Wall clock time and date at job start Mon Mar 30 2020 03:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40424 * 126.83586 * 2 1 4 4 C 1.30590 * 107.01130 * 179.89264 * 3 2 1 5 5 N 1.33349 * 109.13649 * 0.37521 * 4 3 2 6 6 C 1.31642 * 109.69498 * 359.75796 * 5 4 3 7 7 S 1.76197 * 126.08900 * 179.97438 * 6 5 4 8 8 C 1.81003 * 99.99761 * 0.02562 * 7 6 5 9 9 C 1.53005 * 109.46967 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46935 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46935 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47240 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00122 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00334 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00167 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 119.99874 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47292 * 89.99868 * 16 14 12 18 18 H 1.48499 * 109.47429 * 210.00044 * 16 14 12 19 19 H 1.48502 * 109.47125 * 329.99869 * 16 14 12 20 20 H 1.09001 * 109.47060 * 269.68771 * 1 2 3 21 21 H 1.09004 * 109.47073 * 29.68260 * 1 2 3 22 22 H 1.09000 * 109.47212 * 149.68343 * 1 2 3 23 23 H 1.07993 * 125.43337 * 180.11597 * 4 3 2 24 24 H 1.08996 * 109.46996 * 299.99133 * 8 7 6 25 25 H 1.08995 * 109.47483 * 59.99795 * 8 7 6 26 26 H 1.09004 * 109.47133 * 299.99881 * 9 8 7 27 27 H 1.09003 * 109.46929 * 59.99947 * 9 8 7 28 28 H 1.08996 * 109.47228 * 299.99379 * 10 9 8 29 29 H 1.08995 * 109.47282 * 60.00060 * 10 9 8 30 30 H 1.09004 * 109.47133 * 300.00146 * 11 10 9 31 31 H 1.09003 * 109.46929 * 60.00212 * 11 10 9 32 32 H 0.96999 * 119.99793 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3069 1.1239 0.0000 4 6 3.5354 0.6810 0.0023 5 7 3.5194 -0.6524 -0.0044 6 6 2.2748 -1.0811 -0.0060 7 16 1.7573 -2.7653 -0.0149 8 6 3.3689 -3.5893 -0.0197 9 6 3.1663 -5.1059 -0.0272 10 6 4.5286 -5.8023 -0.0319 11 6 4.3260 -7.3189 -0.0387 12 6 5.6677 -8.0049 -0.0440 13 1 6.5744 -7.4180 -0.0430 14 6 5.7380 -9.3819 -0.0500 15 7 6.9090 -9.9806 -0.0551 16 14 4.1699 -10.3971 -0.0524 17 1 3.7526 -10.6600 -1.4531 18 1 4.4142 -11.6869 0.6417 19 1 3.0964 -9.6513 0.6523 20 1 -0.3633 -0.0056 1.0277 21 1 -0.3633 0.8929 -0.5089 22 1 -0.3634 -0.8871 -0.5187 23 1 4.4228 1.2964 0.0048 24 1 3.9260 -3.2925 -0.9083 25 1 3.9265 -3.3020 0.8716 26 1 2.6092 -5.4024 0.8616 27 1 2.6085 -5.3935 -0.9184 28 1 5.0852 -5.5058 -0.9209 29 1 5.0867 -5.5147 0.8590 30 1 3.7695 -7.6151 0.8505 31 1 3.7676 -7.6068 -0.9295 32 1 6.9583 -10.9493 -0.0590 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385181313.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:35 Heat of formation + Delta-G solvation = 49.255672 kcal Electronic energy + Delta-G solvation = -14156.851172 eV Core-core repulsion = 11665.259665 eV Total energy + Delta-G solvation = -2491.591506 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.96567 -36.93551 -35.11084 -34.61189 -32.46390 -31.67554 -28.32066 -27.28028 -24.05870 -23.24720 -22.73710 -21.72777 -18.93818 -18.69826 -17.20128 -17.07382 -16.52203 -16.30135 -15.74961 -15.50695 -14.73849 -14.60722 -14.16941 -14.13173 -13.80307 -13.61837 -13.00617 -12.87827 -12.60340 -12.28688 -11.82719 -11.70730 -11.46334 -11.38637 -11.32222 -11.21226 -11.16813 -10.82190 -10.73045 -8.88719 -8.26306 -6.30685 -0.08100 0.34719 0.95605 1.39527 1.41663 1.51406 1.53775 1.76036 2.39842 3.09416 3.47601 3.63134 3.87877 3.96606 4.29055 4.33211 4.35768 4.51441 4.56277 4.76517 4.82992 5.06976 5.09868 5.14357 5.18898 5.35416 5.47470 5.58968 5.66057 5.71040 6.32395 6.78419 6.84597 7.34121 8.90805 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.056836 B = 0.003800 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.527087 B = 7366.340333 C = 7822.513318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.368 5.368 3 N -0.339 5.339 4 C 0.202 3.798 5 N -0.571 5.571 6 C 0.238 3.762 7 S 0.032 5.968 8 C -0.093 4.093 9 C -0.098 4.098 10 C -0.090 4.090 11 C -0.013 4.013 12 C -0.535 4.535 13 H 0.029 0.971 14 C -0.001 4.001 15 N -0.956 5.956 16 Si 0.955 3.045 17 H -0.266 1.266 18 H -0.287 1.287 19 H -0.241 1.241 20 H 0.099 0.901 21 H 0.108 0.892 22 H 0.109 0.891 23 H 0.248 0.752 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.024 0.976 31 H 0.022 0.978 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.956 19.248 0.085 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.161 5.161 3 N -0.169 5.169 4 C -0.102 4.102 5 N -0.304 5.304 6 C -0.146 4.146 7 S 0.261 5.739 8 C -0.242 4.242 9 C -0.137 4.137 10 C -0.130 4.130 11 C -0.051 4.051 12 C -0.573 4.573 13 H 0.047 0.953 14 C -0.198 4.198 15 N -0.597 5.597 16 Si 0.778 3.222 17 H -0.191 1.191 18 H -0.213 1.213 19 H -0.164 1.164 20 H 0.117 0.883 21 H 0.127 0.873 22 H 0.128 0.872 23 H 0.264 0.736 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.006 19.245 0.082 26.355 hybrid contribution 1.362 -0.155 -0.013 1.371 sum -16.644 19.090 0.069 25.327 Atomic orbital electron populations 1.22396 0.70980 1.06568 1.05671 1.50480 1.09134 1.01912 1.54614 1.77862 1.02596 1.08630 1.27811 1.26611 0.96629 0.90158 0.96801 1.71049 1.19000 1.12616 1.27735 1.26680 0.89497 0.97634 1.00771 1.85391 1.11954 0.85037 1.91541 1.23611 0.95361 0.98092 1.07141 1.21369 0.98310 0.90154 1.03892 1.21293 0.95789 0.94853 1.01075 1.19561 0.94815 0.93861 0.96858 1.21582 0.93486 0.92069 1.50164 0.95299 1.26111 0.99965 0.99535 0.94145 1.70090 1.26647 1.10000 1.52921 0.85591 0.79800 0.77592 0.79261 1.19109 1.21266 1.16418 0.88311 0.87302 0.87250 0.73581 0.88909 0.88920 0.90215 0.90156 0.93086 0.93107 0.95803 0.95935 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 11.34 127.77 1.45 2.42 16 2 N -0.37 -7.97 4.06 -369.53 -1.50 -9.47 16 3 N -0.34 -8.19 12.68 -61.25 -0.78 -8.97 16 4 C 0.20 4.67 13.02 180.77 2.35 7.02 16 5 N -0.57 -15.50 10.57 -200.41 -2.12 -17.62 16 6 C 0.24 5.79 8.01 179.92 1.44 7.23 16 7 S 0.03 0.67 21.67 -56.49 -1.22 -0.56 16 8 C -0.09 -2.28 5.21 71.98 0.38 -1.91 16 9 C -0.10 -2.64 5.22 30.60 0.16 -2.48 16 10 C -0.09 -3.32 5.15 30.60 0.16 -3.17 16 11 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 12 C -0.53 -30.96 9.66 25.60 0.25 -30.71 16 13 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 14 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 15 N -0.96 -60.61 13.96 21.45 0.30 -60.31 16 16 Si 0.95 43.80 27.47 68.60 1.88 45.69 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 20 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 21 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 22 H 0.11 0.93 7.76 -2.39 -0.02 0.91 16 23 H 0.25 3.64 8.06 -2.91 -0.02 3.62 16 24 H 0.09 2.39 8.14 -2.40 -0.02 2.37 16 25 H 0.09 2.39 8.14 -2.40 -0.02 2.37 16 26 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.02 1.04 7.20 -2.38 -0.02 1.02 16 31 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 32 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -72.42 290.30 4.37 -68.05 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.04 Total: 4.87 kcal Atomic # 6 Polarization: -28.46 SS G_CDS: 6.77 Total: -21.69 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -4.10 Total: -96.36 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.69 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -1.22 Total: -0.56 kcal Total: -72.42 4.37 -68.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385181313.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.305 kcal (2) G-P(sol) polarization free energy of solvation -72.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds