Wall clock time and date at job start Mon Mar 30 2020 03:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99937 * 2 1 4 4 H 1.48494 * 109.47552 * 270.00279 * 3 2 1 5 5 H 1.48501 * 109.47060 * 30.00479 * 3 2 1 6 6 H 1.48505 * 109.46940 * 150.00332 * 3 2 1 7 7 C 1.37872 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00197 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99973 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.62371 * 60.38174 * 9 7 2 11 11 C 1.53226 * 109.78535 * 180.85983 * 9 7 2 12 12 C 1.52961 * 109.40679 * 174.43485 * 11 9 7 13 13 C 1.52955 * 109.81519 * 296.40225 * 12 11 9 14 14 C 1.52795 * 109.48385 * 63.46768 * 13 12 11 15 15 C 1.51265 * 109.62460 * 300.00328 * 9 7 2 16 16 N 1.28011 * 120.85121 * 8.71891 * 15 9 7 17 17 N 1.40100 * 119.99925 * 184.96708 * 16 15 9 18 18 C 1.34771 * 120.00262 * 174.57779 * 17 16 15 19 19 N 1.34783 * 119.99956 * 0.02562 * 18 17 16 20 20 S 1.71198 * 120.00469 * 179.97438 * 18 17 16 21 21 H 0.97008 * 120.00002 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.48096 * 294.41728 * 11 9 7 23 23 H 1.09006 * 109.48248 * 54.45332 * 11 9 7 24 24 H 1.09003 * 109.40781 * 56.50865 * 12 11 9 25 25 H 1.08997 * 109.41216 * 176.28999 * 12 11 9 26 26 H 1.09003 * 109.47952 * 183.57631 * 13 12 11 27 27 H 1.08996 * 109.48336 * 303.60075 * 13 12 11 28 28 H 1.09000 * 109.56251 * 185.79046 * 14 13 12 29 29 H 1.08997 * 109.46712 * 65.36143 * 14 13 12 30 30 H 0.97006 * 120.00194 * 354.57541 * 17 16 15 31 31 H 0.97005 * 119.99448 * 359.97438 * 19 18 17 32 32 H 0.96997 * 119.99925 * 179.72432 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8780 -0.6869 0.8914 11 6 4.0301 -2.6357 -0.0233 12 6 5.5533 -2.6258 -0.1636 13 6 5.9463 -2.0055 -1.5054 14 6 5.4990 -0.5449 -1.5421 15 6 4.0191 -0.4813 -1.2350 16 7 3.2161 0.1547 -2.0027 17 7 3.6870 0.7202 -3.1948 18 6 2.8235 1.2945 -4.0555 19 7 1.5068 1.3253 -3.7692 20 16 3.3990 1.9861 -5.5120 21 1 -0.4850 0.8401 0.0004 22 1 3.7538 -3.1358 0.9051 23 1 3.5907 -3.1672 -0.8674 24 1 5.9879 -2.0411 0.6471 25 1 5.9284 -3.6480 -0.1132 26 1 7.0281 -2.0588 -1.6275 27 1 5.4618 -2.5520 -2.3144 28 1 5.6854 -0.1309 -2.5330 29 1 6.0526 0.0234 -0.7948 30 1 4.6347 0.6985 -3.4008 31 1 1.1808 0.9337 -2.9437 32 1 0.8858 1.7421 -4.3867 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383925227.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:15 Heat of formation + Delta-G solvation = 27.526668 kcal Electronic energy + Delta-G solvation = -15991.370784 eV Core-core repulsion = 13498.837038 eV Total energy + Delta-G solvation = -2492.533747 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.85302 -38.94105 -36.04308 -34.99262 -32.95365 -32.22170 -29.10553 -26.41678 -24.91517 -22.82395 -22.27404 -21.14353 -19.86860 -18.80457 -18.29583 -17.58137 -16.56394 -16.35401 -15.94117 -15.48717 -15.05367 -14.79363 -14.56703 -14.26005 -13.74659 -13.28252 -12.76110 -12.64462 -12.58073 -12.16167 -11.93354 -11.67469 -11.49733 -11.39130 -11.26105 -10.79834 -10.44808 -10.00324 -9.17173 -9.16081 -8.23581 -6.30812 0.01083 0.43104 1.13237 1.26789 1.34402 1.41848 1.72794 2.34578 2.39215 3.10438 3.55946 3.76404 4.02701 4.09031 4.32779 4.50221 4.52235 4.66548 4.77791 5.02096 5.05221 5.13049 5.18165 5.29947 5.33741 5.50289 5.54191 5.61372 5.69370 6.17616 6.30385 6.71471 6.98748 7.38459 8.89710 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.012076 C = 0.008399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.657508 B = 2318.108413 C = 3333.036277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.051 3.949 3 Si 0.945 3.055 4 H -0.256 1.256 5 H -0.327 1.327 6 H -0.264 1.264 7 C -0.516 4.516 8 H 0.040 0.960 9 C 0.059 3.941 10 H 0.060 0.940 11 C -0.093 4.093 12 C -0.119 4.119 13 C -0.103 4.103 14 C -0.129 4.129 15 C 0.139 3.861 16 N -0.292 5.292 17 N -0.536 5.536 18 C 0.627 3.373 19 N -0.772 5.772 20 S -0.721 6.721 21 H 0.262 0.738 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.415 0.585 31 H 0.415 0.585 32 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.510 -2.823 0.266 11.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.148 4.148 3 Si 0.777 3.223 4 H -0.183 1.183 5 H -0.257 1.257 6 H -0.188 1.188 7 C -0.553 4.553 8 H 0.059 0.941 9 C 0.037 3.963 10 H 0.078 0.922 11 C -0.131 4.131 12 C -0.156 4.156 13 C -0.141 4.141 14 C -0.169 4.169 15 C -0.053 4.053 16 N -0.099 5.099 17 N -0.259 5.259 18 C 0.259 3.741 19 N -0.315 5.315 20 S -0.599 6.599 21 H 0.072 0.928 22 H 0.088 0.912 23 H 0.065 0.935 24 H 0.095 0.905 25 H 0.104 0.896 26 H 0.118 0.882 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.130 0.870 30 H 0.263 0.737 31 H 0.249 0.751 32 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 10.717 -2.034 -0.704 10.931 hybrid contribution -0.034 0.524 0.727 0.897 sum 10.682 -1.510 0.023 10.789 Atomic orbital electron populations 1.70046 1.07949 1.27538 1.52304 1.25510 0.94750 1.01467 0.93068 0.85973 0.78646 0.79897 0.77808 1.18251 1.25744 1.18845 1.21054 0.90364 0.93152 1.50758 0.94128 1.18553 0.94572 0.94248 0.88902 0.92215 1.21440 0.95889 0.94066 1.01738 1.21609 0.94345 1.02232 0.97424 1.21409 1.02431 0.91946 0.98309 1.21485 0.91116 1.01436 1.02874 1.26711 0.94102 0.88359 0.96087 1.74695 1.27405 1.12673 0.95083 1.46418 1.09801 1.53476 1.16223 1.21520 0.84228 0.80298 0.88021 1.43049 1.04952 1.57028 1.26439 1.93544 1.83822 1.66203 1.16298 0.92839 0.91164 0.93526 0.90515 0.89643 0.88173 0.92546 0.90965 0.87017 0.73720 0.75091 0.72874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.03 13.96 21.45 0.30 -52.73 16 2 C 0.05 2.63 5.08 84.65 0.43 3.06 16 3 Si 0.95 42.07 23.59 68.60 1.62 43.68 16 4 H -0.26 -10.87 4.97 99.48 0.49 -10.38 16 5 H -0.33 -15.59 7.11 99.48 0.71 -14.88 16 6 H -0.26 -10.93 6.54 99.48 0.65 -10.28 16 7 C -0.52 -25.58 8.86 25.60 0.23 -25.35 16 8 H 0.04 2.28 8.00 -2.91 -0.02 2.25 16 9 C 0.06 2.20 1.97 -12.03 -0.02 2.18 16 10 H 0.06 2.23 7.23 -2.39 -0.02 2.22 16 11 C -0.09 -2.76 5.18 30.66 0.16 -2.60 16 12 C -0.12 -2.41 5.81 30.57 0.18 -2.23 16 13 C -0.10 -1.97 5.92 30.51 0.18 -1.79 16 14 C -0.13 -3.02 5.89 29.96 0.18 -2.84 16 15 C 0.14 4.74 4.94 46.89 0.23 4.97 16 16 N -0.29 -11.07 4.70 -40.33 -0.19 -11.26 16 17 N -0.54 -18.46 5.92 -59.12 -0.35 -18.81 16 18 C 0.63 22.91 7.77 179.05 1.39 24.30 16 19 N -0.77 -26.31 8.55 -59.12 -0.51 -26.82 16 20 S -0.72 -29.22 30.88 -56.49 -1.74 -30.97 16 21 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 22 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 23 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 24 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 26 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.57 5.57 -2.39 -0.01 1.55 16 29 H 0.11 2.23 8.14 -2.39 -0.02 2.22 16 30 H 0.42 12.42 6.13 -213.31 -1.31 11.12 16 31 H 0.41 15.67 7.18 -92.70 -0.67 15.01 16 32 H 0.44 12.53 8.81 -92.71 -0.82 11.71 16 Total: -1.00 -64.71 265.87 0.18 -64.53 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -1.90 Total: 32.69 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 2.95 Total: -0.31 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -0.75 Total: -109.62 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.62 Total: 43.68 kcal Atomic # 16 Polarization: -29.22 SS G_CDS: -1.74 Total: -30.97 kcal Total: -64.71 0.18 -64.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383925227.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.055 kcal (2) G-P(sol) polarization free energy of solvation -64.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds