Wall clock time and date at job start Mon Mar 30 2020 03:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47451 * 2 1 4 4 N 1.46501 * 109.47221 * 120.00325 * 2 1 3 5 5 C 1.36933 * 119.99973 * 301.60196 * 4 2 1 6 6 H 1.08000 * 119.99760 * 321.78095 * 5 4 2 7 7 C 1.38813 * 120.00263 * 141.78306 * 5 4 2 8 8 N 1.31618 * 120.00066 * 338.62854 * 7 5 4 9 9 Si 1.86798 * 120.00050 * 158.63159 * 7 5 4 10 10 H 1.48497 * 109.47424 * 59.99828 * 9 7 5 11 11 H 1.48504 * 109.47088 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46909 * 299.99528 * 9 7 5 13 13 C 1.46499 * 120.00177 * 121.59533 * 4 2 1 14 14 C 1.50700 * 109.47089 * 89.99825 * 13 4 2 15 15 C 1.31060 * 125.01364 * 89.99847 * 14 13 4 16 16 N 1.36580 * 115.98420 * 179.97438 * 15 14 13 17 17 H 0.96997 * 122.73896 * 180.02562 * 16 15 14 18 18 C 1.35704 * 114.52774 * 0.02562 * 16 15 14 19 19 N 1.31021 * 125.59943 * 179.73972 * 18 16 15 20 20 S 1.75906 * 125.01834 * 269.98082 * 14 13 4 21 21 H 1.09003 * 109.46435 * 305.36981 * 1 2 3 22 22 H 1.08997 * 109.46729 * 65.37235 * 1 2 3 23 23 H 1.08997 * 109.47213 * 185.37535 * 1 2 3 24 24 H 1.09004 * 109.46515 * 240.00063 * 2 1 3 25 25 H 1.08996 * 109.47360 * 179.80672 * 3 2 1 26 26 H 1.08999 * 109.47093 * 299.81097 * 3 2 1 27 27 H 1.09003 * 109.46894 * 59.80685 * 3 2 1 28 28 H 0.96996 * 120.00195 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.47427 * 330.00511 * 13 4 2 30 30 H 1.08997 * 109.47465 * 209.99963 * 13 4 2 31 31 H 1.08001 * 122.00530 * 0.02562 * 15 14 13 32 32 H 0.96999 * 120.00338 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6608 -0.2424 2.4396 6 1 1.5907 0.8181 2.6317 7 6 1.3883 -1.1509 3.4531 8 7 1.0592 -2.3899 3.1553 9 14 1.4885 -0.6148 5.2397 10 1 0.5258 0.4900 5.4799 11 1 1.1550 -1.7630 6.1205 12 1 2.8653 -0.1456 5.5392 13 6 2.8893 -1.8611 1.0620 14 6 4.3289 -1.4160 1.0388 15 6 5.0920 -1.2831 2.0960 16 7 6.3718 -0.8674 1.8618 17 1 7.0193 -0.7371 2.5721 18 6 6.6636 -0.6516 0.5541 19 7 7.8189 -0.2467 0.0873 20 16 5.2332 -0.9986 -0.4112 21 1 -0.3632 0.5949 0.8380 22 1 -0.3633 0.4282 -0.9342 23 1 -0.3633 -1.0231 0.0963 24 1 1.8933 -0.5139 -0.8901 25 1 3.1301 1.4424 0.0035 26 1 1.6796 1.9553 -0.8917 27 1 1.6740 1.9573 0.8883 28 1 0.8691 -3.0249 3.8635 29 1 2.6556 -2.3834 0.1342 30 1 2.7298 -2.5314 1.9065 31 1 4.7308 -1.4906 3.0924 32 1 7.9386 -0.1187 -0.8668 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389333290.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:12 Heat of formation + Delta-G solvation = 62.114414 kcal Electronic energy + Delta-G solvation = -15664.576662 eV Core-core repulsion = 13173.542753 eV Total energy + Delta-G solvation = -2491.033910 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.13085 -36.60617 -33.65256 -32.44756 -31.00866 -28.62140 -26.17437 -25.54401 -23.68663 -22.97015 -19.73313 -18.90219 -18.18463 -16.63674 -16.22981 -15.13234 -14.83308 -14.49866 -14.01942 -13.64894 -13.09145 -13.05965 -12.58177 -11.97194 -11.58059 -11.35793 -11.34642 -10.98557 -10.74127 -10.63573 -10.29954 -10.23065 -10.01764 -9.89720 -9.65497 -9.10345 -8.97960 -8.57325 -6.87271 -6.65921 -5.90239 -3.45195 1.74664 2.14872 2.46674 2.88654 3.28185 3.35735 3.37598 3.40526 4.39447 5.21058 5.41595 5.49726 5.95641 5.95982 6.15330 6.18261 6.33663 6.43126 6.45169 6.67338 6.74570 6.79003 6.83328 7.17032 7.21642 7.31784 7.42724 7.57905 7.77138 8.28824 8.44163 9.09291 9.71008 10.31650 11.11170 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.010011 C = 0.007874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.364909 B = 2796.351085 C = 3555.199493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.165 3.835 3 C -0.154 4.154 4 N -0.568 5.568 5 C -0.249 4.249 6 H 0.060 0.940 7 C 0.014 3.986 8 N -0.885 5.885 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.283 1.283 13 C 0.216 3.784 14 C -0.183 4.183 15 C 0.064 3.936 16 N -0.622 5.622 17 H 0.417 0.583 18 C 0.395 3.605 19 N -0.760 5.760 20 S -0.052 6.052 21 H 0.054 0.946 22 H 0.030 0.970 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.257 0.743 29 H 0.040 0.960 30 H 0.113 0.887 31 H 0.178 0.822 32 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.898 1.191 -3.824 6.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.059 3.941 3 C -0.213 4.213 4 N -0.287 5.287 5 C -0.379 4.379 6 H 0.078 0.922 7 C -0.187 4.187 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.209 1.209 13 C 0.086 3.914 14 C -0.307 4.307 15 C -0.065 4.065 16 N -0.247 5.247 17 H 0.255 0.745 18 C 0.007 3.993 19 N -0.405 5.405 20 S 0.184 5.816 21 H 0.073 0.927 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.131 0.869 31 H 0.195 0.805 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.346 1.302 -4.620 7.185 hybrid contribution 0.045 0.311 1.917 1.942 sum 5.391 1.613 -2.703 6.243 Atomic orbital electron populations 1.22053 0.97629 1.01616 0.99097 1.20413 0.92434 0.91873 0.89424 1.22161 1.00571 0.98676 0.99910 1.43864 1.50770 1.32660 1.01412 1.18892 1.40965 0.91438 0.86588 0.92246 1.25156 0.98472 0.96457 0.98579 1.69966 1.46345 1.04519 1.31847 0.86563 0.78305 0.77765 0.85331 1.20698 1.21605 1.20945 1.19514 0.79320 0.90617 1.01926 1.24960 1.03129 1.11697 0.90933 1.20497 0.82499 1.02272 1.01209 1.41672 1.12796 1.64737 1.05501 0.74472 1.24093 0.93176 0.93608 0.88472 1.68999 1.17215 1.32870 1.21428 1.85501 1.05942 1.76995 1.13192 0.92703 0.95139 0.92927 0.93686 0.93512 0.94549 0.92896 0.93340 0.94206 0.86940 0.80508 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.05 37.16 0.34 -2.50 16 2 C 0.17 3.32 3.36 -67.93 -0.23 3.09 16 3 C -0.15 -2.87 9.18 37.16 0.34 -2.53 16 4 N -0.57 -12.74 2.34 -167.02 -0.39 -13.13 16 5 C -0.25 -6.11 8.25 -15.06 -0.12 -6.24 16 6 H 0.06 1.51 6.93 -52.49 -0.36 1.15 16 7 C 0.01 0.34 4.95 -17.43 -0.09 0.26 16 8 N -0.88 -23.01 11.52 55.49 0.64 -22.37 16 9 Si 0.89 19.87 29.60 -169.99 -5.03 14.84 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 C 0.22 4.57 5.73 -5.19 -0.03 4.54 16 14 C -0.18 -3.44 6.01 -36.04 -0.22 -3.66 16 15 C 0.06 1.11 11.14 -17.17 -0.19 0.92 16 16 N -0.62 -9.79 5.66 -13.88 -0.08 -9.87 16 17 H 0.42 5.55 8.96 -40.82 -0.37 5.18 16 18 C 0.40 6.66 8.75 -89.33 -0.78 5.88 16 19 N -0.76 -12.60 14.18 30.43 0.43 -12.16 16 20 S -0.05 -0.89 23.35 -107.50 -2.51 -3.40 16 21 H 0.05 1.14 7.81 -51.93 -0.41 0.73 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 24 H 0.04 0.88 7.78 -51.93 -0.40 0.47 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 1.04 7.06 -51.93 -0.37 0.67 16 28 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 29 H 0.04 0.83 7.91 -51.93 -0.41 0.42 16 30 H 0.11 2.64 5.56 -51.93 -0.29 2.35 16 31 H 0.18 2.99 8.06 -52.49 -0.42 2.57 16 32 H 0.35 5.24 8.92 -40.82 -0.36 4.87 16 LS Contribution 284.27 15.07 4.28 4.28 Total: -1.00 -26.16 284.27 -7.86 -34.02 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.22 Total: 8.04 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -0.98 Total: -0.24 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.60 Total: -57.54 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.51 Total: -3.40 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -26.16 -7.86 -34.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389333290.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.135 kcal (2) G-P(sol) polarization free energy of solvation -26.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds