Wall clock time and date at job start Mon Mar 30 2020 04:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 110.54199 * 2 1 4 4 C 1.54229 * 110.60362 * 122.84366 * 2 1 3 5 5 C 1.51312 * 103.69250 * 118.59736 * 4 2 1 6 6 O 1.21222 * 125.39990 * 180.02562 * 5 4 2 7 7 N 1.34227 * 109.01858 * 0.13197 * 5 4 2 8 8 C 1.46504 * 122.71133 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.46864 * 269.89539 * 8 7 5 10 10 O 1.42903 * 109.47054 * 65.00521 * 9 8 7 11 11 C 1.42900 * 114.00064 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47182 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00203 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00366 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99479 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00324 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46998 * 90.00037 * 16 14 12 18 18 H 1.48500 * 109.47112 * 209.99774 * 16 14 12 19 19 H 1.48495 * 109.47175 * 329.99953 * 16 14 12 20 20 C 1.33877 * 114.52459 * 359.85468 * 7 5 4 21 21 O 1.21225 * 125.39453 * 180.02562 * 20 7 5 22 22 H 1.08995 * 109.46874 * 297.15565 * 1 2 3 23 23 H 1.09002 * 109.46742 * 57.15286 * 1 2 3 24 24 H 1.08997 * 109.46604 * 177.15340 * 1 2 3 25 25 H 1.09002 * 110.60676 * 237.19144 * 4 2 1 26 26 H 1.09002 * 110.60629 * 359.97438 * 4 2 1 27 27 H 1.08993 * 109.47162 * 29.89504 * 8 7 5 28 28 H 1.09003 * 109.46895 * 149.89881 * 8 7 5 29 29 H 1.08997 * 109.47045 * 184.99691 * 9 8 7 30 30 H 1.08996 * 109.47462 * 305.00183 * 9 8 7 31 31 H 1.08998 * 109.47178 * 299.99874 * 11 10 9 32 32 H 1.09000 * 109.46833 * 59.99751 * 11 10 9 33 33 H 0.97006 * 119.99784 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0728 -0.7830 1.2129 5 6 2.8575 -1.9149 0.5865 6 8 3.4544 -2.7767 1.1952 7 7 2.7875 -1.8087 -0.7498 8 6 3.4450 -2.7548 -1.6547 9 6 4.8588 -2.2616 -1.9687 10 8 5.6435 -2.2733 -0.7744 11 6 6.9890 -1.8284 -0.9586 12 6 7.7202 -1.8810 0.3580 13 1 7.2085 -2.2199 1.2467 14 6 9.0421 -1.4956 0.4284 15 7 9.6650 -1.0825 -0.6537 16 14 9.9482 -1.5602 2.0606 17 1 10.5861 -2.8918 2.2203 18 1 10.9923 -0.5046 2.0893 19 1 8.9868 -1.3358 3.1698 20 6 2.0659 -0.7695 -1.1876 21 8 1.8734 -0.4888 -2.3510 22 1 -0.3633 0.4690 0.9144 23 1 -0.3633 0.5574 -0.8634 24 1 -0.3632 -1.0264 -0.0510 25 1 2.7253 -0.1517 1.8162 26 1 1.2528 -1.1720 1.8165 27 1 3.4990 -3.7343 -1.1797 28 1 2.8728 -2.8305 -2.5794 29 1 5.3160 -2.9169 -2.7101 30 1 4.8105 -1.2461 -2.3618 31 1 7.4900 -2.4750 -1.6790 32 1 6.9851 -0.8040 -1.3310 33 1 10.5950 -0.8110 -0.6041 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385252225.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:57 Heat of formation + Delta-G solvation = -145.052161 kcal Electronic energy + Delta-G solvation = -17560.064920 eV Core-core repulsion = 14585.001971 eV Total energy + Delta-G solvation = -2975.062948 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.86919 -39.59130 -38.74576 -36.92822 -35.66086 -34.83578 -31.45697 -29.37260 -28.48978 -25.80800 -24.68695 -23.98096 -22.59931 -20.43793 -18.74218 -18.49425 -17.79068 -17.45886 -17.11120 -16.65817 -16.34977 -15.75123 -15.45464 -15.25096 -15.01747 -14.72510 -14.03338 -13.91551 -13.64108 -13.33495 -13.22076 -12.84986 -12.80645 -12.61411 -12.43787 -12.12862 -12.08788 -11.41015 -11.34265 -10.96272 -10.93467 -10.77413 -10.34376 -8.36777 -6.49684 0.56137 1.36637 1.39831 1.52156 1.53481 1.80135 2.31346 2.96737 3.01634 3.16852 3.29001 3.54001 3.92608 3.95518 4.03927 4.24355 4.32773 4.40859 4.51194 4.69535 4.71631 4.75429 4.78433 5.00202 5.03463 5.08149 5.32794 5.49342 5.87249 5.89743 6.37748 6.43828 6.73557 6.82007 7.22192 8.75622 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.031703 B = 0.005956 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.993828 B = 4699.893632 C = 5051.802401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.116 4.116 3 H 0.141 0.859 4 C -0.141 4.141 5 C 0.516 3.484 6 O -0.509 6.509 7 N -0.577 5.577 8 C 0.107 3.893 9 C 0.037 3.963 10 O -0.398 6.398 11 C 0.211 3.789 12 C -0.547 4.547 13 H 0.056 0.944 14 C 0.008 3.992 15 N -0.930 5.930 16 Si 0.984 3.016 17 H -0.267 1.267 18 H -0.270 1.270 19 H -0.265 1.265 20 C 0.525 3.475 21 O -0.519 6.519 22 H 0.105 0.895 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.133 0.867 26 H 0.153 0.847 27 H 0.096 0.904 28 H 0.127 0.873 29 H 0.067 0.933 30 H 0.035 0.965 31 H -0.013 1.013 32 H -0.017 1.017 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.209 2.615 2.509 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.137 4.137 3 H 0.158 0.842 4 C -0.180 4.180 5 C 0.307 3.693 6 O -0.381 6.381 7 N -0.319 5.319 8 C -0.015 4.015 9 C -0.041 4.041 10 O -0.318 6.318 11 C 0.136 3.864 12 C -0.585 4.585 13 H 0.074 0.926 14 C -0.190 4.190 15 N -0.569 5.569 16 Si 0.806 3.194 17 H -0.192 1.192 18 H -0.195 1.195 19 H -0.190 1.190 20 C 0.316 3.684 21 O -0.394 6.394 22 H 0.124 0.876 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.151 0.849 26 H 0.170 0.830 27 H 0.115 0.885 28 H 0.145 0.855 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.005 0.995 32 H 0.000 1.000 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.884 2.276 2.310 19.161 hybrid contribution 1.221 -0.144 -0.264 1.257 sum -17.664 2.133 2.046 17.909 Atomic orbital electron populations 1.21717 0.88652 1.03375 1.04958 1.22175 1.00627 1.01398 0.89453 0.84156 1.22722 1.02134 0.94411 0.98727 1.21745 0.79161 0.86833 0.81598 1.90784 1.41688 1.39079 1.66538 1.47005 1.46877 1.28083 1.09977 1.21823 0.90882 0.93144 0.95618 1.22889 0.92265 0.99895 0.89015 1.87925 1.24494 1.87501 1.31909 1.19822 0.78165 0.91708 0.96743 1.21306 0.96731 1.45523 0.94929 0.92562 1.25961 0.97596 0.93758 1.01702 1.70070 1.12265 1.44161 1.30386 0.85181 0.77842 0.78581 0.77804 1.19243 1.19481 1.18973 1.21580 0.75836 0.79728 0.91282 1.90712 1.58695 1.69198 1.20792 0.87626 0.91370 0.92041 0.84912 0.82962 0.88526 0.85538 0.91451 0.94640 0.99491 0.99977 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.10 71.98 0.66 -0.68 16 2 C -0.12 -1.87 3.68 -10.93 -0.04 -1.91 16 3 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.14 -2.44 6.66 30.46 0.20 -2.23 16 5 C 0.52 15.85 7.72 87.94 0.68 16.53 16 6 O -0.51 -20.67 17.26 -2.85 -0.05 -20.72 16 7 N -0.58 -17.45 2.53 -756.18 -1.92 -19.37 16 8 C 0.11 3.36 5.97 86.38 0.52 3.88 16 9 C 0.04 1.47 6.28 71.98 0.45 1.93 16 10 O -0.40 -20.54 9.68 -148.98 -1.44 -21.98 16 11 C 0.21 12.37 5.69 71.23 0.41 12.78 16 12 C -0.55 -33.96 9.43 25.60 0.24 -33.71 16 13 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 14 C 0.01 0.50 5.46 84.65 0.46 0.96 16 15 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 16 Si 0.98 45.49 29.54 68.60 2.03 47.52 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 20 C 0.52 13.92 7.42 87.99 0.65 14.57 16 21 O -0.52 -16.54 17.48 -2.86 -0.05 -16.58 16 22 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 23 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.15 1.59 7.74 -2.39 -0.02 1.57 16 27 H 0.10 3.08 7.84 -2.39 -0.02 3.06 16 28 H 0.13 3.23 7.83 -2.39 -0.02 3.21 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 33 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -79.67 291.31 4.18 -75.49 By element: Atomic # 1 Polarization: -0.85 SS G_CDS: 1.10 Total: 0.25 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 4.23 Total: 12.11 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -1.63 Total: -76.07 kcal Atomic # 8 Polarization: -57.75 SS G_CDS: -1.54 Total: -59.29 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -79.67 4.18 -75.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385252225.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.562 kcal (2) G-P(sol) polarization free energy of solvation -79.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds