Wall clock time and date at job start Mon Mar 30 2020 03:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99937 * 2 1 4 4 H 1.48494 * 109.47552 * 270.00279 * 3 2 1 5 5 H 1.48501 * 109.47060 * 30.00479 * 3 2 1 6 6 H 1.48505 * 109.46940 * 150.00332 * 3 2 1 7 7 C 1.37872 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00197 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99973 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.62371 * 60.38174 * 9 7 2 11 11 C 1.53226 * 109.78535 * 180.85983 * 9 7 2 12 12 C 1.52961 * 109.40679 * 174.43485 * 11 9 7 13 13 C 1.52955 * 109.81519 * 296.40225 * 12 11 9 14 14 C 1.52795 * 109.48385 * 63.46768 * 13 12 11 15 15 C 1.51265 * 109.62460 * 300.00328 * 9 7 2 16 16 N 1.28011 * 120.85121 * 8.71891 * 15 9 7 17 17 N 1.40100 * 119.99925 * 184.96708 * 16 15 9 18 18 C 1.34771 * 120.00262 * 174.57779 * 17 16 15 19 19 N 1.34783 * 119.99956 * 0.02562 * 18 17 16 20 20 S 1.71198 * 120.00469 * 179.97438 * 18 17 16 21 21 H 0.97008 * 120.00002 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.48096 * 294.41728 * 11 9 7 23 23 H 1.09006 * 109.48248 * 54.45332 * 11 9 7 24 24 H 1.09003 * 109.40781 * 56.50865 * 12 11 9 25 25 H 1.08997 * 109.41216 * 176.28999 * 12 11 9 26 26 H 1.09003 * 109.47952 * 183.57631 * 13 12 11 27 27 H 1.08996 * 109.48336 * 303.60075 * 13 12 11 28 28 H 1.09000 * 109.56251 * 185.79046 * 14 13 12 29 29 H 1.08997 * 109.46712 * 65.36143 * 14 13 12 30 30 H 0.97006 * 120.00194 * 354.57541 * 17 16 15 31 31 H 0.97005 * 119.99448 * 359.97438 * 19 18 17 32 32 H 0.96997 * 119.99925 * 179.72432 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8780 -0.6869 0.8914 11 6 4.0301 -2.6357 -0.0233 12 6 5.5533 -2.6258 -0.1636 13 6 5.9463 -2.0055 -1.5054 14 6 5.4990 -0.5449 -1.5421 15 6 4.0191 -0.4813 -1.2350 16 7 3.2161 0.1547 -2.0027 17 7 3.6870 0.7202 -3.1948 18 6 2.8235 1.2945 -4.0555 19 7 1.5068 1.3253 -3.7692 20 16 3.3990 1.9861 -5.5120 21 1 -0.4850 0.8401 0.0004 22 1 3.7538 -3.1358 0.9051 23 1 3.5907 -3.1672 -0.8674 24 1 5.9879 -2.0411 0.6471 25 1 5.9284 -3.6480 -0.1132 26 1 7.0281 -2.0588 -1.6275 27 1 5.4618 -2.5520 -2.3144 28 1 5.6854 -0.1309 -2.5330 29 1 6.0526 0.0234 -0.7948 30 1 4.6347 0.6985 -3.4008 31 1 1.1808 0.9337 -2.9437 32 1 0.8858 1.7421 -4.3867 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383925227.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:15 Heat of formation + Delta-G solvation = 46.865099 kcal Electronic energy + Delta-G solvation = -15990.532207 eV Core-core repulsion = 13498.837038 eV Total energy + Delta-G solvation = -2491.695169 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.44802 -37.56836 -34.66959 -33.28210 -31.43806 -30.79072 -27.74859 -24.82913 -23.47879 -21.41246 -20.98402 -19.77522 -18.41488 -17.01304 -16.86363 -16.12756 -15.08047 -14.82326 -14.41343 -14.13034 -13.67629 -13.61592 -13.01486 -12.69935 -12.40391 -11.70983 -11.52875 -11.26380 -11.07194 -10.69213 -10.62764 -10.14327 -10.01631 -9.89144 -9.76283 -9.09791 -8.78410 -8.46916 -7.56831 -7.52931 -6.24618 -4.29933 1.49575 1.98423 2.62337 2.89842 3.17558 3.24711 3.36874 3.82239 4.27328 4.71575 4.81282 5.04143 5.09162 5.29171 5.50943 5.58369 5.68559 5.78426 5.98716 6.09010 6.11668 6.28770 6.41455 6.50368 6.61087 6.83011 6.95702 7.03594 7.42169 7.59051 8.23893 8.38126 8.76750 9.36118 10.85128 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.012076 C = 0.008399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.657508 B = 2318.108413 C = 3333.036277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.091 3.909 3 Si 0.890 3.110 4 H -0.265 1.265 5 H -0.305 1.305 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.080 0.920 9 C 0.064 3.936 10 H 0.056 0.944 11 C -0.095 4.095 12 C -0.126 4.126 13 C -0.106 4.106 14 C -0.131 4.131 15 C 0.138 3.862 16 N -0.257 5.257 17 N -0.547 5.547 18 C 0.622 3.378 19 N -0.781 5.781 20 S -0.685 6.685 21 H 0.264 0.736 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.406 0.594 31 H 0.420 0.580 32 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.628 -2.666 0.134 9.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.112 4.112 3 Si 0.722 3.278 4 H -0.192 1.192 5 H -0.234 1.234 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.098 0.902 9 C 0.043 3.957 10 H 0.073 0.927 11 C -0.134 4.134 12 C -0.163 4.163 13 C -0.144 4.144 14 C -0.171 4.171 15 C -0.055 4.055 16 N -0.062 5.062 17 N -0.269 5.269 18 C 0.256 3.744 19 N -0.324 5.324 20 S -0.562 6.562 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.252 0.748 31 H 0.255 0.745 32 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 7.799 -1.856 -0.829 8.060 hybrid contribution 0.915 0.615 0.686 1.299 sum 8.715 -1.241 -0.143 8.804 Atomic orbital electron populations 1.69918 1.06268 1.27016 1.49756 1.24937 0.94455 0.98741 0.93076 0.86869 0.79593 0.83721 0.77603 1.19232 1.23415 1.20417 1.20777 0.87392 0.94940 1.52317 0.90239 1.18554 0.97831 0.91413 0.87903 0.92689 1.21477 0.92766 0.96916 1.02246 1.21643 0.97816 1.00249 0.96622 1.21369 1.00393 0.93752 0.98927 1.21356 0.94665 0.99487 1.01642 1.26689 0.91439 0.89890 0.97505 1.74769 1.26112 1.11151 0.94179 1.46558 1.09429 1.54159 1.16792 1.21738 0.83878 0.80282 0.88469 1.43062 1.05085 1.57639 1.26628 1.93481 1.83434 1.64585 1.14719 0.92596 0.91178 0.92053 0.91926 0.92090 0.91652 0.91739 0.92083 0.89168 0.74818 0.74468 0.74160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.47 13.96 55.43 0.77 -23.69 16 2 C 0.09 2.33 5.08 -17.82 -0.09 2.24 16 3 Si 0.89 20.40 23.59 -169.99 -4.01 16.39 16 4 H -0.27 -5.88 4.97 56.52 0.28 -5.60 16 5 H -0.31 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -12.65 8.86 -34.44 -0.31 -12.96 16 8 H 0.08 2.14 8.00 -52.49 -0.42 1.72 16 9 C 0.06 1.26 1.97 -92.53 -0.18 1.08 16 10 H 0.06 1.10 7.23 -51.93 -0.38 0.72 16 11 C -0.10 -1.51 5.18 -26.63 -0.14 -1.65 16 12 C -0.13 -1.55 5.81 -26.77 -0.16 -1.70 16 13 C -0.11 -1.27 5.92 -26.86 -0.16 -1.43 16 14 C -0.13 -1.82 5.89 -27.71 -0.16 -1.98 16 15 C 0.14 2.52 4.94 -78.35 -0.39 2.13 16 16 N -0.26 -5.08 4.70 35.87 0.17 -4.92 16 17 N -0.55 -9.97 5.92 29.96 0.18 -9.80 16 18 C 0.62 11.79 7.77 -86.92 -0.68 11.11 16 19 N -0.78 -13.61 8.55 29.96 0.26 -13.35 16 20 S -0.69 -14.29 30.88 -107.50 -3.32 -17.61 16 21 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 22 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.79 5.57 -51.93 -0.29 0.50 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.41 6.63 6.13 -182.59 -1.12 5.51 16 31 H 0.42 8.00 7.18 -40.82 -0.29 7.70 16 32 H 0.42 6.25 8.81 -40.82 -0.36 5.89 16 LS Contribution 265.87 15.07 4.01 4.01 Total: -1.00 -29.57 265.87 -9.31 -38.88 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -5.10 Total: 13.27 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -2.26 Total: -3.17 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 1.38 Total: -51.76 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.01 Total: 16.39 kcal Atomic # 16 Polarization: -14.29 SS G_CDS: -3.32 Total: -17.61 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.57 -9.31 -38.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383925227.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.744 kcal (2) G-P(sol) polarization free energy of solvation -29.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds