Wall clock time and date at job start Mon Mar 30 2020 03:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52991 * 109.47521 * 2 1 4 4 H 1.09000 * 109.46867 * 305.84880 * 3 2 1 5 5 C 1.50703 * 109.47425 * 185.85003 * 3 2 1 6 6 H 1.08001 * 119.99476 * 243.39716 * 5 3 2 7 7 C 1.37874 * 120.00063 * 63.39710 * 5 3 2 8 8 N 1.31507 * 119.99730 * 196.04591 * 7 5 3 9 9 Si 1.86802 * 120.00075 * 16.04047 * 7 5 3 10 10 H 1.48504 * 109.46960 * 92.77630 * 9 7 5 11 11 H 1.48495 * 109.47091 * 212.77547 * 9 7 5 12 12 H 1.48500 * 109.47006 * 332.77732 * 9 7 5 13 13 N 1.46895 * 109.47338 * 65.84672 * 3 2 1 14 14 C 1.46905 * 111.00181 * 258.58014 * 13 3 2 15 15 C 1.50699 * 109.47327 * 175.32245 * 14 13 3 16 16 C 1.31053 * 125.01349 * 89.99811 * 15 14 13 17 17 N 1.36590 * 115.98278 * 179.73449 * 16 15 14 18 18 H 0.97000 * 122.73718 * 179.97438 * 17 16 15 19 19 C 1.35692 * 114.52448 * 0.02562 * 17 16 15 20 20 N 1.31035 * 125.59419 * 179.97438 * 19 17 16 21 21 S 1.75905 * 125.01532 * 269.69388 * 15 14 13 22 22 H 1.08998 * 109.47432 * 55.84207 * 1 2 3 23 23 H 1.09004 * 109.47485 * 175.84676 * 1 2 3 24 24 H 1.09003 * 109.47275 * 295.84498 * 1 2 3 25 25 H 1.08997 * 109.46895 * 239.99302 * 2 1 3 26 26 H 1.09003 * 109.47096 * 120.00207 * 2 1 3 27 27 H 0.97003 * 119.99924 * 179.97438 * 8 7 5 28 28 H 1.00900 * 111.00320 * 134.62309 * 13 3 2 29 29 H 1.09000 * 109.47237 * 55.32445 * 14 13 3 30 30 H 1.08997 * 109.46893 * 295.32303 * 14 13 3 31 31 H 1.08004 * 122.01128 * 359.71507 * 16 15 14 32 32 H 0.96995 * 119.99661 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5937 1.9855 -0.8330 5 6 3.5400 1.4448 -0.1448 6 1 4.1585 1.8359 0.6495 7 6 4.1228 0.9478 -1.2913 8 7 5.4047 0.6546 -1.3033 9 14 3.0914 0.6909 -2.8274 10 1 3.1668 1.9027 -3.6826 11 1 3.6085 -0.4796 -3.5808 12 1 1.6789 0.4456 -2.4400 13 7 1.6690 2.0930 1.2637 14 6 0.4999 2.9641 1.0839 15 6 0.0796 3.5227 2.4190 16 6 0.5196 4.6429 2.9376 17 7 0.0094 4.9776 4.1596 18 1 0.2670 5.7844 4.6326 19 6 -0.8865 4.0890 4.6586 20 7 -1.5062 4.1946 5.8083 21 16 -1.0797 2.7712 3.5078 22 1 -0.3634 0.5770 -0.8504 23 1 -0.3634 -1.0250 -0.0744 24 1 -0.3634 0.4480 0.9249 25 1 1.8932 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 5.8146 0.3046 -2.1098 28 1 2.4475 2.6073 1.6478 29 1 -0.3206 2.3876 0.6568 30 1 0.7569 3.7831 0.4121 31 1 1.2425 5.2640 2.4295 32 1 -2.1329 3.5085 6.0862 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393667873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:36 Heat of formation + Delta-G solvation = 46.966539 kcal Electronic energy + Delta-G solvation = -15022.227505 eV Core-core repulsion = 12530.536734 eV Total energy + Delta-G solvation = -2491.690771 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.67211 -36.77751 -34.22020 -32.62806 -31.69932 -29.76267 -27.29854 -24.47165 -23.86557 -22.38907 -19.73881 -19.39899 -18.74616 -17.07509 -16.90603 -15.70995 -15.18494 -14.84855 -14.07344 -13.93752 -13.54520 -13.43904 -12.90185 -12.41202 -12.31740 -11.73515 -11.55822 -11.01100 -10.86863 -10.82161 -10.56789 -10.35032 -9.88345 -9.56989 -9.48607 -9.34782 -9.19175 -8.48599 -7.55994 -7.30012 -6.18631 -4.14251 1.33057 1.62496 1.94836 2.34455 2.91495 3.23293 3.33862 3.36779 4.35850 4.82445 5.11118 5.26004 5.29455 5.45907 5.64393 5.92203 6.04391 6.06165 6.08894 6.25426 6.55387 6.62763 6.74416 6.99110 7.01662 7.09044 7.40829 7.59923 7.90052 7.91377 8.27911 8.53580 8.89671 9.47321 10.94101 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.042516 B = 0.005775 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.411775 B = 4846.946363 C = 5173.921018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C 0.193 3.807 4 H 0.005 0.995 5 C -0.536 4.536 6 H 0.076 0.924 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.863 3.137 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.250 1.250 13 N -0.674 5.674 14 C 0.131 3.869 15 C -0.190 4.190 16 C 0.076 3.924 17 N -0.620 5.620 18 H 0.422 0.578 19 C 0.386 3.614 20 N -0.744 5.744 21 S -0.004 6.004 22 H 0.037 0.963 23 H 0.035 0.965 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.264 0.736 28 H 0.341 0.659 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.181 0.819 32 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.658 6.638 5.863 14.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C 0.084 3.916 4 H 0.023 0.977 5 C -0.573 4.573 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.525 5.525 9 Si 0.689 3.311 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.174 1.174 13 N -0.306 5.306 14 C 0.000 4.000 15 C -0.312 4.312 16 C -0.055 4.055 17 N -0.245 5.245 18 H 0.261 0.739 19 C -0.003 4.003 20 N -0.388 5.388 21 S 0.233 5.767 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.159 0.841 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.198 0.802 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.607 5.547 6.668 15.303 hybrid contribution 0.660 1.155 -1.582 2.067 sum -11.947 6.702 5.087 14.612 Atomic orbital electron populations 1.21883 0.98672 0.99610 1.00501 1.21855 0.92651 0.99307 1.00887 1.19463 0.95538 0.90834 0.85763 0.97732 1.21201 0.89368 1.42789 1.03987 0.90634 1.24889 0.94743 0.93960 0.98806 1.69987 1.11741 1.42325 1.28439 0.87207 0.82410 0.77866 0.83597 1.20821 1.21286 1.17360 1.60571 1.07366 1.32917 1.29765 1.20417 0.96048 0.95346 0.88218 1.23202 1.05990 0.98428 1.03606 1.20500 1.00306 0.98437 0.86241 1.41592 1.40175 1.24253 1.18499 0.73896 1.24168 0.91952 0.90594 0.93582 1.68971 1.21207 1.36124 1.12498 1.85761 1.48514 1.27294 1.15114 0.94375 0.94554 0.92718 0.93166 0.92181 0.92591 0.84061 0.90068 0.93940 0.80208 0.82476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.74 37.15 0.32 -2.35 16 2 C -0.11 -2.32 4.85 -26.74 -0.13 -2.45 16 3 C 0.19 4.25 1.75 -68.87 -0.12 4.13 16 4 H 0.01 0.11 6.35 -51.93 -0.33 -0.22 16 5 C -0.54 -14.15 9.03 -34.44 -0.31 -14.46 16 6 H 0.08 2.16 7.67 -52.49 -0.40 1.76 16 7 C 0.08 2.19 5.31 -17.82 -0.09 2.09 16 8 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 9 Si 0.86 20.39 25.76 -169.99 -4.38 16.01 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.25 -5.56 5.49 56.52 0.31 -5.24 16 13 N -0.67 -12.64 6.07 -109.23 -0.66 -13.30 16 14 C 0.13 2.01 5.50 -4.97 -0.03 1.98 16 15 C -0.19 -2.54 5.98 -36.04 -0.22 -2.75 16 16 C 0.08 0.83 11.14 -17.16 -0.19 0.64 16 17 N -0.62 -6.70 5.66 -13.88 -0.08 -6.78 16 18 H 0.42 3.57 8.96 -40.82 -0.37 3.21 16 19 C 0.39 4.99 8.75 -89.33 -0.78 4.21 16 20 N -0.74 -9.88 14.18 30.43 0.43 -9.44 16 21 S 0.00 -0.05 23.35 -107.50 -2.51 -2.56 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.94 6.66 -51.93 -0.35 0.60 16 25 H 0.05 1.13 4.88 -51.93 -0.25 0.88 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.34 6.45 7.96 -39.29 -0.31 6.14 16 29 H 0.08 1.27 6.02 -51.93 -0.31 0.96 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.18 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.36 4.24 8.92 -40.82 -0.36 3.87 16 LS Contribution 276.07 15.07 4.16 4.16 Total: -1.00 -29.61 276.07 -7.84 -37.45 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -4.03 Total: 8.82 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.55 Total: -8.96 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.46 Total: -54.92 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.38 Total: 16.01 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.51 Total: -2.56 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.61 -7.84 -37.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393667873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.419 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds