Wall clock time and date at job start Mon Mar 30 2020 04:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00373 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00166 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.34775 * 119.99693 * 275.00198 * 12 2 1 14 14 O 1.21274 * 120.00425 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99541 * 179.97438 * 13 12 2 16 16 H 1.09005 * 112.84981 * 311.19242 * 15 13 12 17 17 C 1.53778 * 113.61401 * 82.50139 * 15 13 12 18 18 C 1.53788 * 87.08112 * 139.97986 * 17 15 13 19 19 C 1.53780 * 113.61115 * 179.97438 * 15 13 12 20 20 H 1.09001 * 113.61558 * 334.56041 * 19 15 13 21 21 C 1.50697 * 113.61681 * 105.47156 * 19 15 13 22 22 O 1.20824 * 119.99774 * 359.97438 * 21 19 15 23 23 O 1.34226 * 120.00020 * 180.02562 * 21 19 15 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 28 28 H 0.97000 * 120.00117 * 94.99845 * 12 2 1 29 29 H 1.09004 * 113.61384 * 254.52802 * 17 15 13 30 30 H 1.08996 * 113.61819 * 25.43383 * 17 15 13 31 31 H 1.08997 * 113.61150 * 220.01847 * 18 17 15 32 32 H 1.08994 * 113.69062 * 89.12217 * 18 17 15 33 33 H 0.96711 * 117.00007 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8590 1.1586 2.4115 15 6 2.6489 -0.7288 3.5878 16 1 2.1340 -1.6719 3.7715 17 6 4.1813 -0.8383 3.6540 18 6 4.0591 -0.5397 5.1576 19 6 2.7391 0.1761 4.8278 20 1 2.8630 1.2325 4.5894 21 6 1.6488 -0.0733 5.8378 22 8 0.8135 -0.9208 5.6282 23 8 1.6051 0.6466 6.9698 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7089 1.1613 -3.4844 28 1 2.2491 -1.6318 1.1527 29 1 4.5575 -1.8380 3.4365 30 1 4.6994 -0.0592 3.0948 31 1 4.8347 0.1268 5.5348 32 1 3.9312 -1.4308 5.7721 33 1 0.8869 0.4509 7.5872 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397147735.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:09 Heat of formation + Delta-G solvation = -144.890439 kcal Electronic energy + Delta-G solvation = -17392.372521 eV Core-core repulsion = 14417.316585 eV Total energy + Delta-G solvation = -2975.055936 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.99434 -40.53943 -38.48576 -37.04628 -36.62667 -34.31323 -31.14386 -28.41225 -27.62858 -27.30188 -23.31858 -23.10581 -21.39428 -20.37106 -19.48282 -18.81070 -18.11387 -17.43156 -17.15803 -16.64238 -16.20452 -15.72500 -15.10648 -14.96674 -14.46817 -14.01671 -13.74594 -13.59966 -13.23488 -13.00741 -12.85881 -12.73304 -12.59731 -12.54014 -12.30943 -12.13896 -12.10081 -11.52919 -11.38047 -11.10817 -10.67526 -10.53449 -9.76935 -8.17908 -6.35662 1.13946 1.45188 1.45828 1.58379 1.76056 2.06729 2.37254 2.67556 3.12600 3.21829 3.46760 3.70358 3.87512 4.19953 4.46083 4.60749 4.67584 4.72014 4.82792 4.88402 4.97887 5.04127 5.07208 5.34596 5.41271 5.56974 5.60881 5.66557 5.88480 6.08005 6.72486 6.94430 6.97462 7.31837 7.53723 8.88950 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.043997 B = 0.005315 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.249879 B = 5267.087688 C = 5584.035436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H 0.000 1.000 4 C -0.544 4.544 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.975 3.025 9 H -0.258 1.258 10 H -0.280 1.280 11 H -0.283 1.283 12 N -0.701 5.701 13 C 0.506 3.494 14 O -0.603 6.603 15 C -0.121 4.121 16 H 0.131 0.869 17 C -0.112 4.112 18 C -0.096 4.096 19 C -0.100 4.100 20 H 0.124 0.876 21 C 0.496 3.504 22 O -0.550 6.550 23 O -0.507 6.507 24 H 0.068 0.932 25 H 0.007 0.993 26 H 0.039 0.961 27 H 0.265 0.735 28 H 0.406 0.594 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.108 -5.738 15.717 18.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.017 0.983 4 C -0.582 4.582 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.800 3.200 9 H -0.182 1.182 10 H -0.206 1.206 11 H -0.209 1.209 12 N -0.349 5.349 13 C 0.293 3.707 14 O -0.485 6.485 15 C -0.142 4.142 16 H 0.149 0.851 17 C -0.150 4.150 18 C -0.133 4.133 19 C -0.120 4.120 20 H 0.142 0.858 21 C 0.340 3.660 22 O -0.440 6.440 23 O -0.320 6.320 24 H 0.086 0.914 25 H 0.026 0.974 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.241 0.759 29 H 0.130 0.870 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 6.910 -4.943 15.278 17.481 hybrid contribution -0.867 -0.342 -0.695 1.163 sum 6.043 -5.285 14.582 16.646 Atomic orbital electron populations 1.21915 0.98718 0.99342 0.99360 1.18360 0.90850 0.92072 0.82205 0.98255 1.21569 1.32495 1.13525 0.90639 0.90635 1.25844 0.94851 0.95577 1.02462 1.70070 1.37130 1.24060 1.24571 0.85247 0.78050 0.78531 0.78191 1.18157 1.20598 1.20870 1.46266 1.64688 1.14224 1.09758 1.21092 0.77019 0.86971 0.85607 1.90611 1.53389 1.18511 1.86012 1.22910 1.00946 1.00141 0.90188 0.85106 1.22833 0.90248 1.04943 0.96958 1.22830 0.92951 1.00937 0.96617 1.22538 0.94751 1.03248 0.91450 0.85804 1.23440 0.84479 0.76894 0.81230 1.90699 1.40793 1.34895 1.77662 1.84510 1.55722 1.60943 1.30849 0.91352 0.97429 0.94215 0.92556 0.75943 0.87030 0.89713 0.87295 0.87442 0.71208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.13 9.26 71.98 0.67 -6.47 16 2 C 0.27 14.28 2.56 44.24 0.11 14.39 16 3 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 4 C -0.54 -29.00 8.73 25.60 0.22 -28.77 16 5 H 0.08 3.73 7.74 -2.91 -0.02 3.71 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -53.38 11.32 21.45 0.24 -53.13 16 8 Si 0.98 42.02 29.54 68.60 2.03 44.04 16 9 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 N -0.70 -29.88 5.07 -446.10 -2.26 -32.14 16 13 C 0.51 20.63 7.32 87.66 0.64 21.28 16 14 O -0.60 -30.09 15.56 -3.01 -0.05 -30.14 16 15 C -0.12 -3.39 3.47 -11.01 -0.04 -3.43 16 16 H 0.13 3.48 7.43 -2.38 -0.02 3.46 16 17 C -0.11 -2.19 7.63 31.12 0.24 -1.95 16 18 C -0.10 -1.52 7.63 31.11 0.24 -1.28 16 19 C -0.10 -2.52 3.58 -11.03 -0.04 -2.56 16 20 H 0.12 3.52 7.43 -2.39 -0.02 3.50 16 21 C 0.50 12.94 7.85 71.23 0.56 13.50 16 22 O -0.55 -17.86 16.66 21.97 0.37 -17.49 16 23 O -0.51 -9.75 13.42 -51.37 -0.69 -10.44 16 24 H 0.07 3.92 6.07 -2.39 -0.01 3.91 16 25 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.41 14.50 8.54 -92.71 -0.79 13.71 16 29 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 1.86 8.09 -2.39 -0.02 1.84 16 31 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.11 1.34 8.09 -2.39 -0.02 1.32 16 33 H 0.43 4.36 9.10 -74.05 -0.67 3.69 16 Total: -1.00 -74.20 287.19 2.36 -71.84 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -0.32 Total: 21.65 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 3.05 Total: 5.82 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -2.02 Total: -85.28 kcal Atomic # 8 Polarization: -57.70 SS G_CDS: -0.37 Total: -58.07 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -74.20 2.36 -71.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397147735.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.053 kcal (2) G-P(sol) polarization free energy of solvation -74.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds