Wall clock time and date at job start Mon Mar 30 2020 03:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47500 * 2 1 4 4 N 1.29414 * 125.70010 * 90.02073 * 3 2 1 5 5 N 1.26396 * 116.47623 * 179.73746 * 4 3 2 6 6 C 1.29409 * 116.47502 * 359.97438 * 5 4 3 7 7 C 1.50707 * 125.69372 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46829 * 89.97637 * 7 6 5 9 9 C 1.46898 * 110.99841 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47304 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47189 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99978 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99852 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99937 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99748 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47125 * 90.00691 * 15 13 11 17 17 H 1.48506 * 109.46887 * 210.00365 * 15 13 11 18 18 H 1.48493 * 109.47416 * 330.00094 * 15 13 11 19 19 S 1.71215 * 108.61179 * 0.02562 * 6 5 4 20 20 H 1.08996 * 109.47439 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.46926 * 300.00592 * 1 2 3 22 22 H 1.09001 * 109.46910 * 60.00302 * 1 2 3 23 23 H 1.09007 * 109.47102 * 239.99217 * 2 1 3 24 24 H 1.08996 * 109.46894 * 120.00188 * 2 1 3 25 25 H 1.09000 * 109.47136 * 209.97649 * 7 6 5 26 26 H 1.09001 * 109.46989 * 329.97993 * 7 6 5 27 27 H 1.00902 * 111.00109 * 56.04970 * 8 7 6 28 28 H 1.08996 * 109.47206 * 299.99805 * 9 8 7 29 29 H 1.09003 * 109.47142 * 60.00228 * 9 8 7 30 30 H 1.09006 * 109.47151 * 300.00627 * 10 9 8 31 31 H 1.09003 * 109.46695 * 60.00125 * 10 9 8 32 32 H 0.97000 * 120.00042 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2846 2.1326 1.0509 5 7 2.7053 3.3071 0.8483 6 6 2.8378 3.6673 -0.3875 7 6 3.3211 5.0128 -0.8643 8 7 4.7821 4.9830 -1.0150 9 6 5.2899 6.2806 -1.4800 10 6 6.8115 6.2110 -1.6241 11 6 7.3325 7.5423 -2.1005 12 1 6.6469 8.3569 -2.2820 13 6 8.6844 7.7205 -2.3048 14 7 9.1391 8.8825 -2.7201 15 14 9.8702 6.3118 -1.9902 16 1 10.0391 5.5196 -3.2349 17 1 11.1855 6.8568 -1.5681 18 1 9.3287 5.4391 -0.9177 19 16 2.3723 2.3602 -1.3906 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5140 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.8614 5.2445 -1.8250 26 1 3.0464 5.7763 -0.1364 27 1 5.0665 4.2403 -1.6359 28 1 4.8438 6.5207 -2.4451 29 1 5.0288 7.0533 -0.7568 30 1 7.2573 5.9710 -0.6587 31 1 7.0729 5.4382 -2.3471 32 1 10.0901 9.0078 -2.8641 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000391916747.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:47 Heat of formation + Delta-G solvation = 49.222101 kcal Electronic energy + Delta-G solvation = -14247.758399 eV Core-core repulsion = 11756.165437 eV Total energy + Delta-G solvation = -2491.592962 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.38154 -36.57662 -34.79825 -33.09251 -31.42947 -29.60085 -27.39726 -25.16533 -23.63308 -22.94122 -20.64450 -19.70945 -19.39487 -16.82899 -16.20642 -15.75476 -15.12180 -14.84288 -14.44832 -14.14352 -13.82947 -13.44585 -12.97974 -12.84438 -12.63190 -12.37842 -11.99354 -11.64728 -11.43491 -11.05019 -10.56191 -10.29515 -10.12785 -10.08601 -9.90173 -9.82571 -9.64857 -9.26409 -8.56056 -8.16902 -6.06757 -4.05694 0.29332 0.74991 1.22028 2.46725 3.30771 3.38964 3.45206 3.74912 4.26416 4.44613 4.52354 4.60796 4.75712 4.90764 4.99703 5.27794 5.31169 5.38333 5.44912 5.54199 5.60715 5.74497 6.06824 6.12104 6.67266 6.96668 7.27531 7.44451 7.59012 7.79533 8.48180 8.49273 8.96713 9.55342 11.06421 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.052422 B = 0.004013 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.002990 B = 6975.649652 C = 7174.514270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.042 4.042 3 C -0.020 4.020 4 N -0.261 5.261 5 N -0.245 5.245 6 C 0.002 3.998 7 C 0.136 3.864 8 N -0.685 5.685 9 C 0.074 3.926 10 C -0.010 4.010 11 C -0.523 4.523 12 H 0.072 0.928 13 C 0.068 3.932 14 N -0.903 5.903 15 Si 0.880 3.120 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.263 1.263 19 S 0.157 5.843 20 H 0.070 0.930 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.089 0.911 24 H 0.098 0.902 25 H 0.055 0.945 26 H 0.107 0.893 27 H 0.336 0.664 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.027 0.973 31 H 0.010 0.990 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.201 -17.763 1.150 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 C -0.299 4.299 4 N -0.098 5.098 5 N -0.082 5.082 6 C -0.278 4.278 7 C 0.003 3.997 8 N -0.317 5.317 9 C -0.053 4.053 10 C -0.048 4.048 11 C -0.561 4.561 12 H 0.090 0.910 13 C -0.133 4.133 14 N -0.541 5.541 15 Si 0.708 3.292 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.187 1.187 19 S 0.400 5.600 20 H 0.089 0.911 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.107 0.893 24 H 0.116 0.884 25 H 0.073 0.927 26 H 0.125 0.875 27 H 0.154 0.846 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.028 0.972 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.891 -17.437 2.138 24.371 hybrid contribution 0.538 -0.591 -0.739 1.089 sum -16.353 -18.029 1.399 24.380 Atomic orbital electron populations 1.21786 0.93225 1.02812 1.02820 1.20147 0.96861 0.86624 1.04717 1.29236 1.04673 1.04134 0.91893 1.71459 1.12452 0.99043 1.26848 1.71429 1.12681 1.07024 1.17090 1.29284 1.03153 1.03086 0.92229 1.20442 0.90313 0.88625 1.00313 1.60619 1.06906 1.08284 1.55916 1.22038 0.97996 0.87853 0.97434 1.19555 0.90515 0.97564 0.97130 1.21033 0.93233 0.96829 1.45030 0.90988 1.24997 0.98313 0.95609 0.94420 1.69908 1.14339 1.23323 1.46569 0.86762 0.80402 0.82882 0.79195 1.20364 1.21348 1.18749 1.83681 1.57780 1.06204 1.12288 0.91073 0.91822 0.92301 0.89286 0.88376 0.92707 0.87541 0.84628 0.95418 0.91050 0.95463 0.97219 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.90 37.16 0.37 -0.51 16 2 C -0.04 -0.30 6.54 -27.88 -0.18 -0.48 16 3 C -0.02 -0.23 6.78 -13.30 -0.09 -0.32 16 4 N -0.26 -3.87 11.66 32.58 0.38 -3.49 16 5 N -0.25 -3.96 11.66 32.58 0.38 -3.59 16 6 C 0.00 0.03 7.04 -13.30 -0.09 -0.06 16 7 C 0.14 1.86 6.28 -4.97 -0.03 1.83 16 8 N -0.69 -11.41 6.49 -115.05 -0.75 -12.15 16 9 C 0.07 1.44 5.62 -3.82 -0.02 1.42 16 10 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 11 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 12 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 15 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 19 S 0.16 1.62 23.04 -107.50 -2.48 -0.85 16 20 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 23 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.34 5.22 8.72 -39.29 -0.34 4.88 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 31 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 289.69 15.07 4.37 4.37 Total: -1.00 -32.77 289.69 -7.10 -39.86 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -4.50 Total: -2.54 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -0.60 Total: -11.74 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.79 Total: -46.28 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.48 Total: -0.85 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.77 -7.10 -39.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391916747.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.086 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds