Wall clock time and date at job start Mon Mar 30 2020 03:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99438 * 2 1 4 4 H 1.48495 * 109.47461 * 270.00039 * 3 2 1 5 5 H 1.48503 * 109.47163 * 30.00422 * 3 2 1 6 6 H 1.48498 * 109.46983 * 149.99994 * 3 2 1 7 7 C 1.37868 * 120.00643 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00488 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00141 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.47272 * 179.97438 * 9 7 2 11 11 C 1.42903 * 113.99574 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46606 * 180.02562 * 11 10 9 13 13 N 1.46494 * 109.47211 * 65.00271 * 12 11 10 14 14 C 1.34143 * 118.70833 * 89.99506 * 13 12 11 15 15 O 1.21225 * 119.35859 * 359.48265 * 14 13 12 16 16 C 1.50588 * 121.28214 * 179.49678 * 14 13 12 17 17 C 1.53245 * 109.15898 * 29.07612 * 16 14 13 18 18 C 1.53244 * 108.72232 * 304.29124 * 17 16 14 19 19 C 1.34142 * 118.70413 * 270.01773 * 13 12 11 20 20 O 1.21224 * 119.35979 * 0.52049 * 19 13 12 21 21 H 0.96994 * 120.00538 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.46707 * 59.99496 * 9 7 2 23 23 H 1.08993 * 109.46890 * 300.00114 * 9 7 2 24 24 H 1.09002 * 109.47413 * 60.00646 * 11 10 9 25 25 H 1.08996 * 109.47464 * 299.99747 * 11 10 9 26 26 H 1.08994 * 109.47195 * 304.99857 * 12 11 10 27 27 H 1.09008 * 109.46951 * 184.99830 * 12 11 10 28 28 H 1.08995 * 109.52601 * 269.17006 * 16 14 13 29 29 H 1.09000 * 109.57518 * 149.01388 * 16 14 13 30 30 H 1.09002 * 109.62166 * 64.10935 * 17 16 14 31 31 H 1.08998 * 109.62170 * 184.47449 * 17 16 14 32 32 H 1.08993 * 109.52529 * 175.61203 * 18 17 16 33 33 H 1.09003 * 109.52089 * 295.80759 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0467 -1.4000 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2513 -2.4991 0.0005 10 8 2.1800 -3.5852 0.0005 11 6 1.5655 -4.8753 0.0011 12 6 2.6486 -5.9560 0.0017 13 7 3.4064 -5.8871 1.2535 14 6 2.9865 -6.6114 2.3016 15 8 1.9908 -7.2940 2.1917 16 6 3.7279 -6.5927 3.6123 17 6 4.4225 -5.2368 3.7779 18 6 5.3239 -4.9942 2.5626 19 6 4.4927 -5.1019 1.3066 20 8 4.8140 -4.4647 0.3267 21 1 -0.4851 0.8400 0.0004 22 1 0.6249 -2.5571 -0.8897 23 1 0.6243 -2.5567 0.8902 24 1 0.9451 -4.9827 -0.8887 25 1 0.9457 -4.9822 0.8913 26 1 3.3221 -5.7958 -0.8401 27 1 2.1827 -6.9374 -0.0874 28 1 4.4737 -7.3875 3.6203 29 1 3.0251 -6.7445 4.4315 30 1 3.6736 -4.4473 3.8417 31 1 5.0258 -5.2431 4.6857 32 1 5.7645 -3.9995 2.6287 33 1 6.1152 -5.7435 2.5407 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395420644.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:49 Heat of formation + Delta-G solvation = -149.701414 kcal Electronic energy + Delta-G solvation = -17782.336502 eV Core-core repulsion = 14807.071947 eV Total energy + Delta-G solvation = -2975.264555 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.56878 -39.75944 -38.68548 -36.45328 -35.76749 -34.86149 -31.16567 -29.60205 -29.04747 -25.12394 -24.55352 -24.22034 -23.13090 -19.19978 -18.68142 -18.40940 -18.35401 -17.46379 -17.33755 -16.44692 -16.28835 -15.68838 -15.61930 -15.27065 -14.99856 -14.89748 -14.03178 -13.82902 -13.55894 -13.28103 -13.19801 -12.83824 -12.78085 -12.59212 -12.16670 -12.12931 -11.94282 -11.35518 -11.17811 -11.07943 -10.89486 -10.69696 -10.33156 -8.36995 -6.50213 0.64347 1.35748 1.39475 1.51667 1.59053 1.93820 2.31042 2.96157 3.02658 3.17626 3.69539 3.79202 3.92698 3.97816 4.04804 4.25621 4.37131 4.40102 4.53594 4.62609 4.73409 4.77066 4.86167 4.95198 5.05092 5.07773 5.22654 5.49101 5.89181 6.06752 6.44495 6.58110 6.73826 6.88072 7.21725 8.75619 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.006535 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.342203 B = 4283.563162 C = 4652.178699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.985 3.015 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.210 3.790 10 O -0.393 6.393 11 C 0.041 3.959 12 C 0.104 3.896 13 N -0.567 5.567 14 C 0.515 3.485 15 O -0.547 6.547 16 C -0.130 4.130 17 C -0.119 4.119 18 C -0.130 4.130 19 C 0.506 3.494 20 O -0.527 6.527 21 H 0.272 0.728 22 H -0.016 1.016 23 H -0.019 1.019 24 H 0.061 0.939 25 H 0.032 0.968 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.148 0.852 29 H 0.125 0.875 30 H 0.053 0.947 31 H 0.138 0.862 32 H 0.111 0.889 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.084 -13.615 9.597 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.075 0.925 9 C 0.135 3.865 10 O -0.313 6.313 11 C -0.037 4.037 12 C -0.018 4.018 13 N -0.310 5.310 14 C 0.308 3.692 15 O -0.423 6.423 16 C -0.168 4.168 17 C -0.157 4.157 18 C -0.169 4.169 19 C 0.298 3.702 20 O -0.400 6.400 21 H 0.081 0.919 22 H 0.002 0.998 23 H -0.001 1.001 24 H 0.079 0.921 25 H 0.050 0.950 26 H 0.112 0.888 27 H 0.140 0.860 28 H 0.166 0.834 29 H 0.143 0.857 30 H 0.072 0.928 31 H 0.156 0.844 32 H 0.129 0.871 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.798 -13.489 9.039 19.500 hybrid contribution -0.757 0.833 -0.590 1.271 sum 10.041 -12.656 8.449 18.232 Atomic orbital electron populations 1.70071 1.07788 1.28787 1.50341 1.25993 0.95993 1.03440 0.93713 0.85166 0.78378 0.76796 0.78972 1.19263 1.19405 1.18837 1.21302 0.93820 0.90747 1.52520 0.92516 1.19817 0.88604 0.84936 0.93148 1.87960 1.34600 1.13628 1.95113 1.22813 0.95753 0.84987 1.00097 1.21708 0.94151 0.98964 0.87016 1.46745 1.27268 1.42483 1.14485 1.22079 0.84350 0.76164 0.86629 1.90695 1.26520 1.40944 1.84180 1.22066 1.02013 1.01503 0.91258 1.21768 0.99090 0.95442 0.99352 1.22119 0.98547 1.07584 0.88688 1.22159 0.79798 0.76173 0.92065 1.90775 1.68636 1.41205 1.39382 0.91901 0.99795 1.00134 0.92062 0.94953 0.88820 0.85993 0.83447 0.85714 0.92773 0.84440 0.87092 0.83565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.71 13.29 21.44 0.28 -57.43 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.98 45.81 29.54 68.60 2.03 47.83 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -34.37 9.43 25.60 0.24 -34.13 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 9 C 0.21 12.63 5.69 71.24 0.41 13.04 16 10 O -0.39 -20.96 8.94 -137.62 -1.23 -22.19 16 11 C 0.04 1.74 6.28 71.98 0.45 2.20 16 12 C 0.10 3.52 5.44 86.38 0.47 3.99 16 13 N -0.57 -17.52 2.52 -757.25 -1.91 -19.43 16 14 C 0.51 13.48 7.47 87.72 0.66 14.14 16 15 O -0.55 -17.78 16.45 -2.86 -0.05 -17.82 16 16 C -0.13 -1.75 6.07 29.89 0.18 -1.57 16 17 C -0.12 -1.58 6.07 30.76 0.19 -1.39 16 18 C -0.13 -2.28 6.11 30.02 0.18 -2.10 16 19 C 0.51 15.77 7.10 87.85 0.62 16.39 16 20 O -0.53 -22.01 15.51 8.50 0.13 -21.88 16 21 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 22 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 23 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 24 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.09 3.28 7.29 -2.39 -0.02 3.27 16 27 H 0.12 3.54 7.29 -2.38 -0.02 3.52 16 28 H 0.15 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.14 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -83.18 284.81 4.22 -78.96 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: 1.10 Total: 0.52 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 3.86 Total: 11.44 kcal Atomic # 7 Polarization: -75.23 SS G_CDS: -1.62 Total: -76.85 kcal Atomic # 8 Polarization: -60.75 SS G_CDS: -1.15 Total: -61.90 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -83.18 4.22 -78.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395420644.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.745 kcal (2) G-P(sol) polarization free energy of solvation -83.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds