Wall clock time and date at job start Mon Mar 30 2020 03:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47613 * 2 1 4 4 N 1.46904 * 109.47409 * 120.00357 * 2 1 3 5 5 C 1.46907 * 110.99837 * 275.00130 * 4 2 1 6 6 C 1.52997 * 109.47140 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47184 * 179.97438 * 6 5 4 8 8 C 1.50693 * 109.47024 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00391 * 359.97438 * 8 7 6 10 10 C 1.37885 * 119.99949 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00124 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99545 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46843 * 90.00817 * 12 10 8 14 14 H 1.48506 * 109.46995 * 210.00227 * 12 10 8 15 15 H 1.48493 * 109.47271 * 330.00259 * 12 10 8 16 16 C 1.50700 * 109.47095 * 239.99859 * 2 1 3 17 17 C 1.35347 * 123.76719 * 85.00163 * 16 2 1 18 18 S 1.72111 * 104.15669 * 180.02562 * 17 16 2 19 19 N 1.56517 * 95.88258 * 0.02562 * 18 17 16 20 20 N 1.27570 * 109.22531 * 359.97438 * 19 18 17 21 21 H 1.09001 * 109.46621 * 299.99856 * 1 2 3 22 22 H 1.09003 * 109.46840 * 59.99982 * 1 2 3 23 23 H 1.08998 * 109.46904 * 179.97438 * 1 2 3 24 24 H 1.00904 * 111.00058 * 38.94480 * 4 2 1 25 25 H 1.09004 * 109.46611 * 299.99551 * 5 4 2 26 26 H 1.09001 * 109.47316 * 59.99618 * 5 4 2 27 27 H 1.08991 * 109.47387 * 300.00281 * 6 5 4 28 28 H 1.09001 * 109.46835 * 59.99928 * 6 5 4 29 29 H 1.09004 * 109.46921 * 300.00372 * 7 6 5 30 30 H 1.08995 * 109.46488 * 59.99891 * 7 6 5 31 31 H 0.96996 * 119.99886 * 179.97438 * 11 10 8 32 32 H 1.08001 * 127.91945 * 0.04078 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5951 -0.5333 3.5745 7 6 2.6611 0.4199 4.7695 8 6 3.1666 -0.3244 5.9783 9 1 3.4155 -1.3725 5.9021 10 6 3.3104 0.3326 7.1821 11 7 3.7511 -0.3171 8.2372 12 14 2.8792 2.1453 7.3140 13 1 1.4498 2.2879 7.6905 14 1 3.7301 2.7823 8.3511 15 1 3.1149 2.8067 6.0056 16 6 2.0323 -0.7104 -1.2304 17 6 2.1906 -0.1107 -2.4334 18 16 2.7778 -1.3652 -3.4551 19 7 2.7780 -2.4800 -2.3565 20 7 2.3655 -1.9848 -1.2555 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.4495 -1.4980 1.4101 25 1 2.7589 1.0461 2.1182 26 1 1.0871 0.6162 2.5526 27 1 1.9186 -1.3566 3.8029 28 1 3.5905 -0.9273 3.3690 29 1 3.3380 1.2431 4.5406 30 1 1.6660 0.8143 4.9749 31 1 3.8526 0.1452 9.0839 32 1 1.9939 0.9191 -2.6927 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398264905.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:16 Heat of formation + Delta-G solvation = 33.799526 kcal Electronic energy + Delta-G solvation = -14521.283078 eV Core-core repulsion = 12029.021343 eV Total energy + Delta-G solvation = -2492.261735 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.86740 -38.31747 -35.87890 -34.21329 -32.55926 -30.36196 -28.16123 -27.58473 -24.73190 -23.41131 -22.11244 -21.61923 -19.11360 -18.88105 -17.09071 -16.59103 -16.47520 -16.27279 -15.65625 -15.59323 -14.76747 -14.71524 -13.88148 -13.76568 -13.61450 -13.23946 -12.98449 -12.71128 -12.56916 -12.42675 -12.32386 -11.78847 -11.48803 -11.47485 -11.25551 -10.95848 -10.76372 -10.75015 -10.53448 -9.31197 -8.28053 -6.32945 -0.63047 0.30309 0.83641 1.33078 1.37221 1.40338 1.52613 2.38331 3.07097 3.08504 3.24901 3.92956 4.07446 4.19265 4.24146 4.31934 4.41163 4.56669 4.70956 4.76859 4.89175 4.98421 5.01816 5.13215 5.21610 5.54106 5.63270 5.68268 6.10333 6.31131 6.43928 6.75889 6.95736 7.31574 8.89378 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.051442 B = 0.003893 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.168954 B = 7190.070227 C = 7431.582612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.165 3.835 3 H 0.116 0.884 4 N -0.692 5.692 5 C 0.073 3.927 6 C -0.093 4.093 7 C -0.008 4.008 8 C -0.537 4.537 9 H 0.024 0.976 10 C -0.002 4.002 11 N -0.956 5.956 12 Si 0.959 3.041 13 H -0.264 1.264 14 H -0.285 1.285 15 H -0.241 1.241 16 C 0.024 3.976 17 C -0.280 4.280 18 S 0.471 5.529 19 N -0.345 5.345 20 N -0.257 5.257 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.049 0.951 24 H 0.345 0.655 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.266 0.734 32 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 6.711 -27.167 28.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.051 3.949 3 H 0.134 0.866 4 N -0.323 5.323 5 C -0.056 4.056 6 C -0.131 4.131 7 C -0.046 4.046 8 C -0.575 4.575 9 H 0.042 0.958 10 C -0.198 4.198 11 N -0.597 5.597 12 Si 0.781 3.219 13 H -0.189 1.189 14 H -0.211 1.211 15 H -0.165 1.165 16 C -0.123 4.123 17 C -0.437 4.437 18 S 0.606 5.394 19 N -0.324 5.324 20 N -0.123 5.123 21 H 0.090 0.910 22 H 0.104 0.896 23 H 0.068 0.932 24 H 0.164 0.836 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -6.029 5.084 -27.893 28.986 hybrid contribution -1.222 1.260 1.891 2.580 sum -7.252 6.344 -26.002 27.730 Atomic orbital electron populations 1.22434 0.94095 1.02505 1.04035 1.20082 0.93793 0.96542 0.84475 0.86593 1.60330 1.58233 1.09925 1.03777 1.21930 0.99824 0.94909 0.88905 1.21272 0.99981 0.98106 0.93754 1.19475 0.96392 0.95734 0.92984 1.21557 1.43703 0.96900 0.95309 0.95766 1.26150 0.94430 1.04194 0.95031 1.70095 1.48565 1.39214 1.01788 0.85535 0.78693 0.78570 0.79078 1.18914 1.21106 1.16465 1.22559 1.02121 0.89574 0.98044 1.28533 1.08384 1.10193 0.96542 1.81050 1.44114 0.94080 1.20131 1.78698 1.23833 1.28220 1.01654 1.71196 1.12327 1.12964 1.15767 0.91010 0.89611 0.93169 0.83624 0.90655 0.93824 0.93845 0.94038 0.95904 0.95844 0.92517 0.74829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 9.14 71.98 0.66 -2.11 16 2 C 0.16 3.32 2.97 44.17 0.13 3.45 16 3 H 0.12 1.91 7.80 -2.39 -0.02 1.89 16 4 N -0.69 -19.16 5.99 -495.43 -2.97 -22.13 16 5 C 0.07 2.17 5.48 86.30 0.47 2.65 16 6 C -0.09 -3.76 5.41 30.59 0.17 -3.59 16 7 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 8 C -0.54 -32.14 9.66 25.60 0.25 -31.90 16 9 H 0.02 1.61 7.99 -2.91 -0.02 1.59 16 10 C 0.00 -0.12 5.47 84.66 0.46 0.34 16 11 N -0.96 -61.70 13.96 21.45 0.30 -61.40 16 12 Si 0.96 44.50 27.47 68.60 1.88 46.39 16 13 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 14 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 15 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 16 C 0.02 0.50 5.93 41.90 0.25 0.75 16 17 C -0.28 -3.69 11.36 67.15 0.76 -2.93 16 18 S 0.47 6.81 23.40 -56.49 -1.32 5.49 16 19 N -0.35 -8.92 12.54 37.02 0.46 -8.46 16 20 N -0.26 -7.27 11.34 -51.24 -0.58 -7.85 16 21 H 0.07 1.15 7.45 -2.39 -0.02 1.13 16 22 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 24 H 0.34 9.90 8.47 -89.69 -0.76 9.14 16 25 H 0.08 2.14 8.06 -2.39 -0.02 2.12 16 26 H 0.04 1.16 7.44 -2.39 -0.02 1.15 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.02 1.04 7.20 -2.39 -0.02 1.03 16 30 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 31 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 32 H 0.24 0.99 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -75.08 285.82 1.35 -73.73 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.30 Total: 7.83 kcal Atomic # 6 Polarization: -36.86 SS G_CDS: 3.27 Total: -33.59 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -2.78 Total: -99.84 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal Atomic # 16 Polarization: 6.81 SS G_CDS: -1.32 Total: 5.49 kcal Total: -75.08 1.35 -73.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398264905.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.530 kcal (2) G-P(sol) polarization free energy of solvation -75.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds