Wall clock time and date at job start Mon Mar 30 2020 03:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99438 * 2 1 4 4 H 1.48495 * 109.47461 * 270.00039 * 3 2 1 5 5 H 1.48503 * 109.47163 * 30.00422 * 3 2 1 6 6 H 1.48498 * 109.46983 * 149.99994 * 3 2 1 7 7 C 1.37868 * 120.00643 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00488 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00141 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.47272 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99574 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46606 * 180.02562 * 11 10 9 13 13 N 1.46494 * 109.47211 * 65.00271 * 12 11 10 14 14 C 1.34143 * 118.70833 * 89.99506 * 13 12 11 15 15 O 1.21225 * 119.35859 * 359.48265 * 14 13 12 16 16 C 1.50588 * 121.28214 * 179.49678 * 14 13 12 17 17 C 1.53245 * 109.15898 * 29.07612 * 16 14 13 18 18 C 1.53244 * 108.72232 * 304.29124 * 17 16 14 19 19 C 1.34142 * 118.70413 * 270.01773 * 13 12 11 20 20 O 1.21224 * 119.35979 * 0.52049 * 19 13 12 21 21 H 0.96994 * 120.00538 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.46707 * 59.99496 * 9 7 2 23 23 H 1.08993 * 109.46890 * 300.00114 * 9 7 2 24 24 H 1.09002 * 109.47413 * 60.00646 * 11 10 9 25 25 H 1.08996 * 109.47464 * 299.99747 * 11 10 9 26 26 H 1.08994 * 109.47195 * 304.99857 * 12 11 10 27 27 H 1.09008 * 109.46951 * 184.99830 * 12 11 10 28 28 H 1.08995 * 109.52601 * 269.17006 * 16 14 13 29 29 H 1.09000 * 109.57518 * 149.01388 * 16 14 13 30 30 H 1.09002 * 109.62166 * 64.10935 * 17 16 14 31 31 H 1.08998 * 109.62170 * 184.47449 * 17 16 14 32 32 H 1.08993 * 109.52529 * 175.61203 * 18 17 16 33 33 H 1.09003 * 109.52089 * 295.80759 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0467 -1.4000 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2513 -2.4991 0.0005 10 8 2.1800 -3.5852 0.0005 11 6 1.5655 -4.8753 0.0011 12 6 2.6486 -5.9560 0.0017 13 7 3.4064 -5.8871 1.2535 14 6 2.9865 -6.6114 2.3016 15 8 1.9908 -7.2940 2.1917 16 6 3.7279 -6.5927 3.6123 17 6 4.4225 -5.2368 3.7779 18 6 5.3239 -4.9942 2.5626 19 6 4.4927 -5.1019 1.3066 20 8 4.8140 -4.4647 0.3267 21 1 -0.4851 0.8400 0.0004 22 1 0.6249 -2.5571 -0.8897 23 1 0.6243 -2.5567 0.8902 24 1 0.9451 -4.9827 -0.8887 25 1 0.9457 -4.9822 0.8913 26 1 3.3221 -5.7958 -0.8401 27 1 2.1827 -6.9374 -0.0874 28 1 4.4737 -7.3875 3.6203 29 1 3.0251 -6.7445 4.4315 30 1 3.6736 -4.4473 3.8417 31 1 5.0258 -5.2431 4.6857 32 1 5.7645 -3.9995 2.6287 33 1 6.1152 -5.7435 2.5407 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395420644.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:49 Heat of formation + Delta-G solvation = -123.524168 kcal Electronic energy + Delta-G solvation = -17781.201371 eV Core-core repulsion = 14807.071947 eV Total energy + Delta-G solvation = -2974.129425 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.41474 -38.52002 -36.76712 -35.37294 -34.50183 -32.64935 -29.56791 -28.74410 -26.89144 -23.85561 -23.15883 -22.32688 -21.85984 -18.14748 -17.23585 -17.12247 -16.53242 -16.13006 -15.38048 -14.69393 -14.62938 -14.55108 -14.27877 -14.15056 -13.75160 -13.26760 -12.74466 -12.31784 -12.15991 -12.05449 -11.49264 -11.33675 -11.24574 -10.84421 -10.83136 -10.67415 -10.10354 -10.06704 -9.81674 -9.31393 -9.06692 -8.80080 -8.14729 -6.07945 -4.09154 1.76875 2.70937 3.05783 3.32087 3.36670 3.42541 4.04896 4.37114 4.49542 4.55756 4.64604 4.88518 5.04849 5.20877 5.28260 5.41882 5.48593 5.52515 5.61238 5.67775 5.71572 5.88632 5.98274 6.12111 6.29713 7.11343 7.21293 7.44638 7.68062 7.83651 8.05961 8.18465 8.60419 9.05263 9.55515 11.03751 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.006535 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.342203 B = 4283.563162 C = 4652.178699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.383 6.383 11 C 0.048 3.952 12 C 0.099 3.901 13 N -0.558 5.558 14 C 0.521 3.479 15 O -0.513 6.513 16 C -0.140 4.140 17 C -0.127 4.127 18 C -0.138 4.138 19 C 0.515 3.485 20 O -0.467 6.467 21 H 0.263 0.737 22 H 0.004 0.996 23 H 0.002 0.998 24 H 0.052 0.948 25 H 0.040 0.960 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.319 -13.508 7.807 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.549 4.549 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.302 6.302 11 C -0.031 4.031 12 C -0.022 4.022 13 N -0.301 5.301 14 C 0.311 3.689 15 O -0.388 6.388 16 C -0.180 4.180 17 C -0.164 4.164 18 C -0.178 4.178 19 C 0.303 3.697 20 O -0.336 6.336 21 H 0.073 0.927 22 H 0.022 0.978 23 H 0.020 0.980 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.131 0.869 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.037 -13.346 7.218 17.660 hybrid contribution -0.136 0.900 -0.024 0.911 sum 8.901 -12.446 7.194 16.908 Atomic orbital electron populations 1.69967 1.06102 1.27088 1.50814 1.24951 0.94957 0.99408 0.95246 0.86343 0.79642 0.82265 0.78285 1.20434 1.21113 1.19631 1.21061 0.94111 0.89256 1.50426 0.91485 1.20189 0.88771 0.83793 0.95185 1.87980 1.34747 1.12364 1.95140 1.22536 0.94209 0.86292 1.00025 1.21848 0.95001 0.99597 0.85772 1.46498 1.27237 1.42009 1.14388 1.20940 0.84605 0.77686 0.85661 1.90711 1.24884 1.39605 1.83568 1.21914 1.01349 1.00087 0.94625 1.21740 0.99596 0.96655 0.98432 1.21979 0.98314 1.06194 0.91289 1.20918 0.80074 0.77814 0.90873 1.90804 1.67075 1.38839 1.36913 0.92709 0.97795 0.98042 0.92982 0.94226 0.88237 0.88264 0.87554 0.87170 0.89902 0.89052 0.86905 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.41 29.54 -169.99 -5.02 17.39 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -15.59 9.43 -34.44 -0.32 -15.91 16 8 H 0.07 2.07 7.81 -52.48 -0.41 1.66 16 9 C 0.19 5.59 5.69 36.01 0.20 5.80 16 10 O -0.38 -9.73 8.94 -47.11 -0.42 -10.15 16 11 C 0.05 0.97 6.28 37.16 0.23 1.20 16 12 C 0.10 1.64 5.44 -4.04 -0.02 1.62 16 13 N -0.56 -8.66 2.52 -115.62 -0.29 -8.95 16 14 C 0.52 7.16 7.47 -11.32 -0.08 7.08 16 15 O -0.51 -8.51 16.45 5.61 0.09 -8.42 16 16 C -0.14 -1.21 6.07 -27.81 -0.17 -1.38 16 17 C -0.13 -1.06 6.07 -26.48 -0.16 -1.22 16 18 C -0.14 -1.39 6.11 -27.61 -0.17 -1.56 16 19 C 0.51 8.07 7.10 -11.12 -0.08 7.99 16 20 O -0.47 -9.46 15.51 -6.27 -0.10 -9.56 16 21 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.00 0.13 8.14 -51.93 -0.42 -0.30 16 23 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.10 1.67 7.29 -51.93 -0.38 1.29 16 27 H 0.10 1.43 7.29 -51.92 -0.38 1.05 16 28 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 284.81 15.07 4.29 4.29 Total: -1.00 -36.55 284.81 -5.91 -42.46 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: -4.53 Total: -5.33 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -0.67 Total: 5.15 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.45 Total: -35.83 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.43 Total: -28.13 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -36.55 -5.91 -42.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395420644.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.063 kcal (2) G-P(sol) polarization free energy of solvation -36.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds