04235 0.93570 0.87417 1.65054 1.25337 1.13940 1.24952 1.23305 0.99647 0.94789 0.91303 0.82801 0.82497 0.91526 0.86963 0.87783 0.87536 0.83883 0.91846 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -15.57 18.54 20.01 0.37 -15.20 16 2 C 0.22 6.28 15.04 89.44 1.35 7.62 16 3 C 0.18 4.78 5.50 84.57 0.47 5.25 16 4 N -0.46 -18.59 2.16 -645.41 -1.39 -19.98 16 5 C -0.35 -17.86 9.69 84.04 0.81 -17.05 16 6 H 0.08 4.22 8.06 -2.91 -0.02 4.20 16 7 C 0.05 3.03 4.83 84.93 0.41 3.44 16 8 N -0.90 -53.29 13.96 21.66 0.30 -52.99 16 9 Si 0.95 46.75 24.76 68.60 1.70 48.45 16 10 H -0.28 -14.95 6.29 99.48 0.63 -14.33 16 11 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 12 H -0.25 -10.95 7.11 99.48 0.71 -10.25 16 13 C 0.42 17.30 5.18 87.66 0.45 17.76 16 14 O -0.55 -27.71 10.63 -3.06 -0.03 -27.75 16 15 C 0.09 2.71 3.28 29.85 0.10 2.81 16 16 H 0.13 2.86 5.44 -2.39 -0.01 2.85 16 17 F -0.19 -6.17 15.47 44.97 0.70 -5.48 16 18 C -0.18 -4.84 3.85 -10.15 -0.04 -4.88 16 19 C 0.04 0.86 8.35 86.41 0.72 1.58 16 20 N -0.67 -16.96 8.55 -524.12 -4.48 -21.44 16 21 C 0.04 1.27 6.72 86.41 0.58 1.85 16 22 H 0.15 2.61 6.52 -2.39 -0.02 2.59 16 23 H 0.16 3.37 8.00 -2.38 -0.02 3.35 16 24 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 26 H 0.10 2.29 7.27 -2.39 -0.02 2.27 16 27 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.35 7.33 8.89 -89.70 -0.80 6.53 16 29 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.08 2.93 7.71 -2.39 -0.02 2.91 16 Total: -1.00 -70.84 261.63 2.32 -68.53 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.31 Total: 7.49 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 4.85 Total: 18.38 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -5.20 Total: -109.62 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.03 Total: -27.75 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.70 Total: -5.48 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.70 Total: 48.45 kcal Total: -70.84 2.32 -68.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380125370.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.887 kcal (2) G-P(sol) polarization free energy of solvation -70.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds