Wall clock time and date at job start Mon Mar 30 2020 03:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40424 * 126.83586 * 2 1 4 4 C 1.30590 * 107.01130 * 179.89264 * 3 2 1 5 5 N 1.33349 * 109.13649 * 0.37521 * 4 3 2 6 6 C 1.31642 * 109.69498 * 359.75796 * 5 4 3 7 7 S 1.76197 * 126.08900 * 179.97438 * 6 5 4 8 8 C 1.81003 * 99.99761 * 0.02562 * 7 6 5 9 9 C 1.53005 * 109.46967 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46935 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46935 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47240 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00122 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00334 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00167 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99874 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47292 * 89.99868 * 16 14 12 18 18 H 1.48499 * 109.47429 * 210.00044 * 16 14 12 19 19 H 1.48502 * 109.47125 * 329.99869 * 16 14 12 20 20 H 1.09001 * 109.47060 * 269.68771 * 1 2 3 21 21 H 1.09004 * 109.47073 * 29.68260 * 1 2 3 22 22 H 1.09000 * 109.47212 * 149.68343 * 1 2 3 23 23 H 1.07993 * 125.43337 * 180.11597 * 4 3 2 24 24 H 1.08996 * 109.46996 * 299.99133 * 8 7 6 25 25 H 1.08995 * 109.47483 * 59.99795 * 8 7 6 26 26 H 1.09004 * 109.47133 * 299.99881 * 9 8 7 27 27 H 1.09003 * 109.46929 * 59.99947 * 9 8 7 28 28 H 1.08996 * 109.47228 * 299.99379 * 10 9 8 29 29 H 1.08995 * 109.47282 * 60.00060 * 10 9 8 30 30 H 1.09004 * 109.47133 * 300.00146 * 11 10 9 31 31 H 1.09003 * 109.46929 * 60.00212 * 11 10 9 32 32 H 0.96999 * 119.99793 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3069 1.1239 0.0000 4 6 3.5354 0.6810 0.0023 5 7 3.5194 -0.6524 -0.0044 6 6 2.2748 -1.0811 -0.0060 7 16 1.7573 -2.7653 -0.0149 8 6 3.3689 -3.5893 -0.0197 9 6 3.1663 -5.1059 -0.0272 10 6 4.5286 -5.8023 -0.0319 11 6 4.3260 -7.3189 -0.0387 12 6 5.6677 -8.0049 -0.0440 13 1 6.5744 -7.4180 -0.0430 14 6 5.7380 -9.3819 -0.0500 15 7 6.9090 -9.9806 -0.0551 16 14 4.1699 -10.3971 -0.0524 17 1 3.7526 -10.6600 -1.4531 18 1 4.4142 -11.6869 0.6417 19 1 3.0964 -9.6513 0.6523 20 1 -0.3633 -0.0056 1.0277 21 1 -0.3633 0.8929 -0.5089 22 1 -0.3634 -0.8871 -0.5187 23 1 4.4228 1.2964 0.0048 24 1 3.9260 -3.2925 -0.9083 25 1 3.9265 -3.3020 0.8716 26 1 2.6092 -5.4024 0.8616 27 1 2.6085 -5.3935 -0.9184 28 1 5.0852 -5.5058 -0.9209 29 1 5.0867 -5.5147 0.8590 30 1 3.7695 -7.6151 0.8505 31 1 3.7676 -7.6068 -0.9295 32 1 6.9583 -10.9493 -0.0590 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385181313.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:35 Heat of formation + Delta-G solvation = 68.872466 kcal Electronic energy + Delta-G solvation = -14156.000524 eV Core-core repulsion = 11665.259665 eV Total energy + Delta-G solvation = -2490.740858 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.07804 -35.44541 -34.28940 -32.62700 -31.51833 -29.98352 -27.62435 -25.58033 -22.92563 -22.27645 -21.44471 -20.14484 -17.96433 -16.65925 -16.34125 -16.19443 -15.28599 -14.84026 -14.59318 -14.23921 -13.58498 -13.41778 -13.08656 -12.86545 -12.42585 -12.14540 -11.79355 -11.38625 -11.13907 -10.74889 -10.63062 -10.46013 -10.26995 -9.99401 -9.93709 -9.73954 -9.55325 -9.17661 -8.53201 -7.99577 -6.03491 -4.01631 0.84100 1.25241 1.94383 2.26265 2.67686 3.31129 3.38617 3.41843 4.18803 4.43444 4.45750 4.76192 4.97207 5.03071 5.06175 5.06590 5.30637 5.60313 5.82248 5.93001 5.96935 6.19811 6.20583 6.26596 6.51907 6.62838 6.88153 7.29619 7.42280 7.74528 7.79971 8.54768 9.01841 9.58921 11.10054 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.056836 B = 0.003800 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.527087 B = 7366.340333 C = 7822.513318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.369 5.369 3 N -0.322 5.322 4 C 0.209 3.791 5 N -0.541 5.541 6 C 0.257 3.743 7 S -0.011 6.011 8 C -0.091 4.091 9 C -0.110 4.110 10 C -0.095 4.095 11 C -0.014 4.014 12 C -0.521 4.521 13 H 0.072 0.928 14 C 0.065 3.935 15 N -0.904 5.904 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.265 1.265 20 H 0.083 0.917 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.220 0.780 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.016 0.984 31 H 0.012 0.988 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.010 18.758 0.080 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.162 5.162 3 N -0.151 5.151 4 C -0.096 4.096 5 N -0.273 5.273 6 C -0.126 4.126 7 S 0.217 5.783 8 C -0.240 4.240 9 C -0.150 4.150 10 C -0.135 4.135 11 C -0.052 4.052 12 C -0.559 4.559 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.543 5.543 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.190 1.190 20 H 0.101 0.899 21 H 0.113 0.887 22 H 0.113 0.887 23 H 0.236 0.764 24 H 0.116 0.884 25 H 0.117 0.883 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.033 18.726 0.078 24.014 hybrid contribution 0.386 -0.093 -0.012 0.397 sum -14.647 18.634 0.066 23.701 Atomic orbital electron populations 1.22004 0.73349 1.05102 1.04171 1.50171 1.07789 1.02588 1.55611 1.77920 1.02153 1.07767 1.27279 1.25989 0.95735 0.90385 0.97490 1.71080 1.17995 1.11516 1.26712 1.26440 0.89204 0.96742 1.00257 1.85676 1.14584 0.86326 1.91666 1.23817 0.93783 0.98770 1.07592 1.21587 1.00999 0.89587 1.02808 1.21449 0.93154 0.97163 1.01701 1.19586 0.97835 0.91442 0.96304 1.21161 0.92324 0.91718 1.50707 0.91002 1.25048 0.95958 0.97989 0.94603 1.69920 1.23714 1.09480 1.51226 0.86765 0.84319 0.79631 0.78489 1.20312 1.21429 1.18988 0.89873 0.88669 0.88737 0.76371 0.88356 0.88341 0.91292 0.91313 0.92346 0.92324 0.96558 0.97003 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 11.34 59.85 0.68 1.35 16 2 N -0.37 -4.32 4.06 -68.15 -0.28 -4.60 16 3 N -0.32 -4.10 12.68 29.29 0.37 -3.73 16 4 C 0.21 2.53 13.02 -91.82 -1.20 1.33 16 5 N -0.54 -7.61 10.57 -14.70 -0.16 -7.76 16 6 C 0.26 3.34 8.01 -89.39 -0.72 2.63 16 7 S -0.01 -0.13 21.67 -107.50 -2.33 -2.46 16 8 C -0.09 -1.19 5.21 37.16 0.19 -0.99 16 9 C -0.11 -1.61 5.22 -26.73 -0.14 -1.75 16 10 C -0.09 -1.78 5.15 -26.73 -0.14 -1.92 16 11 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 12 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 13 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 14 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 15 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 16 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 20 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.09 0.54 7.76 -51.93 -0.40 0.13 16 23 H 0.22 1.75 8.06 -52.49 -0.42 1.33 16 24 H 0.10 1.32 8.14 -51.92 -0.42 0.90 16 25 H 0.10 1.32 8.14 -51.92 -0.42 0.90 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 31 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 290.30 15.07 4.37 4.37 Total: -1.00 -33.19 290.30 -8.33 -41.52 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -4.56 Total: -3.94 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.86 Total: -13.13 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.71 Total: -43.29 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.33 Total: -2.46 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.19 -8.33 -41.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385181313.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.392 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds