Wall clock time and date at job start Mon Mar 30 2020 03:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47613 * 2 1 4 4 N 1.46904 * 109.47409 * 120.00357 * 2 1 3 5 5 C 1.46907 * 110.99837 * 275.00130 * 4 2 1 6 6 C 1.52997 * 109.47140 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47184 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47024 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00391 * 359.97438 * 8 7 6 10 10 C 1.37885 * 119.99949 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00124 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99545 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46843 * 90.00817 * 12 10 8 14 14 H 1.48506 * 109.46995 * 210.00227 * 12 10 8 15 15 H 1.48493 * 109.47271 * 330.00259 * 12 10 8 16 16 C 1.50700 * 109.47095 * 239.99859 * 2 1 3 17 17 C 1.35347 * 123.76719 * 85.00163 * 16 2 1 18 18 S 1.72111 * 104.15669 * 180.02562 * 17 16 2 19 19 N 1.56517 * 95.88258 * 0.02562 * 18 17 16 20 20 N 1.27570 * 109.22531 * 359.97438 * 19 18 17 21 21 H 1.09001 * 109.46621 * 299.99856 * 1 2 3 22 22 H 1.09003 * 109.46840 * 59.99982 * 1 2 3 23 23 H 1.08998 * 109.46904 * 179.97438 * 1 2 3 24 24 H 1.00904 * 111.00058 * 38.94480 * 4 2 1 25 25 H 1.09004 * 109.46611 * 299.99551 * 5 4 2 26 26 H 1.09001 * 109.47316 * 59.99618 * 5 4 2 27 27 H 1.08991 * 109.47387 * 300.00281 * 6 5 4 28 28 H 1.09001 * 109.46835 * 59.99928 * 6 5 4 29 29 H 1.09004 * 109.46921 * 300.00372 * 7 6 5 30 30 H 1.08995 * 109.46488 * 59.99891 * 7 6 5 31 31 H 0.96996 * 119.99886 * 179.97438 * 11 10 8 32 32 H 1.08001 * 127.91945 * 0.04078 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5951 -0.5333 3.5745 7 6 2.6611 0.4199 4.7695 8 6 3.1666 -0.3244 5.9783 9 1 3.4155 -1.3725 5.9021 10 6 3.3104 0.3326 7.1821 11 7 3.7511 -0.3171 8.2372 12 14 2.8792 2.1453 7.3140 13 1 1.4498 2.2879 7.6905 14 1 3.7301 2.7823 8.3511 15 1 3.1149 2.8067 6.0056 16 6 2.0323 -0.7104 -1.2304 17 6 2.1906 -0.1107 -2.4334 18 16 2.7778 -1.3652 -3.4551 19 7 2.7780 -2.4800 -2.3565 20 7 2.3655 -1.9848 -1.2555 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.4495 -1.4980 1.4101 25 1 2.7589 1.0461 2.1182 26 1 1.0871 0.6162 2.5526 27 1 1.9186 -1.3566 3.8029 28 1 3.5905 -0.9273 3.3690 29 1 3.3380 1.2431 4.5406 30 1 1.6660 0.8143 4.9749 31 1 3.8526 0.1452 9.0839 32 1 1.9939 0.9191 -2.6927 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398264905.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:16 Heat of formation + Delta-G solvation = 58.431951 kcal Electronic energy + Delta-G solvation = -14520.214936 eV Core-core repulsion = 12029.021343 eV Total energy + Delta-G solvation = -2491.193593 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.06184 -37.24586 -34.23095 -32.53247 -31.19831 -29.21899 -27.18597 -26.14611 -23.60485 -21.99812 -21.13155 -20.09750 -18.26630 -16.76685 -16.16936 -15.80292 -15.25068 -14.74482 -14.68479 -14.09554 -13.55083 -13.00433 -12.76429 -12.60904 -12.27873 -12.05868 -11.77931 -11.60233 -11.49336 -10.93676 -10.77146 -10.20303 -10.05112 -9.93912 -9.78112 -9.71956 -9.53519 -9.14106 -8.50560 -8.26349 -6.00566 -3.98175 0.09631 0.96015 1.57026 2.14721 3.31985 3.39298 3.42873 3.91894 4.17173 4.47797 4.69756 4.80572 4.94719 4.99618 5.23686 5.33113 5.50317 5.60998 5.69399 5.75771 5.93533 6.18147 6.56262 6.59694 6.94167 7.15245 7.38444 7.46203 7.56635 7.73828 7.83897 8.59150 9.05664 9.61873 11.13131 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.051442 B = 0.003893 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.168954 B = 7190.070227 C = 7431.582612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.164 3.836 3 H 0.099 0.901 4 N -0.676 5.676 5 C 0.057 3.943 6 C -0.100 4.100 7 C -0.012 4.012 8 C -0.518 4.518 9 H 0.072 0.928 10 C 0.064 3.936 11 N -0.905 5.905 12 Si 0.881 3.119 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.266 1.266 16 C 0.049 3.951 17 C -0.298 4.298 18 S 0.398 5.602 19 N -0.287 5.287 20 N -0.210 5.210 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.349 0.651 25 H 0.067 0.933 26 H 0.027 0.973 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.015 0.985 30 H 0.009 0.991 31 H 0.262 0.738 32 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.223 3.509 -24.807 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.050 3.950 3 H 0.117 0.883 4 N -0.307 5.307 5 C -0.071 4.071 6 C -0.138 4.138 7 C -0.050 4.050 8 C -0.557 4.557 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.544 5.544 12 Si 0.708 3.292 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.191 1.191 16 C -0.097 4.097 17 C -0.455 4.455 18 S 0.534 5.466 19 N -0.266 5.266 20 N -0.078 5.078 21 H 0.089 0.911 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.168 0.832 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.033 0.967 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -4.872 1.908 -25.509 26.040 hybrid contribution -1.636 2.335 1.276 3.123 sum -6.508 4.243 -24.234 25.449 Atomic orbital electron populations 1.22509 0.95483 1.02960 1.02868 1.19958 0.92678 0.96278 0.86125 0.88271 1.60426 1.57211 1.09873 1.03222 1.22217 0.99127 0.95439 0.90346 1.21440 1.01045 0.98610 0.92692 1.19539 0.96109 0.95488 0.93876 1.21167 1.43444 0.98340 0.92701 0.90997 1.25052 0.94756 0.98085 0.95747 1.69921 1.46997 1.36589 1.00897 0.86761 0.78450 0.85971 0.77977 1.20388 1.21433 1.19054 1.22418 1.00716 0.89790 0.96783 1.28037 1.11024 1.08552 0.97851 1.81400 1.46653 0.95877 1.22715 1.79031 1.21556 1.25438 1.00562 1.71184 1.10840 1.11296 1.14448 0.91102 0.91964 0.91880 0.83164 0.91449 0.95484 0.92895 0.91861 0.96657 0.97287 0.92797 0.78775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 9.14 37.16 0.34 -1.33 16 2 C 0.16 1.85 2.97 -68.86 -0.20 1.64 16 3 H 0.10 1.00 7.80 -51.93 -0.40 0.60 16 4 N -0.68 -9.68 5.99 -107.95 -0.65 -10.33 16 5 C 0.06 0.90 5.48 -3.82 -0.02 0.88 16 6 C -0.10 -2.01 5.41 -26.73 -0.14 -2.15 16 7 C -0.01 -0.29 4.04 -27.88 -0.11 -0.41 16 8 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 9 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 10 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 11 N -0.90 -28.42 13.96 55.43 0.77 -27.64 16 12 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 16 C 0.05 0.57 5.93 -83.66 -0.50 0.07 16 17 C -0.30 -2.49 11.36 29.70 0.34 -2.16 16 18 S 0.40 3.34 23.40 -107.50 -2.52 0.83 16 19 N -0.29 -3.75 12.54 60.35 0.76 -3.00 16 20 N -0.21 -3.00 11.34 32.45 0.37 -2.63 16 21 H 0.07 0.67 7.45 -51.93 -0.39 0.28 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 24 H 0.35 4.98 8.47 -39.29 -0.33 4.65 16 25 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 26 H 0.03 0.40 7.44 -51.93 -0.39 0.01 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 30 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 32 H 0.20 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 285.82 15.07 4.31 4.31 Total: -1.00 -33.05 285.82 -6.75 -39.80 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.40 Total: -1.50 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -0.73 Total: -17.08 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 1.25 Total: -43.60 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -2.52 Total: 0.83 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.05 -6.75 -39.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398264905.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.232 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds