Wall clock time and date at job start Mon Mar 30 2020 03:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30917 * 1 3 3 Si 1.86797 * 120.00151 * 2 1 4 4 H 1.48502 * 109.47279 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46964 * 299.99680 * 3 2 1 6 6 H 1.48493 * 109.47482 * 59.99599 * 3 2 1 7 7 C 1.39838 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99827 * 163.12951 * 7 2 1 9 9 C 1.41230 * 119.99960 * 343.11782 * 7 2 1 10 10 C 1.40865 * 120.50982 * 155.66283 * 9 7 2 11 11 N 1.31414 * 120.75814 * 180.02562 * 10 9 7 12 12 C 1.32659 * 122.00377 * 0.02562 * 11 10 9 13 13 N 1.38134 * 119.52327 * 180.27543 * 12 11 10 14 14 C 1.40758 * 120.95159 * 0.02562 * 12 11 10 15 15 C 1.48298 * 120.44213 * 179.97438 * 14 12 11 16 16 C 1.39806 * 120.53845 * 309.99998 * 15 14 12 17 17 C 1.38398 * 118.31212 * 179.97438 * 16 15 14 18 18 C 1.38322 * 119.28783 * 359.97438 * 17 16 15 19 19 N 1.31895 * 121.03807 * 0.02675 * 18 17 16 20 20 C 1.31747 * 121.85381 * 359.67508 * 19 18 17 21 21 C 1.38737 * 119.12003 * 359.97438 * 14 12 11 22 22 H 0.97007 * 119.99509 * 0.02562 * 1 2 3 23 23 H 1.07999 * 119.62360 * 0.04828 * 10 9 7 24 24 H 0.97003 * 119.99527 * 179.72711 * 13 12 11 25 25 H 0.96993 * 120.00036 * 359.72824 * 13 12 11 26 26 H 1.08004 * 120.84878 * 359.95442 * 16 15 14 27 27 H 1.08000 * 120.36053 * 180.02562 * 17 16 15 28 28 H 1.08004 * 119.48735 * 180.02562 * 18 17 16 29 29 H 1.07999 * 119.70306 * 180.28898 * 20 19 18 30 30 H 1.07998 * 120.90175 * 179.97438 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.7032 1.3463 -0.0006 5 1 1.8845 2.3964 -1.2126 6 1 1.8845 2.3965 1.2124 7 6 2.0083 -1.2111 0.0005 8 1 3.0535 -1.2313 -0.2709 9 6 1.3477 -2.4076 0.3563 10 6 1.8244 -3.6513 -0.1025 11 7 1.2132 -4.7676 0.2251 12 6 0.1316 -4.7777 0.9932 13 7 -0.4667 -5.9816 1.3104 14 6 -0.4120 -3.5797 1.4938 15 6 -1.6219 -3.6042 2.3510 16 6 -2.7584 -4.3158 1.9556 17 6 -3.8616 -4.3078 2.7912 18 6 -3.8049 -3.6030 3.9800 19 7 -2.7183 -2.9406 4.3267 20 6 -1.6421 -2.9238 3.5670 21 6 0.1991 -2.3758 1.1747 22 1 -0.4850 0.8401 -0.0004 23 1 2.7024 -3.6878 -0.7303 24 1 -1.2555 -5.9973 1.8747 25 1 -0.0981 -6.8112 0.9689 26 1 -2.7753 -4.8578 1.0216 27 1 -4.7569 -4.8467 2.5185 28 1 -4.6638 -3.5949 4.6348 29 1 -0.7696 -2.3736 3.8870 30 1 -0.1939 -1.4396 1.5428 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390048718.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:06 Heat of formation + Delta-G solvation = 59.350839 kcal Electronic energy + Delta-G solvation = -16224.499421 eV Core-core repulsion = 13597.901723 eV Total energy + Delta-G solvation = -2626.597698 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.87940 -38.32776 -34.65974 -33.26562 -32.33807 -31.63382 -29.64006 -28.30390 -24.86581 -23.53633 -23.11617 -21.37468 -20.59399 -17.40922 -16.76799 -16.37078 -16.21083 -15.56838 -15.30057 -14.69911 -13.76665 -13.55857 -13.42414 -12.94854 -12.81876 -12.65332 -12.14597 -11.77493 -11.45590 -11.28304 -11.12336 -10.62086 -10.00373 -9.74678 -9.55186 -9.25846 -9.04354 -8.95821 -8.22364 -7.91371 -6.90581 -6.68219 -4.26806 1.36366 1.57674 2.64404 2.86002 3.08132 3.12871 3.22373 3.92976 4.17405 4.61813 4.66639 4.77528 5.13786 5.30357 5.35706 5.40951 5.60951 5.91055 6.03217 6.18865 6.37003 6.53893 6.61574 6.75817 7.02563 7.10567 7.18055 7.30443 7.71309 7.78443 8.29118 8.30513 8.36645 8.53442 8.76389 8.80260 9.60398 10.18183 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.023539 B = 0.008041 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.230990 B = 3481.273625 C = 4417.039222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.025 3.975 10 C 0.028 3.972 11 N -0.524 5.524 12 C 0.304 3.696 13 N -0.874 5.874 14 C -0.157 4.157 15 C -0.041 4.041 16 C -0.088 4.088 17 C -0.170 4.170 18 C 0.072 3.928 19 N -0.484 5.484 20 C 0.101 3.899 21 C -0.070 4.070 22 H 0.280 0.720 23 H 0.131 0.869 24 H 0.391 0.609 25 H 0.387 0.613 26 H 0.133 0.867 27 H 0.129 0.871 28 H 0.148 0.852 29 H 0.155 0.845 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.271 -4.418 3.907 7.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.020 3.980 10 C -0.130 4.130 11 N -0.240 5.240 12 C 0.069 3.931 13 N -0.423 5.423 14 C -0.164 4.164 15 C -0.044 4.044 16 C -0.114 4.114 17 C -0.190 4.190 18 C -0.085 4.085 19 N -0.192 5.192 20 C -0.057 4.057 21 C -0.097 4.097 22 H 0.090 0.910 23 H 0.148 0.852 24 H 0.221 0.779 25 H 0.215 0.785 26 H 0.150 0.850 27 H 0.147 0.853 28 H 0.165 0.835 29 H 0.172 0.828 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.085 -4.479 4.351 8.053 hybrid contribution -0.269 0.876 -0.583 1.086 sum -5.355 -3.603 3.768 7.473 Atomic orbital electron populations 1.69811 1.07465 1.29099 1.36798 1.25850 0.94737 1.01265 0.92452 0.86266 0.80944 0.81052 0.78515 1.18400 1.20105 1.19794 1.19329 0.97741 0.90676 1.40940 0.90172 1.18295 0.93331 0.93703 0.92656 1.22342 1.01060 0.87251 1.02365 1.66559 1.09008 1.32521 1.15890 1.17699 0.92726 0.84996 0.97662 1.41726 1.34826 1.05248 1.60479 1.18698 0.97911 0.94021 1.05734 1.19863 0.94120 0.95703 0.94675 1.21717 0.92226 0.98155 0.99275 1.21999 0.99168 1.01661 0.96203 1.22608 0.96208 0.94493 0.95196 1.67591 1.00049 1.17664 1.33867 1.22960 0.95969 0.96488 0.90252 1.21662 0.96266 0.95319 0.96404 0.90956 0.85203 0.77946 0.78537 0.84951 0.85316 0.83488 0.82815 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.34 10.91 55.54 0.61 -19.73 16 2 C 0.07 1.78 5.18 -17.34 -0.09 1.69 16 3 Si 0.91 18.34 29.59 -169.99 -5.03 13.31 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.46 -11.57 9.06 -37.85 -0.34 -11.92 16 8 H 0.08 1.95 7.90 -52.48 -0.41 1.53 16 9 C 0.03 0.65 5.59 -106.69 -0.60 0.05 16 10 C 0.03 0.69 10.95 -16.74 -0.18 0.50 16 11 N -0.52 -12.35 10.35 -11.58 -0.12 -12.47 16 12 C 0.30 6.66 7.69 -155.02 -1.19 5.47 16 13 N -0.87 -15.22 8.63 31.33 0.27 -14.95 16 14 C -0.16 -3.48 5.52 -104.62 -0.58 -4.05 16 15 C -0.04 -0.78 5.07 -104.76 -0.53 -1.31 16 16 C -0.09 -1.42 7.87 -38.94 -0.31 -1.72 16 17 C -0.17 -2.32 10.10 -39.49 -0.40 -2.71 16 18 C 0.07 1.03 11.17 -17.49 -0.20 0.84 16 19 N -0.48 -8.38 10.35 -12.96 -0.13 -8.52 16 20 C 0.10 1.87 10.71 -17.18 -0.18 1.68 16 21 C -0.07 -1.73 8.29 -38.32 -0.32 -2.04 16 22 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 23 H 0.13 2.90 8.06 -52.49 -0.42 2.48 16 24 H 0.39 6.07 5.94 -40.82 -0.24 5.83 16 25 H 0.39 6.10 8.95 -40.82 -0.37 5.73 16 26 H 0.13 2.04 7.58 -52.48 -0.40 1.65 16 27 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 28 H 0.15 1.62 8.06 -52.48 -0.42 1.19 16 29 H 0.15 2.80 8.05 -52.49 -0.42 2.38 16 30 H 0.13 3.40 6.20 -52.49 -0.33 3.07 16 LS Contribution 265.45 15.07 4.00 4.00 Total: -1.00 -28.05 265.45 -7.89 -35.94 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -2.57 Total: 15.94 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -4.92 Total: -13.52 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.62 Total: -55.67 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.05 -7.89 -35.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390048718.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.294 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds