Wall clock time and date at job start Mon Mar 30 2020 03:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00414 * 2 1 4 4 H 1.48502 * 109.47417 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47000 * 299.99903 * 3 2 1 6 6 H 1.48499 * 109.47127 * 59.99262 * 3 2 1 7 7 C 1.37882 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99800 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99906 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46926 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.46996 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99777 * 179.97438 * 11 10 9 13 13 O 1.21276 * 120.00209 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99751 * 179.97438 * 12 11 10 15 15 H 1.08997 * 112.91128 * 308.25244 * 14 12 11 16 16 C 1.53781 * 113.61417 * 79.50398 * 14 12 11 17 17 C 1.53786 * 87.17350 * 139.93966 * 16 14 12 18 18 C 1.53782 * 113.61283 * 177.00213 * 14 12 11 19 19 H 1.08997 * 113.61668 * 334.56418 * 18 14 12 20 20 C 1.50701 * 113.61600 * 105.38800 * 18 14 12 21 21 O 1.20822 * 120.00079 * 359.97438 * 20 18 14 22 22 O 1.34230 * 119.99715 * 179.97438 * 20 18 14 23 23 H 0.96998 * 119.99999 * 0.02562 * 1 2 3 24 24 H 1.08990 * 109.47638 * 59.99545 * 9 7 2 25 25 H 1.09000 * 109.46919 * 299.99393 * 9 7 2 26 26 H 1.09003 * 109.47535 * 59.99573 * 10 9 7 27 27 H 1.09000 * 109.46948 * 299.99525 * 10 9 7 28 28 H 0.96998 * 120.00039 * 359.97438 * 11 10 9 29 29 H 1.09002 * 113.61445 * 254.52965 * 16 14 12 30 30 H 1.09002 * 113.61408 * 25.34696 * 16 14 12 31 31 H 1.08993 * 113.61491 * 89.15923 * 17 16 14 32 32 H 1.09000 * 113.61138 * 220.06261 * 17 16 14 33 33 H 0.96700 * 116.99825 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 0.0012 12 6 2.1865 -6.0980 0.0007 13 8 3.3992 -6.0981 -0.0006 14 6 1.4329 -7.4031 0.0020 15 1 0.6833 -7.4595 0.7912 16 6 0.9010 -7.8086 -1.3828 17 6 1.3050 -9.2503 -1.0315 18 6 2.3434 -8.6402 -0.0724 19 1 3.3076 -8.4451 -0.5417 20 6 2.4678 -9.3777 1.2359 21 8 1.8797 -8.9784 2.2129 22 8 3.2320 -10.4784 1.3158 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8895 25 1 0.6240 -2.5567 0.8903 26 1 2.8719 -3.6044 0.8905 27 1 2.8717 -3.6044 -0.8895 28 1 0.5426 -4.9308 0.0019 29 1 -0.1745 -7.6715 -1.4947 30 1 1.4701 -7.3850 -2.2103 31 1 0.5204 -9.8126 -0.5254 32 1 1.7470 -9.7954 -1.8656 33 1 3.2812 -10.9171 2.1761 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397172243.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:24 Heat of formation + Delta-G solvation = -152.321067 kcal Electronic energy + Delta-G solvation = -16836.595037 eV Core-core repulsion = 13861.216885 eV Total energy + Delta-G solvation = -2975.378152 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.03325 -40.60841 -38.48608 -37.05372 -36.56282 -34.82589 -31.72804 -28.57318 -28.08390 -26.25040 -23.20193 -23.00435 -21.92069 -20.31217 -19.33954 -18.67689 -18.34984 -17.72344 -16.82133 -16.67845 -16.45800 -16.29880 -15.22232 -15.13414 -14.78973 -14.32778 -13.91493 -13.66239 -13.25013 -13.17517 -12.95178 -12.62959 -12.60538 -12.51830 -12.29509 -12.14204 -11.68920 -11.55119 -11.45341 -11.38565 -10.71942 -10.61835 -10.04296 -8.25066 -6.35612 1.13154 1.40530 1.41533 1.54651 1.58500 2.01114 2.32533 2.47694 3.09729 3.16878 3.42635 3.67236 3.78030 4.09963 4.43336 4.46571 4.49720 4.59774 4.66166 4.80629 4.83578 4.96672 5.03495 5.27057 5.33234 5.48257 5.56796 5.57246 5.77655 6.15182 6.59840 6.77659 6.96173 7.23831 7.33867 8.87019 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.049933 B = 0.004062 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.620381 B = 6890.984338 C = 7066.331887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.714 5.714 12 C 0.514 3.486 13 O -0.591 6.591 14 C -0.122 4.122 15 H 0.132 0.868 16 C -0.113 4.113 17 C -0.099 4.099 18 C -0.098 4.098 19 H 0.129 0.871 20 C 0.494 3.506 21 O -0.551 6.551 22 O -0.507 6.507 23 H 0.266 0.734 24 H 0.012 0.988 25 H 0.007 0.993 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.412 0.588 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.259 -20.756 -2.539 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.015 3.985 11 N -0.364 5.364 12 C 0.301 3.699 13 O -0.472 6.472 14 C -0.143 4.143 15 H 0.149 0.851 16 C -0.151 4.151 17 C -0.136 4.136 18 C -0.118 4.118 19 H 0.147 0.853 20 C 0.338 3.662 21 O -0.442 6.442 22 O -0.321 6.321 23 H 0.075 0.925 24 H 0.031 0.969 25 H 0.025 0.975 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.247 0.753 29 H 0.128 0.872 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 0.792 -20.335 -2.653 20.522 hybrid contribution 0.079 0.985 1.005 1.409 sum 0.870 -19.349 -1.649 19.439 Atomic orbital electron populations 1.70060 1.07527 1.27971 1.50999 1.25867 0.95799 1.03083 0.94360 0.85391 0.78926 0.78746 0.77948 1.19040 1.20037 1.20268 1.21497 0.93551 0.91983 1.51567 0.92417 1.19138 0.94213 0.91728 0.96427 1.21235 0.95099 0.82435 0.99688 1.46135 1.11170 1.05538 1.73518 1.21054 0.87762 0.86289 0.74766 1.90637 1.15893 1.88360 1.52352 1.22916 0.98948 0.88884 1.03572 0.85058 1.22868 1.03748 0.95652 0.92828 1.22874 0.96110 0.96669 0.97937 1.22583 1.02678 0.94572 0.91956 0.85322 1.23477 0.73943 0.78140 0.90592 1.90711 1.46398 1.67248 1.39833 1.84506 1.64217 1.39815 1.43535 0.92503 0.96946 0.97507 0.94087 0.93237 0.75259 0.87188 0.89108 0.87746 0.87176 0.71183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.43 13.29 21.45 0.28 -54.14 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.55 -30.90 9.11 25.60 0.23 -30.67 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.02 1.14 5.09 29.85 0.15 1.29 16 10 C 0.14 6.11 5.61 86.38 0.48 6.60 16 11 N -0.71 -25.18 5.56 -463.05 -2.57 -27.75 16 12 C 0.51 17.38 7.35 87.66 0.64 18.03 16 13 O -0.59 -24.62 15.92 -3.02 -0.05 -24.67 16 14 C -0.12 -2.86 3.47 -11.01 -0.04 -2.90 16 15 H 0.13 3.00 7.44 -2.39 -0.02 2.98 16 16 C -0.11 -1.74 7.62 31.12 0.24 -1.50 16 17 C -0.10 -1.23 7.65 31.18 0.24 -1.00 16 18 C -0.10 -2.06 3.56 -10.95 -0.04 -2.10 16 19 H 0.13 2.98 7.47 -2.39 -0.02 2.96 16 20 C 0.49 11.35 7.86 71.24 0.56 11.91 16 21 O -0.55 -16.40 16.66 21.98 0.37 -16.03 16 22 O -0.51 -8.40 13.42 -51.42 -0.69 -9.09 16 23 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 24 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.41 12.37 8.47 -92.71 -0.79 11.58 16 29 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.50 8.09 -2.39 -0.02 1.48 16 31 H 0.10 1.06 8.10 -2.39 -0.02 1.04 16 32 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.43 3.40 9.10 -74.06 -0.67 2.73 16 Total: -1.00 -74.18 292.08 1.98 -72.20 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -0.32 Total: 13.07 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 2.94 Total: 0.56 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.29 Total: -81.89 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -0.37 Total: -49.80 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -74.18 1.98 -72.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397172243.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.117 kcal (2) G-P(sol) polarization free energy of solvation -74.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds