Wall clock time and date at job start Mon Mar 30 2020 04:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 110.54277 * 2 1 4 4 C 1.54231 * 110.60467 * 237.14979 * 2 1 3 5 5 C 1.51310 * 103.55059 * 241.48552 * 4 2 1 6 6 O 1.21233 * 125.39240 * 179.97438 * 5 4 2 7 7 N 1.33874 * 109.21135 * 359.97438 * 5 4 2 8 8 C 1.46506 * 122.76443 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46967 * 90.02718 * 8 7 5 10 10 O 1.42899 * 109.46889 * 65.00094 * 9 8 7 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.46972 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99963 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00270 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00302 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99832 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47310 * 89.99428 * 16 14 12 18 18 H 1.48491 * 109.47296 * 209.99911 * 16 14 12 19 19 H 1.48502 * 109.46905 * 329.99956 * 16 14 12 20 20 C 1.33876 * 114.47357 * 0.27589 * 7 5 4 21 21 O 1.21227 * 125.39549 * 179.70907 * 20 7 5 22 22 H 1.08999 * 109.46993 * 182.84900 * 1 2 3 23 23 H 1.08996 * 109.46775 * 302.85134 * 1 2 3 24 24 H 1.08999 * 109.47093 * 62.84941 * 1 2 3 25 25 H 1.08995 * 110.60687 * 122.96559 * 4 2 1 26 26 H 1.08999 * 110.73905 * 0.06459 * 4 2 1 27 27 H 1.09004 * 109.46913 * 330.02952 * 8 7 5 28 28 H 1.08993 * 109.46958 * 210.03165 * 8 7 5 29 29 H 1.08997 * 109.47286 * 305.00078 * 9 8 7 30 30 H 1.08997 * 109.46848 * 185.00176 * 9 8 7 31 31 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 32 32 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 33 33 H 0.97002 * 119.99998 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0729 -0.7831 -1.2128 5 6 2.8549 -1.9149 -0.5828 6 8 3.4521 -2.7784 -1.1891 7 7 2.7829 -1.8118 0.7500 8 6 3.4381 -2.7593 1.6551 9 6 4.8522 -2.2680 1.9712 10 8 4.7783 -1.0400 2.6983 11 6 6.0519 -0.4928 3.0458 12 6 5.8554 0.7935 3.8060 13 1 4.8577 1.1570 4.0036 14 6 6.9492 1.5069 4.2484 15 7 6.7777 2.6296 4.9113 16 14 8.6748 0.8793 3.9048 17 1 9.1524 1.4279 2.6100 18 1 9.5859 1.3150 4.9933 19 1 8.6577 -0.6041 3.8376 20 6 2.0585 -0.7745 1.1876 21 8 1.8595 -0.4981 2.3511 22 1 -0.3633 -1.0264 0.0511 23 1 -0.3633 0.5575 0.8633 24 1 -0.3633 0.4689 -0.9144 25 1 2.7275 -0.1528 -1.8146 26 1 1.2545 -1.1727 -1.8183 27 1 3.4916 -3.7386 1.1793 28 1 2.8647 -2.8350 2.5789 29 1 5.3974 -2.1073 1.0412 30 1 5.3706 -3.0153 2.5719 31 1 6.5949 -1.2034 3.6690 32 1 6.6223 -0.2954 2.1382 33 1 7.5473 3.1313 5.2228 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385252224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:56 Heat of formation + Delta-G solvation = -113.444290 kcal Electronic energy + Delta-G solvation = -17624.450477 eV Core-core repulsion = 14650.758149 eV Total energy + Delta-G solvation = -2973.692328 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.80303 -38.39232 -37.09157 -35.72557 -34.50880 -32.62203 -30.25572 -28.21070 -27.32907 -24.70882 -22.96629 -21.91768 -21.49821 -19.34529 -17.35735 -16.97039 -16.51907 -16.18526 -15.53756 -15.22084 -14.68135 -14.33643 -14.26877 -14.03174 -13.75733 -13.26383 -12.87815 -12.61296 -12.48081 -12.36868 -11.88694 -11.58548 -11.35600 -11.15420 -10.91191 -10.78453 -10.33841 -9.87747 -9.77257 -9.50722 -9.19040 -8.89757 -8.50323 -6.11278 -4.10375 1.67134 2.62666 2.90013 3.23607 3.30756 3.32235 4.02678 4.22443 4.34508 4.35103 4.53139 4.69958 5.11135 5.19245 5.22589 5.29781 5.32476 5.34730 5.49736 5.57425 5.67346 5.73378 5.87814 5.91695 6.05981 6.55368 6.96124 6.98883 7.45826 7.58070 7.95753 7.99069 8.64393 9.02126 9.47647 11.01712 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.029163 B = 0.006446 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.876016 B = 4342.896729 C = 4772.824280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 H 0.126 0.874 4 C -0.154 4.154 5 C 0.528 3.472 6 O -0.496 6.496 7 N -0.567 5.567 8 C 0.104 3.896 9 C 0.040 3.960 10 O -0.371 6.371 11 C 0.169 3.831 12 C -0.517 4.517 13 H 0.084 0.916 14 C 0.073 3.927 15 N -0.894 5.894 16 Si 0.875 3.125 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.267 1.267 20 C 0.528 3.472 21 O -0.448 6.448 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.119 0.881 26 H 0.118 0.882 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.004 0.996 32 H -0.004 1.004 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.590 -8.338 -12.785 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 H 0.144 0.856 4 C -0.194 4.194 5 C 0.317 3.683 6 O -0.369 6.369 7 N -0.310 5.310 8 C -0.017 4.017 9 C -0.038 4.038 10 O -0.290 6.290 11 C 0.094 3.906 12 C -0.555 4.555 13 H 0.102 0.898 14 C -0.129 4.129 15 N -0.533 5.533 16 Si 0.701 3.299 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.192 1.192 20 C 0.315 3.685 21 O -0.316 6.316 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.137 0.863 26 H 0.136 0.864 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.021 0.979 32 H 0.014 0.986 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.445 -8.413 -12.265 18.174 hybrid contribution 1.487 -0.362 -0.146 1.538 sum -8.958 -8.775 -12.412 17.643 Atomic orbital electron populations 1.21678 0.91178 1.02799 1.03586 1.22077 0.98943 1.01862 0.92150 0.85608 1.22585 1.01756 0.96295 0.98729 1.20793 0.79548 0.85999 0.81971 1.90743 1.42162 1.37343 1.66667 1.46661 1.47175 1.28266 1.08893 1.21845 0.93951 0.91576 0.94301 1.22679 0.95121 0.89819 0.96228 1.88016 1.31585 1.35537 1.73875 1.20615 0.81474 0.94548 0.93957 1.20884 0.96079 1.04018 1.34544 0.89820 1.24761 0.98776 0.94666 0.94706 1.69877 1.30839 1.14882 1.37673 0.86870 0.84764 0.79750 0.78471 1.19972 1.20695 1.19162 1.20628 0.77187 0.80074 0.90563 1.90825 1.54889 1.66910 1.18932 0.92247 0.90823 0.90850 0.86285 0.86420 0.88173 0.88155 0.93870 0.92503 0.97874 0.98617 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 9.09 37.16 0.34 -0.74 16 2 C -0.13 -1.34 3.70 -90.82 -0.34 -1.68 16 3 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 4 C -0.15 -1.37 6.67 -26.94 -0.18 -1.55 16 5 C 0.53 7.01 8.08 -11.09 -0.09 6.93 16 6 O -0.50 -7.81 17.48 5.60 0.10 -7.71 16 7 N -0.57 -8.45 2.53 -115.34 -0.29 -8.74 16 8 C 0.10 1.56 5.97 -4.04 -0.02 1.54 16 9 C 0.04 0.73 6.28 37.16 0.23 0.96 16 10 O -0.37 -8.89 9.69 -35.23 -0.34 -9.23 16 11 C 0.17 4.43 4.76 36.01 0.17 4.60 16 12 C -0.52 -15.79 9.99 -34.44 -0.34 -16.14 16 13 H 0.08 2.83 8.06 -52.48 -0.42 2.41 16 14 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 15 N -0.89 -28.00 13.96 55.43 0.77 -27.22 16 16 Si 0.87 21.75 27.47 -169.99 -4.67 17.08 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 20 C 0.53 8.25 7.03 -11.09 -0.08 8.17 16 21 O -0.45 -8.99 17.24 5.60 0.10 -8.89 16 22 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.12 0.73 7.75 -51.93 -0.40 0.32 16 27 H 0.10 1.23 7.83 -51.93 -0.41 0.82 16 28 H 0.10 1.51 7.82 -51.93 -0.41 1.10 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.00 0.09 7.20 -51.93 -0.37 -0.28 16 32 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 33 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 287.66 15.07 4.33 4.33 Total: -1.00 -36.30 287.66 -4.94 -41.24 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -4.53 Total: -5.02 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -0.41 Total: 4.17 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.48 Total: -35.96 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.15 Total: -25.84 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -36.30 -4.94 -41.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385252224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.209 kcal (2) G-P(sol) polarization free energy of solvation -36.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds