Wall clock time and date at job start Mon Mar 30 2020 04:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00373 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00166 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21274 * 120.00425 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99541 * 179.97438 * 13 12 2 16 16 H 1.09005 * 112.84981 * 311.19242 * 15 13 12 17 17 C 1.53778 * 113.61401 * 82.50139 * 15 13 12 18 18 C 1.53788 * 87.08112 * 139.97986 * 17 15 13 19 19 C 1.53780 * 113.61115 * 179.97438 * 15 13 12 20 20 H 1.09001 * 113.61558 * 334.56041 * 19 15 13 21 21 C 1.50697 * 113.61681 * 105.47156 * 19 15 13 22 22 O 1.20824 * 119.99774 * 359.97438 * 21 19 15 23 23 O 1.34226 * 120.00020 * 180.02562 * 21 19 15 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 28 28 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 29 29 H 1.09004 * 113.61384 * 254.52802 * 17 15 13 30 30 H 1.08996 * 113.61819 * 25.43383 * 17 15 13 31 31 H 1.08997 * 113.61150 * 220.01847 * 18 17 15 32 32 H 1.08994 * 113.69062 * 89.12217 * 18 17 15 33 33 H 0.96711 * 117.00007 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5878 16 1 2.1340 -1.6719 3.7715 17 6 4.1813 -0.8383 3.6540 18 6 4.0591 -0.5397 5.1576 19 6 2.7391 0.1761 4.8278 20 1 2.8630 1.2325 4.5894 21 6 1.6488 -0.0733 5.8378 22 8 0.8135 -0.9208 5.6282 23 8 1.6051 0.6466 6.9698 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7089 1.1613 -3.4844 28 1 2.2491 -1.6318 1.1527 29 1 4.5575 -1.8380 3.4365 30 1 4.6994 -0.0592 3.0948 31 1 4.8347 0.1268 5.5348 32 1 3.9312 -1.4308 5.7721 33 1 0.8869 0.4509 7.5872 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397147735.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:09 Heat of formation + Delta-G solvation = -120.134848 kcal Electronic energy + Delta-G solvation = -17391.299038 eV Core-core repulsion = 14417.316585 eV Total energy + Delta-G solvation = -2973.982453 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.86718 -39.16807 -37.19791 -36.01709 -34.70779 -32.35006 -29.23495 -27.38147 -26.34750 -25.22703 -22.24398 -21.49903 -19.71118 -19.14881 -18.26853 -17.45882 -16.83001 -15.86074 -15.42724 -15.29735 -14.52678 -14.28164 -13.96858 -13.35394 -12.81963 -12.59334 -12.43558 -12.18279 -11.74646 -11.57387 -11.47356 -11.15952 -11.01857 -10.91087 -10.70315 -10.62210 -10.34893 -10.28382 -10.22524 -9.03131 -8.94775 -8.54426 -7.89718 -6.11516 -4.20750 2.18995 3.01139 3.24123 3.31640 3.33113 3.34896 4.08679 4.28513 4.38542 4.43754 4.67995 4.88894 5.20830 5.37725 5.50982 5.55688 5.66123 5.72453 5.80485 5.88396 6.27284 6.45981 6.85062 7.00262 7.17549 7.47561 7.57888 7.70904 7.88221 7.92866 8.16273 8.68327 8.78913 9.13492 9.46915 10.94568 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.043997 B = 0.005315 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.249879 B = 5267.087688 C = 5584.035436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.704 5.704 13 C 0.512 3.488 14 O -0.557 6.557 15 C -0.120 4.120 16 H 0.122 0.878 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.089 4.089 20 H 0.139 0.861 21 C 0.491 3.509 22 O -0.514 6.514 23 O -0.516 6.516 24 H 0.090 0.910 25 H 0.014 0.986 26 H 0.026 0.974 27 H 0.264 0.736 28 H 0.390 0.610 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.478 -3.858 14.811 16.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.351 5.351 13 C 0.296 3.704 14 O -0.437 6.437 15 C -0.141 4.141 16 H 0.139 0.861 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.108 4.108 20 H 0.156 0.844 21 C 0.334 3.666 22 O -0.402 6.402 23 O -0.327 6.327 24 H 0.108 0.892 25 H 0.033 0.967 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.222 0.778 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 5.263 -3.039 14.319 15.555 hybrid contribution -0.316 -1.017 -0.491 1.172 sum 4.946 -4.056 13.828 15.236 Atomic orbital electron populations 1.22077 0.98481 0.99165 1.00863 1.18763 0.91050 0.93989 0.80083 0.93375 1.21258 1.32333 1.13168 0.90303 0.91995 1.24899 0.94828 0.94959 0.99086 1.69921 1.35967 1.22498 1.23751 0.86388 0.78598 0.79505 0.82563 1.19727 1.20895 1.20885 1.46488 1.64520 1.13556 1.10494 1.20080 0.78420 0.87333 0.84565 1.90639 1.51678 1.16198 1.85162 1.22815 0.98322 1.00222 0.92756 0.86057 1.22795 0.93667 1.03617 0.95799 1.22835 0.95021 1.00389 0.97515 1.22437 0.92567 1.03966 0.91876 0.84358 1.23391 0.85090 0.77452 0.80704 1.90710 1.39565 1.33169 1.76729 1.84560 1.54831 1.61960 1.31385 0.89153 0.96695 0.95442 0.92644 0.77819 0.89740 0.88758 0.89643 0.89467 0.73572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.26 37.16 0.34 -3.44 16 2 C 0.26 6.79 2.56 -69.08 -0.18 6.62 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 5 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.10 11.32 55.43 0.63 -24.47 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.70 -14.89 5.07 -54.93 -0.28 -15.17 16 13 C 0.51 10.31 7.32 -10.98 -0.08 10.23 16 14 O -0.56 -13.37 15.56 5.56 0.09 -13.29 16 15 C -0.12 -1.76 3.47 -90.96 -0.32 -2.07 16 16 H 0.12 1.72 7.43 -51.93 -0.39 1.34 16 17 C -0.12 -1.35 7.63 -25.92 -0.20 -1.55 16 18 C -0.12 -1.16 7.63 -25.93 -0.20 -1.36 16 19 C -0.09 -1.18 3.58 -90.98 -0.33 -1.51 16 20 H 0.14 1.98 7.43 -51.93 -0.39 1.59 16 21 C 0.49 6.76 7.85 36.00 0.28 7.04 16 22 O -0.51 -8.59 16.66 -18.75 -0.31 -8.91 16 23 O -0.52 -5.48 13.42 -39.25 -0.53 -6.01 16 24 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.39 7.14 8.54 -40.82 -0.35 6.79 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 33 H 0.41 2.51 9.10 45.56 0.41 2.93 16 LS Contribution 287.19 15.07 4.33 4.33 Total: -1.00 -33.32 287.19 -5.65 -38.96 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.49 Total: 7.75 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.06 Total: 1.15 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.35 Total: -39.64 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.75 Total: -28.20 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -33.32 -5.65 -38.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397147735.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.173 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds