Wall clock time and date at job start Mon Mar 30 2020 03:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.31029 * 119.99523 * 2 1 4 4 N 1.35700 * 125.59216 * 180.30751 * 3 2 1 5 5 H 0.96997 * 122.73650 * 359.97308 * 4 3 2 6 6 C 1.36591 * 114.52251 * 180.18443 * 4 3 2 7 7 C 1.50705 * 122.00531 * 179.81510 * 6 4 3 8 8 N 1.46898 * 109.46661 * 274.73385 * 7 6 4 9 9 C 1.46906 * 110.99888 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46727 * 325.00012 * 9 8 7 11 11 C 1.52995 * 109.46889 * 85.00162 * 9 8 7 12 12 C 1.50706 * 109.47211 * 204.99964 * 9 8 7 13 13 H 1.08001 * 119.99930 * 0.02562 * 12 9 8 14 14 C 1.37871 * 119.99762 * 180.02562 * 12 9 8 15 15 N 1.31519 * 119.99631 * 180.02562 * 14 12 9 16 16 Si 1.86800 * 120.00377 * 359.97438 * 14 12 9 17 17 H 1.48498 * 109.46925 * 90.00223 * 16 14 12 18 18 H 1.48497 * 109.47251 * 210.00352 * 16 14 12 19 19 H 1.48507 * 109.46917 * 330.00578 * 16 14 12 20 20 C 1.31048 * 115.98532 * 359.53818 * 6 4 3 21 21 S 1.75903 * 109.96640 * 0.25193 * 20 6 4 22 22 H 1.08996 * 109.46746 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46718 * 299.99994 * 1 2 3 24 24 H 1.08993 * 109.47390 * 60.00064 * 1 2 3 25 25 H 1.08995 * 109.47155 * 154.73434 * 7 6 4 26 26 H 1.08997 * 109.47111 * 34.73355 * 7 6 4 27 27 H 1.00902 * 111.00533 * 56.04452 * 8 7 6 28 28 H 1.09002 * 109.47311 * 59.99901 * 11 9 8 29 29 H 1.09002 * 109.46959 * 180.02562 * 11 9 8 30 30 H 1.09003 * 109.47335 * 299.99780 * 11 9 8 31 31 H 0.97005 * 119.99726 * 179.97438 * 15 14 12 32 32 H 1.07998 * 125.01790 * 180.27011 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1201 1.1348 0.0000 4 7 3.4706 1.2672 -0.0059 5 1 4.0722 0.5063 -0.0104 6 6 3.9137 2.5592 -0.0005 7 6 5.3816 2.9002 -0.0017 8 7 5.8870 2.8930 1.3776 9 6 7.3181 3.2226 1.4157 10 1 7.8096 2.8091 0.5351 11 6 7.4911 4.7427 1.4299 12 6 7.9360 2.6350 2.6583 13 1 7.3267 2.0726 3.3503 14 6 9.2792 2.8154 2.9117 15 7 9.8186 2.3022 3.9958 16 14 10.3333 3.7875 1.7144 17 1 10.3224 5.2222 2.0975 18 1 11.7266 3.2754 1.7530 19 1 9.7886 3.6377 0.3410 20 6 2.9856 3.4844 0.0000 21 16 1.3929 2.7377 0.0006 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 5.5244 3.8898 -0.4358 26 1 5.9255 2.1627 -0.5918 27 1 5.7079 2.0059 1.8238 28 1 6.9994 5.1561 2.3106 29 1 8.5529 4.9872 1.4577 30 1 7.0442 5.1677 0.5312 31 1 10.7637 2.4289 4.1739 32 1 3.1712 4.5483 -0.0002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393680556.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:59 Heat of formation + Delta-G solvation = 30.529283 kcal Electronic energy + Delta-G solvation = -14798.256497 eV Core-core repulsion = 12305.852954 eV Total energy + Delta-G solvation = -2492.403544 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.95898 -37.90126 -36.23317 -34.47708 -32.38892 -30.73931 -27.95701 -27.31953 -26.27782 -22.97987 -21.78360 -21.56260 -19.08610 -18.59805 -17.88795 -17.18804 -16.32101 -15.90969 -15.51265 -15.48858 -15.07974 -14.82087 -14.49700 -14.14348 -13.95026 -13.54147 -13.45992 -12.91466 -12.76001 -12.60268 -12.13652 -12.00478 -11.45769 -11.27930 -11.03122 -10.76740 -10.56686 -10.30711 -9.22961 -8.30943 -8.28646 -6.36132 0.28446 0.57693 0.90621 1.27510 1.34661 1.38272 1.49096 1.84095 2.32467 3.05591 3.50734 3.80128 3.95562 4.22883 4.45198 4.53379 4.54079 4.68036 4.75388 4.76616 4.82419 4.87962 4.92106 5.05373 5.50181 5.63516 5.69624 5.93267 6.06025 6.42098 6.58830 6.72745 6.77210 7.30708 8.86141 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.047433 B = 0.004937 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.169531 B = 5670.525280 C = 5990.846257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.610 5.610 3 C 0.349 3.651 4 N -0.617 5.617 5 H 0.426 0.574 6 C 0.129 3.871 7 C 0.115 3.885 8 N -0.675 5.675 9 C 0.187 3.813 10 H 0.008 0.992 11 C -0.136 4.136 12 C -0.527 4.527 13 H 0.036 0.964 14 C 0.013 3.987 15 N -0.949 5.949 16 Si 0.955 3.045 17 H -0.266 1.266 18 H -0.302 1.302 19 H -0.243 1.243 20 C -0.245 4.245 21 S 0.000 6.000 22 H 0.094 0.906 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.115 0.885 26 H 0.049 0.951 27 H 0.335 0.665 28 H 0.050 0.950 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.266 0.734 32 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.415 2.782 -12.441 19.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.346 5.346 3 C -0.036 4.036 4 N -0.241 5.241 5 H 0.266 0.734 6 C 0.016 3.984 7 C -0.017 4.017 8 N -0.306 5.306 9 C 0.077 3.923 10 H 0.025 0.975 11 C -0.194 4.194 12 C -0.565 4.565 13 H 0.055 0.945 14 C -0.185 4.185 15 N -0.588 5.588 16 Si 0.782 3.218 17 H -0.192 1.192 18 H -0.231 1.231 19 H -0.166 1.166 20 C -0.386 4.386 21 S 0.239 5.761 22 H 0.112 0.888 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.133 0.867 26 H 0.067 0.933 27 H 0.152 0.848 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -15.736 2.973 -12.224 20.147 hybrid contribution 2.294 -0.817 -0.058 2.436 sum -13.442 2.156 -12.282 18.335 Atomic orbital electron populations 1.22228 0.84507 1.03738 1.01001 1.71810 1.11080 1.19665 1.32063 1.24530 0.88332 0.94117 0.96620 1.41597 1.04193 1.08167 1.70187 0.73417 1.19138 0.97021 0.82339 0.99859 1.20891 0.86135 1.03379 0.91257 1.60545 1.17298 1.37744 1.15059 1.19420 0.84870 0.93449 0.94516 0.97496 1.22005 0.98799 0.97081 1.01524 1.21396 0.94315 1.33609 1.07188 0.94538 1.25841 0.99331 0.96482 0.96849 1.70054 1.13306 1.47340 1.28150 0.85759 0.76575 0.78681 0.80765 1.19238 1.23062 1.16619 1.24329 0.92099 1.04314 1.17848 1.85236 1.09183 0.97686 1.83993 0.88751 0.92630 0.92132 0.86669 0.93255 0.84760 0.93130 0.95131 0.91499 0.92494 0.78682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.41 127.77 1.33 2.09 16 2 N -0.61 -16.92 11.06 -369.62 -4.09 -21.01 16 3 C 0.35 9.28 8.36 179.90 1.50 10.78 16 4 N -0.62 -15.56 5.65 -185.90 -1.05 -16.61 16 5 H 0.43 10.07 8.96 -92.71 -0.83 9.24 16 6 C 0.13 3.14 6.26 41.73 0.26 3.41 16 7 C 0.11 2.98 5.89 85.56 0.50 3.49 16 8 N -0.68 -23.85 6.29 -499.45 -3.14 -26.99 16 9 C 0.19 7.87 2.19 44.17 0.10 7.96 16 10 H 0.01 0.31 6.86 -2.39 -0.02 0.30 16 11 C -0.14 -5.23 8.89 71.98 0.64 -4.58 16 12 C -0.53 -28.56 9.17 25.60 0.23 -28.32 16 13 H 0.04 2.22 7.86 -2.91 -0.02 2.20 16 14 C 0.01 0.71 5.45 84.65 0.46 1.17 16 15 N -0.95 -58.01 13.96 21.45 0.30 -57.71 16 16 Si 0.96 42.81 24.37 68.60 1.67 44.48 16 17 H -0.27 -11.41 6.87 99.48 0.68 -10.72 16 18 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 19 H -0.24 -9.77 6.53 99.48 0.65 -9.12 16 20 C -0.24 -5.54 10.79 67.73 0.73 -4.81 16 21 S 0.00 0.01 22.41 -56.49 -1.27 -1.26 16 22 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.12 2.59 7.37 -2.39 -0.02 2.57 16 26 H 0.05 1.23 8.06 -2.39 -0.02 1.21 16 27 H 0.34 12.61 8.22 -89.69 -0.74 11.88 16 28 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.03 1.21 3.27 -2.39 -0.01 1.21 16 30 H 0.07 2.03 7.45 -2.39 -0.02 2.01 16 31 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 32 H 0.20 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -63.81 278.66 -2.31 -66.12 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.50 Total: 21.78 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: 5.76 Total: -8.81 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -7.98 Total: -122.32 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.67 Total: 44.48 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -1.27 Total: -1.26 kcal Total: -63.81 -2.31 -66.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393680556.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.650 kcal (2) G-P(sol) polarization free energy of solvation -63.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds