Wall clock time and date at job start Mon Mar 30 2020 03:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47500 * 2 1 4 4 N 1.29414 * 125.70010 * 90.02073 * 3 2 1 5 5 N 1.26396 * 116.47623 * 179.73746 * 4 3 2 6 6 C 1.29409 * 116.47502 * 359.97438 * 5 4 3 7 7 C 1.50707 * 125.69372 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46829 * 89.97637 * 7 6 5 9 9 C 1.46898 * 110.99841 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47304 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47189 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99978 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99852 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99937 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99748 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47125 * 90.00691 * 15 13 11 17 17 H 1.48506 * 109.46887 * 210.00365 * 15 13 11 18 18 H 1.48493 * 109.47416 * 330.00094 * 15 13 11 19 19 S 1.71215 * 108.61179 * 0.02562 * 6 5 4 20 20 H 1.08996 * 109.47439 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.46926 * 300.00592 * 1 2 3 22 22 H 1.09001 * 109.46910 * 60.00302 * 1 2 3 23 23 H 1.09007 * 109.47102 * 239.99217 * 2 1 3 24 24 H 1.08996 * 109.46894 * 120.00188 * 2 1 3 25 25 H 1.09000 * 109.47136 * 209.97649 * 7 6 5 26 26 H 1.09001 * 109.46989 * 329.97993 * 7 6 5 27 27 H 1.00902 * 111.00109 * 56.04970 * 8 7 6 28 28 H 1.08996 * 109.47206 * 299.99805 * 9 8 7 29 29 H 1.09003 * 109.47142 * 60.00228 * 9 8 7 30 30 H 1.09006 * 109.47151 * 300.00627 * 10 9 8 31 31 H 1.09003 * 109.46695 * 60.00125 * 10 9 8 32 32 H 0.97000 * 120.00042 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2846 2.1326 1.0509 5 7 2.7053 3.3071 0.8483 6 6 2.8378 3.6673 -0.3875 7 6 3.3211 5.0128 -0.8643 8 7 4.7821 4.9830 -1.0150 9 6 5.2899 6.2806 -1.4800 10 6 6.8115 6.2110 -1.6241 11 6 7.3325 7.5423 -2.1005 12 1 6.6469 8.3569 -2.2820 13 6 8.6844 7.7205 -2.3048 14 7 9.1391 8.8825 -2.7201 15 14 9.8702 6.3118 -1.9902 16 1 10.0391 5.5196 -3.2349 17 1 11.1855 6.8568 -1.5681 18 1 9.3287 5.4391 -0.9177 19 16 2.3723 2.3602 -1.3906 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5140 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.8614 5.2445 -1.8250 26 1 3.0464 5.7763 -0.1364 27 1 5.0665 4.2403 -1.6359 28 1 4.8438 6.5207 -2.4451 29 1 5.0288 7.0533 -0.7568 30 1 7.2573 5.9710 -0.6587 31 1 7.0729 5.4382 -2.3471 32 1 10.0901 9.0078 -2.8641 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000391916747.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:47 Heat of formation + Delta-G solvation = 24.888009 kcal Electronic energy + Delta-G solvation = -14248.813605 eV Core-core repulsion = 11756.165437 eV Total energy + Delta-G solvation = -2492.648168 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.36751 -37.91856 -35.65348 -34.95383 -32.90762 -30.98397 -28.53118 -26.46608 -24.87656 -23.92063 -22.37870 -20.71568 -20.32492 -18.97311 -17.28213 -16.84402 -16.35250 -16.25465 -15.56355 -15.25914 -14.99709 -14.77567 -14.53333 -14.13237 -13.70331 -13.52091 -13.15114 -12.91631 -12.61423 -12.19457 -11.96809 -11.87149 -11.78880 -11.44035 -11.42853 -11.17167 -10.78734 -10.76582 -10.67376 -9.47635 -8.30154 -6.34539 -0.61231 -0.11795 0.30310 1.35726 1.39438 1.46927 1.51791 2.36419 2.84189 3.05667 3.28223 3.49773 3.84202 4.05897 4.25132 4.28602 4.39304 4.44228 4.53404 4.59964 4.75458 4.93483 4.96428 5.04559 5.23670 5.29214 5.45193 5.62461 5.93848 6.21847 6.36206 6.73775 7.30504 7.52342 8.86348 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.052422 B = 0.004013 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.002990 B = 6975.649652 C = 7174.514270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C -0.018 4.018 4 N -0.301 5.301 5 N -0.284 5.284 6 C -0.025 4.025 7 C 0.139 3.861 8 N -0.693 5.693 9 C 0.089 3.911 10 C -0.006 4.006 11 C -0.533 4.533 12 H 0.037 0.963 13 C 0.006 3.994 14 N -0.950 5.950 15 Si 0.951 3.049 16 H -0.263 1.263 17 H -0.285 1.285 18 H -0.252 1.252 19 S 0.230 5.770 20 H 0.094 0.906 21 H 0.046 0.954 22 H 0.062 0.938 23 H 0.116 0.884 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.345 0.655 28 H 0.035 0.965 29 H 0.061 0.939 30 H 0.018 0.982 31 H 0.022 0.978 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.845 -20.651 0.361 27.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.297 4.297 4 N -0.138 5.138 5 N -0.121 5.121 6 C -0.305 4.305 7 C 0.007 3.993 8 N -0.326 5.326 9 C -0.040 4.040 10 C -0.044 4.044 11 C -0.571 4.571 12 H 0.055 0.945 13 C -0.191 4.191 14 N -0.590 5.590 15 Si 0.775 3.225 16 H -0.187 1.187 17 H -0.211 1.211 18 H -0.176 1.176 19 S 0.474 5.526 20 H 0.113 0.887 21 H 0.065 0.935 22 H 0.081 0.919 23 H 0.135 0.865 24 H 0.119 0.881 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.163 0.837 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.561 -20.341 1.344 26.906 hybrid contribution 0.625 0.283 -0.543 0.875 sum -16.936 -20.057 0.801 26.264 Atomic orbital electron populations 1.21788 0.92168 1.04187 1.02207 1.20437 0.97628 0.84387 1.06208 1.29954 1.02538 1.05372 0.91835 1.71430 1.14546 0.99266 1.28602 1.71389 1.13792 1.08130 1.18837 1.29217 1.04215 1.04199 0.92841 1.20410 0.88476 0.89015 1.01424 1.60426 1.09189 1.06946 1.56034 1.21676 0.95332 0.89247 0.97708 1.19444 0.93381 0.95098 0.96447 1.21391 0.93058 0.98047 1.44609 0.94490 1.25966 1.00459 0.98419 0.94219 1.70054 1.14990 1.25780 1.48217 0.85644 0.77630 0.79440 0.79828 1.18750 1.21108 1.17599 1.83344 1.55912 1.03417 1.09898 0.88735 0.93484 0.91869 0.86548 0.88107 0.90066 0.88300 0.83720 0.94694 0.91999 0.96358 0.95996 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.90 71.98 0.71 -0.64 16 2 C -0.05 -0.53 6.54 29.85 0.20 -0.33 16 3 C -0.02 -0.37 6.78 88.46 0.60 0.23 16 4 N -0.30 -8.74 11.66 -50.85 -0.59 -9.33 16 5 N -0.28 -9.09 11.66 -50.85 -0.59 -9.68 16 6 C -0.02 -0.65 7.04 88.47 0.62 -0.03 16 7 C 0.14 3.62 6.28 85.56 0.54 4.16 16 8 N -0.69 -22.06 6.49 -517.91 -3.36 -25.42 16 9 C 0.09 3.38 5.62 86.31 0.49 3.86 16 10 C -0.01 -0.27 4.30 29.85 0.13 -0.14 16 11 C -0.53 -30.59 9.66 25.60 0.25 -30.34 16 12 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 13 C 0.01 0.38 5.47 84.66 0.46 0.84 16 14 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 15 Si 0.95 44.68 27.47 68.60 1.88 46.57 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 18 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 19 S 0.23 4.12 23.04 -56.49 -1.30 2.82 16 20 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 21 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 22 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 23 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.10 2.69 8.14 -2.39 -0.02 2.68 16 27 H 0.34 9.92 8.72 -89.69 -0.78 9.14 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.02 0.88 7.20 -2.38 -0.02 0.86 16 31 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 32 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -71.99 289.69 0.61 -71.39 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 0.28 Total: 5.38 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 3.99 Total: -22.39 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -4.25 Total: -103.77 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.57 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.30 Total: 2.82 kcal Total: -71.99 0.61 -71.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391916747.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.274 kcal (2) G-P(sol) polarization free energy of solvation -71.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds