Wall clock time and date at job start Mon Mar 30 2020 04:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 110.54277 * 2 1 4 4 C 1.54231 * 110.60467 * 237.14979 * 2 1 3 5 5 C 1.51310 * 103.55059 * 241.48552 * 4 2 1 6 6 O 1.21233 * 125.39240 * 179.97438 * 5 4 2 7 7 N 1.33874 * 109.21135 * 359.97438 * 5 4 2 8 8 C 1.46506 * 122.76443 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46967 * 90.02718 * 8 7 5 10 10 O 1.42899 * 109.46889 * 65.00094 * 9 8 7 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.46972 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99963 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00270 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00302 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99832 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47310 * 89.99428 * 16 14 12 18 18 H 1.48491 * 109.47296 * 209.99911 * 16 14 12 19 19 H 1.48502 * 109.46905 * 329.99956 * 16 14 12 20 20 C 1.33876 * 114.47357 * 0.27589 * 7 5 4 21 21 O 1.21227 * 125.39549 * 179.70907 * 20 7 5 22 22 H 1.08999 * 109.46993 * 182.84900 * 1 2 3 23 23 H 1.08996 * 109.46775 * 302.85134 * 1 2 3 24 24 H 1.08999 * 109.47093 * 62.84941 * 1 2 3 25 25 H 1.08995 * 110.60687 * 122.96559 * 4 2 1 26 26 H 1.08999 * 110.73905 * 0.06459 * 4 2 1 27 27 H 1.09004 * 109.46913 * 330.02952 * 8 7 5 28 28 H 1.08993 * 109.46958 * 210.03165 * 8 7 5 29 29 H 1.08997 * 109.47286 * 305.00078 * 9 8 7 30 30 H 1.08997 * 109.46848 * 185.00176 * 9 8 7 31 31 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 32 32 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 33 33 H 0.97002 * 119.99998 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0729 -0.7831 -1.2128 5 6 2.8549 -1.9149 -0.5828 6 8 3.4521 -2.7784 -1.1891 7 7 2.7829 -1.8118 0.7500 8 6 3.4381 -2.7593 1.6551 9 6 4.8522 -2.2680 1.9712 10 8 4.7783 -1.0400 2.6983 11 6 6.0519 -0.4928 3.0458 12 6 5.8554 0.7935 3.8060 13 1 4.8577 1.1570 4.0036 14 6 6.9492 1.5069 4.2484 15 7 6.7777 2.6296 4.9113 16 14 8.6748 0.8793 3.9048 17 1 9.1524 1.4279 2.6100 18 1 9.5859 1.3150 4.9933 19 1 8.6577 -0.6041 3.8376 20 6 2.0585 -0.7745 1.1876 21 8 1.8595 -0.4981 2.3511 22 1 -0.3633 -1.0264 0.0511 23 1 -0.3633 0.5575 0.8633 24 1 -0.3633 0.4689 -0.9144 25 1 2.7275 -0.1528 -1.8146 26 1 1.2545 -1.1727 -1.8183 27 1 3.4916 -3.7386 1.1793 28 1 2.8647 -2.8350 2.5789 29 1 5.3974 -2.1073 1.0412 30 1 5.3706 -3.0153 2.5719 31 1 6.5949 -1.2034 3.6690 32 1 6.6223 -0.2954 2.1382 33 1 7.5473 3.1313 5.2228 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385252224.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:55 Heat of formation + Delta-G solvation = -140.778085 kcal Electronic energy + Delta-G solvation = -17625.635759 eV Core-core repulsion = 14650.758149 eV Total energy + Delta-G solvation = -2974.877611 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.90261 -39.60389 -38.82824 -36.93096 -35.65003 -34.81348 -31.62326 -29.84898 -28.59567 -25.77460 -24.28546 -23.99463 -22.51912 -20.46876 -19.14024 -18.50348 -17.75079 -17.53423 -17.16790 -16.66928 -16.37180 -15.77940 -15.40752 -15.23276 -14.86093 -14.77778 -14.47482 -14.01489 -13.67231 -13.40510 -13.22254 -12.88605 -12.83622 -12.61666 -12.43971 -12.09454 -11.87497 -11.45430 -11.41334 -10.98401 -10.94372 -10.78581 -10.48204 -8.41490 -6.50357 0.56122 1.28803 1.32257 1.43239 1.54059 1.79973 2.24848 2.89994 2.91547 3.18270 3.26894 3.53672 3.91462 3.96790 4.03819 4.25279 4.31492 4.39720 4.42803 4.57269 4.68779 4.72567 4.74646 4.90883 4.98144 5.03318 5.30204 5.36621 5.83078 5.90363 6.37756 6.53311 6.64507 6.82360 7.13716 8.75945 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.029163 B = 0.006446 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.876016 B = 4342.896729 C = 4772.824280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.121 4.121 3 H 0.130 0.870 4 C -0.136 4.136 5 C 0.524 3.476 6 O -0.520 6.520 7 N -0.576 5.576 8 C 0.103 3.897 9 C 0.033 3.967 10 O -0.398 6.398 11 C 0.180 3.820 12 C -0.546 4.546 13 H 0.024 0.976 14 C 0.014 3.986 15 N -0.940 5.940 16 Si 0.957 3.043 17 H -0.258 1.258 18 H -0.270 1.270 19 H -0.247 1.247 20 C 0.517 3.483 21 O -0.509 6.509 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.109 0.891 25 H 0.142 0.858 26 H 0.157 0.843 27 H 0.131 0.869 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.014 0.986 32 H 0.008 0.992 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 -9.485 -15.278 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.143 4.143 3 H 0.148 0.852 4 C -0.175 4.175 5 C 0.316 3.684 6 O -0.395 6.395 7 N -0.318 5.318 8 C -0.018 4.018 9 C -0.045 4.045 10 O -0.317 6.317 11 C 0.105 3.895 12 C -0.584 4.584 13 H 0.043 0.957 14 C -0.184 4.184 15 N -0.579 5.579 16 Si 0.778 3.222 17 H -0.183 1.183 18 H -0.195 1.195 19 H -0.171 1.171 20 C 0.307 3.693 21 O -0.381 6.381 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.128 0.872 25 H 0.160 0.840 26 H 0.174 0.826 27 H 0.149 0.851 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.032 0.968 32 H 0.026 0.974 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.574 -9.576 -14.796 20.057 hybrid contribution 1.107 -0.006 0.647 1.282 sum -8.467 -9.582 -14.149 19.071 Atomic orbital electron populations 1.21716 0.89031 1.03367 1.04676 1.22184 1.00582 1.01325 0.90174 0.85224 1.22711 1.02507 0.94323 0.97979 1.21542 0.79142 0.86529 0.81191 1.90733 1.43354 1.38633 1.66797 1.46908 1.46961 1.28152 1.09823 1.21874 0.92170 0.92976 0.94825 1.23002 0.97516 0.87989 0.95978 1.87988 1.30637 1.38240 1.74882 1.20322 0.82634 0.92744 0.93830 1.21098 0.93983 1.06731 1.36581 0.95712 1.25856 1.04339 0.94491 0.93693 1.70036 1.32992 1.16430 1.38467 0.85591 0.77317 0.80155 0.79151 1.18250 1.19489 1.17060 1.21658 0.76314 0.80171 0.91162 1.90790 1.57171 1.68454 1.21683 0.91691 0.92502 0.87247 0.84010 0.82560 0.85101 0.88988 0.93528 0.90441 0.96827 0.97433 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.09 71.99 0.65 -1.14 16 2 C -0.12 -2.33 3.70 -10.93 -0.04 -2.37 16 3 H 0.13 2.43 8.14 -2.39 -0.02 2.42 16 4 C -0.14 -1.94 6.67 30.46 0.20 -1.74 16 5 C 0.52 12.85 8.08 87.99 0.71 13.56 16 6 O -0.52 -15.26 17.48 -2.89 -0.05 -15.31 16 7 N -0.58 -16.84 2.53 -756.66 -1.91 -18.75 16 8 C 0.10 3.04 5.97 86.38 0.52 3.55 16 9 C 0.03 1.16 6.28 71.98 0.45 1.61 16 10 O -0.40 -19.46 9.69 -148.98 -1.44 -20.90 16 11 C 0.18 9.44 4.76 71.24 0.34 9.78 16 12 C -0.55 -34.62 9.99 25.60 0.26 -34.37 16 13 H 0.02 1.79 8.06 -2.91 -0.02 1.77 16 14 C 0.01 0.87 5.47 84.65 0.46 1.34 16 15 N -0.94 -60.38 13.96 21.45 0.30 -60.08 16 16 Si 0.96 44.23 27.47 68.60 1.88 46.11 16 17 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 20 C 0.52 16.38 7.03 87.99 0.62 17.00 16 21 O -0.51 -21.71 17.24 -2.87 -0.05 -21.76 16 22 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.16 1.11 7.75 -2.39 -0.02 1.09 16 27 H 0.13 3.01 7.83 -2.38 -0.02 2.99 16 28 H 0.09 2.85 7.82 -2.39 -0.02 2.83 16 29 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.01 0.70 7.20 -2.39 -0.02 0.68 16 32 H 0.01 0.39 7.57 -2.39 -0.02 0.38 16 33 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -83.64 287.66 3.94 -79.70 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.04 Total: 3.76 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 4.17 Total: 7.23 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -1.61 Total: -78.83 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: -1.54 Total: -57.97 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.11 kcal Total: -83.64 3.94 -79.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385252224.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.080 kcal (2) G-P(sol) polarization free energy of solvation -83.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds