Wall clock time and date at job start Mon Mar 30 2020 03:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00414 * 2 1 4 4 H 1.48502 * 109.47417 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47000 * 299.99903 * 3 2 1 6 6 H 1.48499 * 109.47127 * 59.99262 * 3 2 1 7 7 C 1.37882 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99800 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99906 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46926 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.46996 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99777 * 179.97438 * 11 10 9 13 13 O 1.21276 * 120.00209 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99751 * 179.97438 * 12 11 10 15 15 H 1.08997 * 112.91128 * 308.25244 * 14 12 11 16 16 C 1.53781 * 113.61417 * 79.50398 * 14 12 11 17 17 C 1.53786 * 87.17350 * 139.93966 * 16 14 12 18 18 C 1.53782 * 113.61283 * 177.00213 * 14 12 11 19 19 H 1.08997 * 113.61668 * 334.56418 * 18 14 12 20 20 C 1.50701 * 113.61600 * 105.38800 * 18 14 12 21 21 O 1.20822 * 120.00079 * 359.97438 * 20 18 14 22 22 O 1.34230 * 119.99715 * 179.97438 * 20 18 14 23 23 H 0.96998 * 119.99999 * 0.02562 * 1 2 3 24 24 H 1.08990 * 109.47638 * 59.99545 * 9 7 2 25 25 H 1.09000 * 109.46919 * 299.99393 * 9 7 2 26 26 H 1.09003 * 109.47535 * 59.99573 * 10 9 7 27 27 H 1.09000 * 109.46948 * 299.99525 * 10 9 7 28 28 H 0.96998 * 120.00039 * 359.97438 * 11 10 9 29 29 H 1.09002 * 113.61445 * 254.52965 * 16 14 12 30 30 H 1.09002 * 113.61408 * 25.34696 * 16 14 12 31 31 H 1.08993 * 113.61491 * 89.15923 * 17 16 14 32 32 H 1.09000 * 113.61138 * 220.06261 * 17 16 14 33 33 H 0.96700 * 116.99825 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 0.0012 12 6 2.1865 -6.0980 0.0007 13 8 3.3992 -6.0981 -0.0006 14 6 1.4329 -7.4031 0.0020 15 1 0.6833 -7.4595 0.7912 16 6 0.9010 -7.8086 -1.3828 17 6 1.3050 -9.2503 -1.0315 18 6 2.3434 -8.6402 -0.0724 19 1 3.3076 -8.4451 -0.5417 20 6 2.4678 -9.3777 1.2359 21 8 1.8797 -8.9784 2.2129 22 8 3.2320 -10.4784 1.3158 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8895 25 1 0.6240 -2.5567 0.8903 26 1 2.8719 -3.6044 0.8905 27 1 2.8717 -3.6044 -0.8895 28 1 0.5426 -4.9308 0.0019 29 1 -0.1745 -7.6715 -1.4947 30 1 1.4701 -7.3850 -2.2103 31 1 0.5204 -9.8126 -0.5254 32 1 1.7470 -9.7954 -1.8656 33 1 3.2812 -10.9171 2.1761 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397172243.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:25 Heat of formation + Delta-G solvation = -126.974238 kcal Electronic energy + Delta-G solvation = -16835.495916 eV Core-core repulsion = 13861.216885 eV Total energy + Delta-G solvation = -2974.279031 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.05578 -39.42864 -37.42883 -36.15321 -34.83696 -32.83999 -29.88295 -27.60550 -26.94960 -24.46019 -22.38688 -21.21987 -20.57233 -19.34017 -18.36010 -17.49213 -16.72920 -16.39961 -15.68643 -15.26728 -14.84236 -14.51643 -14.26360 -13.86065 -13.22438 -12.95242 -12.71750 -12.37005 -12.21638 -11.77157 -11.69821 -11.25268 -11.19889 -11.03975 -10.82908 -10.62892 -10.50480 -10.33956 -9.78536 -9.43878 -9.15394 -8.55380 -8.36120 -6.09661 -4.12411 2.04707 2.85320 2.92541 3.28350 3.35886 3.40848 3.68696 4.06911 4.23005 4.41754 4.44898 4.67777 5.18752 5.22874 5.27548 5.37746 5.44471 5.49927 5.62606 5.68113 6.07023 6.33036 6.33898 6.34526 6.73394 6.90964 7.51569 7.61529 7.74575 7.88586 8.00269 8.27355 8.62407 8.93826 9.52525 11.02012 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.049933 B = 0.004062 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.620381 B = 6890.984338 C = 7066.331887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.717 5.717 12 C 0.516 3.484 13 O -0.552 6.552 14 C -0.120 4.120 15 H 0.126 0.874 16 C -0.123 4.123 17 C -0.119 4.119 18 C -0.089 4.089 19 H 0.138 0.862 20 C 0.491 3.509 21 O -0.513 6.513 22 O -0.515 6.515 23 H 0.261 0.739 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.399 0.601 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 -19.753 -1.848 19.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.002 4.002 11 N -0.366 5.366 12 C 0.301 3.699 13 O -0.431 6.431 14 C -0.141 4.141 15 H 0.144 0.856 16 C -0.160 4.160 17 C -0.157 4.157 18 C -0.108 4.108 19 H 0.156 0.844 20 C 0.333 3.667 21 O -0.401 6.401 22 O -0.327 6.327 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.232 0.768 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 0.959 -19.286 -1.960 19.409 hybrid contribution -0.003 0.737 0.763 1.061 sum 0.956 -18.549 -1.196 18.612 Atomic orbital electron populations 1.69963 1.06092 1.26768 1.50472 1.24997 0.94892 0.99422 0.94984 0.86459 0.80173 0.83333 0.77620 1.19582 1.20927 1.20923 1.21094 0.93282 0.90390 1.51224 0.92208 1.19332 0.94211 0.91128 0.97889 1.21745 0.96085 0.81548 1.00790 1.46290 1.10603 1.06447 1.73245 1.20199 0.87983 0.85252 0.76463 1.90662 1.13944 1.87706 1.50780 1.22805 0.98765 0.91543 1.00976 0.85566 1.22822 1.02516 0.95266 0.95417 1.22873 0.97207 0.97196 0.98414 1.22459 1.02322 0.94605 0.91437 0.84415 1.23323 0.74517 0.77939 0.90885 1.90722 1.44644 1.66071 1.38651 1.84550 1.65375 1.40777 1.41986 0.92896 0.95891 0.95897 0.92579 0.92515 0.76756 0.89442 0.88773 0.89262 0.89446 0.73395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.59 5.61 -4.04 -0.02 2.57 16 11 N -0.72 -12.58 5.56 -60.29 -0.33 -12.91 16 12 C 0.52 8.75 7.35 -10.98 -0.08 8.66 16 13 O -0.55 -11.34 15.92 5.56 0.09 -11.25 16 14 C -0.12 -1.47 3.47 -90.96 -0.32 -1.79 16 15 H 0.13 1.52 7.44 -51.93 -0.39 1.14 16 16 C -0.12 -1.10 7.62 -25.92 -0.20 -1.30 16 17 C -0.12 -0.94 7.65 -25.82 -0.20 -1.14 16 18 C -0.09 -1.00 3.56 -90.86 -0.32 -1.32 16 19 H 0.14 1.65 7.47 -51.93 -0.39 1.26 16 20 C 0.49 5.95 7.86 36.01 0.28 6.24 16 21 O -0.51 -7.80 16.66 -18.75 -0.31 -8.11 16 22 O -0.52 -4.75 13.42 -39.26 -0.53 -5.28 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 24 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.40 6.04 8.47 -40.82 -0.35 5.69 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 31 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.41 2.01 9.10 45.56 0.41 2.42 16 LS Contribution 292.08 15.07 4.40 4.40 Total: -1.00 -34.30 292.08 -6.00 -40.30 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -3.62 Total: 3.08 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.41 Total: -1.22 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.40 Total: -38.34 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.75 Total: -24.63 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.30 -6.00 -40.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397172243.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.670 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds