Wall clock time and date at job start Mon Mar 30 2020 03:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29412 * 125.69547 * 2 1 4 4 N 1.26395 * 116.47319 * 180.26378 * 3 2 1 5 5 C 1.29412 * 116.47584 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.69287 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46995 * 89.95583 * 6 5 4 8 8 N 1.46900 * 109.46754 * 179.97438 * 7 6 5 9 9 C 1.46904 * 110.99649 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.46753 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46908 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00101 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99819 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99642 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00078 * 0.02562 * 13 11 10 16 16 H 1.48487 * 109.47164 * 89.99987 * 15 13 11 17 17 H 1.48500 * 109.46956 * 209.99988 * 15 13 11 18 18 H 1.48502 * 109.47143 * 329.99423 * 15 13 11 19 19 S 1.71211 * 108.60984 * 359.97438 * 5 4 3 20 20 H 1.09005 * 109.46931 * 269.69686 * 1 2 3 21 21 H 1.08996 * 109.47023 * 29.69154 * 1 2 3 22 22 H 1.08998 * 109.47204 * 149.69796 * 1 2 3 23 23 H 1.09000 * 109.46642 * 209.95794 * 6 5 4 24 24 H 1.08998 * 109.47098 * 329.95816 * 6 5 4 25 25 H 1.08991 * 109.47131 * 299.99953 * 7 6 5 26 26 H 1.09006 * 109.46733 * 60.00131 * 7 6 5 27 27 H 1.00901 * 111.00306 * 303.95084 * 8 7 6 28 28 H 1.09002 * 109.46951 * 299.99605 * 9 8 7 29 29 H 1.08993 * 109.47364 * 60.00173 * 9 8 7 30 30 H 1.09002 * 109.46747 * 299.99335 * 10 9 8 31 31 H 1.08993 * 109.47367 * 59.99779 * 10 9 8 32 32 H 0.96998 * 119.99629 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8484 -0.0052 5 6 3.8936 -0.3875 -0.0094 6 6 5.3233 -0.8641 -0.0154 7 6 5.8123 -1.0278 1.4251 8 7 7.2056 -1.4930 1.4192 9 6 7.7098 -1.6624 2.7886 10 6 9.1607 -2.1461 2.7416 11 6 9.6781 -2.3192 4.1464 12 1 9.0363 -2.1061 4.9884 13 6 10.9706 -2.7508 4.3566 14 7 11.4220 -2.9024 5.5826 15 14 12.0805 -3.1202 2.9002 16 1 12.8178 -1.8902 2.5153 17 1 13.0495 -4.1820 3.2731 18 1 11.2564 -3.5825 1.7546 19 16 2.5060 -1.3905 -0.0057 20 1 -0.3633 -0.0054 1.0277 21 1 -0.3633 0.8927 -0.5090 22 1 -0.3633 -0.8872 -0.5185 23 1 5.3845 -1.8225 -0.5311 24 1 5.9476 -0.1339 -0.5303 25 1 5.7510 -0.0695 1.9407 26 1 5.1879 -1.7581 1.9399 27 1 7.2993 -2.3479 0.8915 28 1 7.6621 -0.7085 3.3139 29 1 7.0984 -2.3969 3.3126 30 1 9.2088 -3.0999 2.2162 31 1 9.7719 -1.4113 2.2177 32 1 12.3314 -3.2057 5.7305 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392026764.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:48 Heat of formation + Delta-G solvation = 47.688434 kcal Electronic energy + Delta-G solvation = -14115.711557 eV Core-core repulsion = 11624.052090 eV Total energy + Delta-G solvation = -2491.659467 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.50363 -36.77174 -34.23156 -32.95118 -31.73845 -29.68635 -27.62272 -25.36044 -23.87315 -22.20475 -20.52598 -19.82359 -19.50536 -16.80575 -16.20075 -15.68478 -15.57009 -14.62702 -14.15900 -14.00622 -13.69816 -13.38905 -13.28240 -13.19621 -12.60995 -12.52613 -12.05744 -11.58061 -11.24610 -11.00051 -10.69713 -10.37661 -10.20557 -10.00085 -9.90811 -9.80909 -9.63833 -9.24474 -8.54549 -8.07061 -6.05198 -4.03944 0.17901 0.63472 1.10581 2.33260 3.32758 3.39481 3.43480 3.67650 4.16668 4.45491 4.54807 4.71166 4.86514 4.96219 4.98613 5.21266 5.24882 5.29393 5.42407 5.50540 5.84807 5.90802 6.15208 6.22629 6.73329 7.05135 7.34634 7.51549 7.68884 7.84835 8.34048 8.51807 8.98672 9.56871 11.08147 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.064783 B = 0.003484 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.109349 B = 8035.590071 C = 8137.563762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.025 4.025 3 N -0.262 5.262 4 N -0.258 5.258 5 C -0.001 4.001 6 C -0.041 4.041 7 C 0.066 3.934 8 N -0.692 5.692 9 C 0.073 3.927 10 C -0.010 4.010 11 C -0.523 4.523 12 H 0.071 0.929 13 C 0.067 3.933 14 N -0.904 5.904 15 Si 0.884 3.116 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.265 1.265 19 S 0.161 5.839 20 H 0.090 0.910 21 H 0.093 0.907 22 H 0.084 0.916 23 H 0.089 0.911 24 H 0.110 0.890 25 H 0.078 0.922 26 H 0.028 0.972 27 H 0.336 0.664 28 H 0.066 0.934 29 H 0.024 0.976 30 H 0.014 0.986 31 H 0.022 0.978 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.226 0.988 -13.860 25.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.304 4.304 3 N -0.100 5.100 4 N -0.095 5.095 5 C -0.280 4.280 6 C -0.083 4.083 7 C -0.065 4.065 8 N -0.323 5.323 9 C -0.055 4.055 10 C -0.047 4.047 11 C -0.561 4.561 12 H 0.089 0.911 13 C -0.135 4.135 14 N -0.543 5.543 15 Si 0.711 3.289 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.190 1.190 19 S 0.405 5.595 20 H 0.109 0.891 21 H 0.111 0.889 22 H 0.103 0.897 23 H 0.107 0.893 24 H 0.128 0.872 25 H 0.096 0.904 26 H 0.046 0.954 27 H 0.153 0.847 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.766 1.941 -13.818 25.019 hybrid contribution 0.224 -0.917 -0.290 0.987 sum -20.542 1.025 -14.108 24.941 Atomic orbital electron populations 1.20371 0.83990 1.04610 1.04365 1.29220 1.04302 0.91956 1.04945 1.71451 0.97051 1.26864 1.14633 1.71455 1.06254 1.17086 1.14681 1.29252 1.03152 0.92270 1.03352 1.20267 0.85580 1.02686 0.99730 1.21877 0.90013 1.01075 0.93564 1.60572 1.17258 1.37205 1.17229 1.21984 0.97516 0.99945 0.86006 1.19549 0.91448 0.95895 0.97856 1.21065 0.98383 1.45241 0.91436 0.91114 1.25017 0.97926 0.94841 0.95679 1.69919 1.17066 1.47281 1.19995 0.86716 0.80533 0.78304 0.83342 1.20198 1.21510 1.18970 1.83736 0.98123 1.11991 1.65663 0.89112 0.88859 0.89738 0.89272 0.87207 0.90396 0.95379 0.84666 0.91553 0.95804 0.96787 0.95967 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.48 36.01 0.38 -0.02 16 2 C -0.03 -0.25 7.53 -13.30 -0.10 -0.35 16 3 N -0.26 -3.55 11.66 32.58 0.38 -3.17 16 4 N -0.26 -3.73 11.66 32.58 0.38 -3.35 16 5 C 0.00 -0.01 6.78 -13.29 -0.09 -0.10 16 6 C -0.04 -0.45 6.08 -27.88 -0.17 -0.62 16 7 C 0.07 0.89 5.67 -3.82 -0.02 0.87 16 8 N -0.69 -11.12 6.50 -113.78 -0.74 -11.86 16 9 C 0.07 1.46 5.62 -3.82 -0.02 1.44 16 10 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 11 C -0.52 -14.98 9.66 -34.44 -0.33 -15.32 16 12 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 15 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 19 S 0.16 1.44 23.04 -107.50 -2.48 -1.04 16 20 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 21 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.34 4.86 8.73 -39.29 -0.34 4.52 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 31 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 289.71 15.07 4.37 4.37 Total: -1.00 -33.14 289.71 -7.06 -40.20 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -4.50 Total: -2.47 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -0.58 Total: -12.60 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.79 Total: -45.62 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.48 Total: -1.04 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.14 -7.06 -40.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392026764.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.887 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds