Wall clock time and date at job start Mon Mar 30 2020 04:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 110.54199 * 2 1 4 4 C 1.54229 * 110.60362 * 122.84366 * 2 1 3 5 5 C 1.51312 * 103.69250 * 118.59736 * 4 2 1 6 6 O 1.21222 * 125.39990 * 180.02562 * 5 4 2 7 7 N 1.34227 * 109.01858 * 0.13197 * 5 4 2 8 8 C 1.46504 * 122.71133 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46864 * 269.89539 * 8 7 5 10 10 O 1.42903 * 109.47054 * 65.00521 * 9 8 7 11 11 C 1.42900 * 114.00064 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47182 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00203 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00366 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99479 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00324 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46998 * 90.00037 * 16 14 12 18 18 H 1.48500 * 109.47112 * 209.99774 * 16 14 12 19 19 H 1.48495 * 109.47175 * 329.99953 * 16 14 12 20 20 C 1.33877 * 114.52459 * 359.85468 * 7 5 4 21 21 O 1.21225 * 125.39453 * 180.02562 * 20 7 5 22 22 H 1.08995 * 109.46874 * 297.15565 * 1 2 3 23 23 H 1.09002 * 109.46742 * 57.15286 * 1 2 3 24 24 H 1.08997 * 109.46604 * 177.15340 * 1 2 3 25 25 H 1.09002 * 110.60676 * 237.19144 * 4 2 1 26 26 H 1.09002 * 110.60629 * 359.97438 * 4 2 1 27 27 H 1.08993 * 109.47162 * 29.89504 * 8 7 5 28 28 H 1.09003 * 109.46895 * 149.89881 * 8 7 5 29 29 H 1.08997 * 109.47045 * 184.99691 * 9 8 7 30 30 H 1.08996 * 109.47462 * 305.00183 * 9 8 7 31 31 H 1.08998 * 109.47178 * 299.99874 * 11 10 9 32 32 H 1.09000 * 109.46833 * 59.99751 * 11 10 9 33 33 H 0.97006 * 119.99784 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0728 -0.7830 1.2129 5 6 2.8575 -1.9149 0.5865 6 8 3.4544 -2.7767 1.1952 7 7 2.7875 -1.8087 -0.7498 8 6 3.4450 -2.7548 -1.6547 9 6 4.8588 -2.2616 -1.9687 10 8 5.6435 -2.2733 -0.7744 11 6 6.9890 -1.8284 -0.9586 12 6 7.7202 -1.8810 0.3580 13 1 7.2085 -2.2199 1.2467 14 6 9.0421 -1.4956 0.4284 15 7 9.6650 -1.0825 -0.6537 16 14 9.9482 -1.5602 2.0606 17 1 10.5861 -2.8918 2.2203 18 1 10.9923 -0.5046 2.0893 19 1 8.9868 -1.3358 3.1698 20 6 2.0659 -0.7695 -1.1876 21 8 1.8734 -0.4888 -2.3510 22 1 -0.3633 0.4690 0.9144 23 1 -0.3633 0.5574 -0.8634 24 1 -0.3632 -1.0264 -0.0510 25 1 2.7253 -0.1517 1.8162 26 1 1.2528 -1.1720 1.8165 27 1 3.4990 -3.7343 -1.1797 28 1 2.8728 -2.8305 -2.5794 29 1 5.3160 -2.9169 -2.7101 30 1 4.8105 -1.2461 -2.3618 31 1 7.4900 -2.4750 -1.6790 32 1 6.9851 -0.8040 -1.3310 33 1 10.5950 -0.8110 -0.6041 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385252225.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:57 Heat of formation + Delta-G solvation = -119.260548 kcal Electronic energy + Delta-G solvation = -17558.946512 eV Core-core repulsion = 14585.001971 eV Total energy + Delta-G solvation = -2973.944540 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.74418 -38.34535 -36.88301 -35.72307 -34.46473 -32.68023 -30.10370 -27.95747 -26.81605 -24.77306 -22.83158 -22.20451 -21.62629 -19.28588 -17.29803 -16.73709 -16.34585 -16.04351 -15.42750 -15.18242 -14.57413 -14.32596 -14.15391 -14.03093 -13.69502 -13.42374 -12.87852 -12.61530 -12.27385 -12.13103 -11.79224 -11.41369 -11.36011 -10.90498 -10.85225 -10.74319 -10.27024 -10.12531 -9.78623 -9.41832 -9.10446 -8.85160 -8.19584 -6.10163 -4.11561 1.70091 2.66101 2.92560 3.31352 3.36004 3.42169 4.02794 4.24641 4.34288 4.37101 4.65715 4.79069 5.06231 5.26259 5.29010 5.32592 5.36989 5.41913 5.56152 5.59796 5.65390 5.82859 5.85307 6.03663 6.18499 7.02269 7.07265 7.40493 7.49514 7.81022 8.00090 8.14664 8.54749 9.02193 9.53219 11.01450 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.031703 B = 0.005956 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.993828 B = 4699.893632 C = 5051.802401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 H 0.123 0.877 4 C -0.155 4.155 5 C 0.527 3.473 6 O -0.454 6.454 7 N -0.567 5.567 8 C 0.104 3.896 9 C 0.045 3.955 10 O -0.386 6.386 11 C 0.196 3.804 12 C -0.512 4.512 13 H 0.067 0.933 14 C 0.056 3.944 15 N -0.900 5.900 16 Si 0.908 3.092 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.531 3.469 21 O -0.491 6.491 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.005 0.995 32 H 0.003 0.997 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.148 1.750 0.993 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 H 0.141 0.859 4 C -0.195 4.195 5 C 0.315 3.685 6 O -0.322 6.322 7 N -0.310 5.310 8 C -0.017 4.017 9 C -0.034 4.034 10 O -0.306 6.306 11 C 0.121 3.879 12 C -0.550 4.550 13 H 0.085 0.915 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.735 3.265 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.196 1.196 20 C 0.320 3.680 21 O -0.364 6.364 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.139 0.861 26 H 0.135 0.865 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.023 0.977 32 H 0.021 0.979 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.786 1.393 0.817 17.859 hybrid contribution 0.936 0.128 0.330 1.001 sum -16.849 1.521 1.147 16.957 Atomic orbital electron populations 1.21670 0.91134 1.02914 1.03450 1.22053 0.98865 1.01600 0.92434 0.85917 1.22602 1.01774 0.96641 0.98492 1.20703 0.79838 0.86408 0.81583 1.90817 1.39086 1.36637 1.65640 1.46738 1.46829 1.27673 1.09733 1.21872 0.92760 0.93097 0.93965 1.22590 0.90780 0.99649 0.90382 1.87955 1.25796 1.87754 1.29071 1.20206 0.76498 0.93323 0.97831 1.21055 0.95507 1.43817 0.94652 0.91461 1.24950 0.97123 0.95110 0.97327 1.69971 1.11556 1.44386 1.27999 0.86331 0.79181 0.77795 0.83176 1.20411 1.21096 1.19599 1.20736 0.76723 0.80172 0.90412 1.90729 1.57783 1.68652 1.19246 0.90725 0.91108 0.92109 0.86131 0.86529 0.88318 0.88343 0.92688 0.94048 0.97676 0.97933 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 9.10 37.16 0.34 -0.59 16 2 C -0.13 -1.22 3.68 -90.82 -0.33 -1.56 16 3 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.16 -1.55 6.66 -26.94 -0.18 -1.73 16 5 C 0.53 8.22 7.72 -10.93 -0.08 8.14 16 6 O -0.45 -9.04 17.26 5.61 0.10 -8.94 16 7 N -0.57 -8.67 2.53 -115.25 -0.29 -8.96 16 8 C 0.10 1.63 5.97 -4.04 -0.02 1.60 16 9 C 0.04 0.86 6.28 37.16 0.23 1.09 16 10 O -0.39 -9.61 9.68 -35.23 -0.34 -9.95 16 11 C 0.20 5.53 5.69 36.00 0.20 5.73 16 12 C -0.51 -15.52 9.43 -34.44 -0.32 -15.84 16 13 H 0.07 2.06 7.81 -52.48 -0.41 1.65 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 16 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.53 7.35 7.42 -11.09 -0.08 7.27 16 21 O -0.49 -8.00 17.48 5.61 0.10 -7.90 16 22 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.12 0.85 7.74 -51.93 -0.40 0.44 16 27 H 0.10 1.54 7.84 -51.93 -0.41 1.13 16 28 H 0.10 1.28 7.83 -51.93 -0.41 0.88 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 33 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 291.31 15.07 4.39 4.39 Total: -1.00 -35.78 291.31 -5.25 -41.03 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: -4.56 Total: -5.96 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -0.35 Total: 5.65 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.44 Total: -35.62 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.15 Total: -26.79 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.78 -5.25 -41.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385252225.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.228 kcal (2) G-P(sol) polarization free energy of solvation -35.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds