Wall clock time and date at job start Mon Mar 30 2020 03:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47451 * 2 1 4 4 N 1.46501 * 109.47221 * 120.00325 * 2 1 3 5 5 C 1.36933 * 119.99973 * 301.60196 * 4 2 1 6 6 H 1.08000 * 119.99760 * 321.78095 * 5 4 2 7 7 C 1.38813 * 120.00263 * 141.78306 * 5 4 2 8 8 N 1.31618 * 120.00066 * 338.62854 * 7 5 4 9 9 Si 1.86798 * 120.00050 * 158.63159 * 7 5 4 10 10 H 1.48497 * 109.47424 * 59.99828 * 9 7 5 11 11 H 1.48504 * 109.47088 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46909 * 299.99528 * 9 7 5 13 13 C 1.46499 * 120.00177 * 121.59533 * 4 2 1 14 14 C 1.50700 * 109.47089 * 89.99825 * 13 4 2 15 15 C 1.31060 * 125.01364 * 89.99847 * 14 13 4 16 16 N 1.36580 * 115.98420 * 179.97438 * 15 14 13 17 17 H 0.96997 * 122.73896 * 180.02562 * 16 15 14 18 18 C 1.35704 * 114.52774 * 0.02562 * 16 15 14 19 19 N 1.31021 * 125.59943 * 179.73972 * 18 16 15 20 20 S 1.75906 * 125.01834 * 269.98082 * 14 13 4 21 21 H 1.09003 * 109.46435 * 305.36981 * 1 2 3 22 22 H 1.08997 * 109.46729 * 65.37235 * 1 2 3 23 23 H 1.08997 * 109.47213 * 185.37535 * 1 2 3 24 24 H 1.09004 * 109.46515 * 240.00063 * 2 1 3 25 25 H 1.08996 * 109.47360 * 179.80672 * 3 2 1 26 26 H 1.08999 * 109.47093 * 299.81097 * 3 2 1 27 27 H 1.09003 * 109.46894 * 59.80685 * 3 2 1 28 28 H 0.96996 * 120.00195 * 179.97438 * 8 7 5 29 29 H 1.09002 * 109.47427 * 330.00511 * 13 4 2 30 30 H 1.08997 * 109.47465 * 209.99963 * 13 4 2 31 31 H 1.08001 * 122.00530 * 0.02562 * 15 14 13 32 32 H 0.96999 * 120.00338 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6608 -0.2424 2.4396 6 1 1.5907 0.8181 2.6317 7 6 1.3883 -1.1509 3.4531 8 7 1.0592 -2.3899 3.1553 9 14 1.4885 -0.6148 5.2397 10 1 0.5258 0.4900 5.4799 11 1 1.1550 -1.7630 6.1205 12 1 2.8653 -0.1456 5.5392 13 6 2.8893 -1.8611 1.0620 14 6 4.3289 -1.4160 1.0388 15 6 5.0920 -1.2831 2.0960 16 7 6.3718 -0.8674 1.8618 17 1 7.0193 -0.7371 2.5721 18 6 6.6636 -0.6516 0.5541 19 7 7.8189 -0.2467 0.0873 20 16 5.2332 -0.9986 -0.4112 21 1 -0.3632 0.5949 0.8380 22 1 -0.3633 0.4282 -0.9342 23 1 -0.3633 -1.0231 0.0963 24 1 1.8933 -0.5139 -0.8901 25 1 3.1301 1.4424 0.0035 26 1 1.6796 1.9553 -0.8917 27 1 1.6740 1.9573 0.8883 28 1 0.8691 -3.0249 3.8635 29 1 2.6556 -2.3834 0.1342 30 1 2.7298 -2.5314 1.9065 31 1 4.7308 -1.4906 3.0924 32 1 7.9386 -0.1187 -0.8668 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389333290.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:12 Heat of formation + Delta-G solvation = 47.748749 kcal Electronic energy + Delta-G solvation = -15665.199604 eV Core-core repulsion = 13173.542753 eV Total energy + Delta-G solvation = -2491.656852 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.49859 -38.26729 -35.04909 -34.19663 -32.59640 -30.23193 -27.72595 -27.25858 -25.09248 -24.61358 -21.38437 -20.41257 -19.55154 -18.07046 -17.90169 -16.80971 -16.30788 -16.10941 -15.52752 -15.30685 -14.68869 -14.45612 -14.22204 -13.51330 -13.20852 -13.11418 -12.92494 -12.65025 -12.37587 -12.33891 -11.94943 -11.78429 -11.61951 -11.49673 -11.25309 -10.47427 -10.42037 -10.36081 -8.48024 -8.22410 -7.76506 -5.34971 0.41160 0.75798 1.05330 1.48008 1.52329 1.55004 1.59386 2.08523 2.57130 3.32464 3.77701 4.14792 4.36610 4.55808 4.63950 4.69529 4.79240 4.89006 4.98635 5.12659 5.20690 5.21957 5.24150 5.61063 5.62791 5.73265 5.81699 5.85666 6.33996 6.57141 7.01324 7.25235 7.92276 8.48826 9.21457 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022018 B = 0.010011 C = 0.007874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.364909 B = 2796.351085 C = 3555.199493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.158 3.842 3 C -0.141 4.141 4 N -0.580 5.580 5 C -0.246 4.246 6 H 0.050 0.950 7 C -0.023 4.023 8 N -0.911 5.911 9 Si 0.941 3.059 10 H -0.286 1.286 11 H -0.296 1.296 12 H -0.274 1.274 13 C 0.224 3.776 14 C -0.210 4.210 15 C 0.082 3.918 16 N -0.612 5.612 17 H 0.430 0.570 18 C 0.388 3.612 19 N -0.759 5.759 20 S -0.034 6.034 21 H 0.037 0.963 22 H 0.062 0.938 23 H 0.029 0.971 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.252 0.748 29 H 0.036 0.964 30 H 0.088 0.912 31 H 0.181 0.819 32 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.941 2.067 -4.265 7.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.052 3.948 3 C -0.200 4.200 4 N -0.300 5.300 5 C -0.377 4.377 6 H 0.067 0.933 7 C -0.221 4.221 8 N -0.555 5.555 9 Si 0.770 3.230 10 H -0.212 1.212 11 H -0.222 1.222 12 H -0.200 1.200 13 C 0.095 3.905 14 C -0.334 4.334 15 C -0.048 4.048 16 N -0.239 5.239 17 H 0.271 0.729 18 C -0.001 4.001 19 N -0.405 5.405 20 S 0.202 5.798 21 H 0.056 0.944 22 H 0.081 0.919 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.106 0.894 31 H 0.198 0.802 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.430 2.198 -5.074 8.480 hybrid contribution -0.223 0.051 1.977 1.991 sum 6.207 2.249 -3.096 7.292 Atomic orbital electron populations 1.21951 0.97359 1.00063 1.00065 1.20583 0.92675 0.92694 0.88876 1.22012 0.99967 0.97539 1.00521 1.44024 1.51643 1.32849 1.01477 1.18919 1.40193 0.90947 0.87629 0.93284 1.25614 0.98845 0.96516 1.01077 1.70076 1.47889 1.05250 1.32248 0.85772 0.78342 0.76799 0.82047 1.21247 1.22239 1.20028 1.19201 0.80739 0.89895 1.00640 1.24535 1.02603 1.13665 0.92564 1.20520 0.82797 1.00494 1.01015 1.41590 1.12452 1.64128 1.05714 0.72931 1.24184 0.93186 0.93910 0.88790 1.68990 1.16898 1.32308 1.22258 1.85342 1.05526 1.76896 1.12085 0.94411 0.91900 0.95171 0.92951 0.94192 0.91811 0.94335 0.93845 0.94550 0.89404 0.80185 0.82128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 9.05 71.98 0.65 -4.54 16 2 C 0.16 6.18 3.36 44.99 0.15 6.33 16 3 C -0.14 -5.01 9.18 71.98 0.66 -4.35 16 4 N -0.58 -25.92 2.34 -682.34 -1.60 -27.52 16 5 C -0.25 -12.10 8.25 84.03 0.69 -11.41 16 6 H 0.05 2.50 6.93 -2.91 -0.02 2.48 16 7 C -0.02 -1.13 4.95 84.86 0.42 -0.71 16 8 N -0.91 -48.06 11.52 21.65 0.25 -47.81 16 9 Si 0.94 40.83 29.60 68.60 2.03 42.86 16 10 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.30 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 C 0.22 9.52 5.73 85.63 0.49 10.01 16 14 C -0.21 -7.68 6.01 25.59 0.15 -7.53 16 15 C 0.08 2.71 11.14 83.85 0.93 3.65 16 16 N -0.61 -17.95 5.66 -197.82 -1.12 -19.07 16 17 H 0.43 10.36 8.96 -92.71 -0.83 9.53 16 18 C 0.39 12.21 8.75 179.90 1.57 13.78 16 19 N -0.76 -23.23 14.18 -57.62 -0.82 -24.04 16 20 S -0.03 -1.12 23.35 -56.49 -1.32 -2.44 16 21 H 0.04 1.54 7.81 -2.39 -0.02 1.52 16 22 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.05 1.96 7.78 -2.39 -0.02 1.95 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.45 7.06 -2.39 -0.02 1.44 16 28 H 0.25 13.04 8.31 -92.71 -0.77 12.27 16 29 H 0.04 1.52 7.91 -2.39 -0.02 1.50 16 30 H 0.09 4.20 5.56 -2.39 -0.01 4.19 16 31 H 0.18 5.88 8.06 -2.91 -0.02 5.86 16 32 H 0.36 9.83 8.92 -92.71 -0.83 9.00 16 Total: -1.00 -54.10 284.27 2.64 -51.47 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -0.52 Total: 21.32 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 5.73 Total: 5.23 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -3.29 Total: -118.44 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -1.32 Total: -2.44 kcal Total: -54.10 2.64 -51.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389333290.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.214 kcal (2) G-P(sol) polarization free energy of solvation -54.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds