Wall clock time and date at job start Mon Mar 30 2020 03:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47126 * 2 1 4 4 N 1.46899 * 109.47161 * 239.99710 * 2 1 3 5 5 C 1.46900 * 110.99919 * 85.00052 * 4 2 1 6 6 C 1.53002 * 109.47324 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47098 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.46543 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00788 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99474 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00039 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99611 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47259 * 90.00421 * 12 10 8 14 14 H 1.48508 * 109.46884 * 210.00094 * 12 10 8 15 15 H 1.48496 * 109.47427 * 329.99929 * 12 10 8 16 16 C 1.50702 * 109.46941 * 119.99849 * 2 1 3 17 17 C 1.35346 * 123.76855 * 274.99767 * 16 2 1 18 18 S 1.72116 * 104.15378 * 180.02562 * 17 16 2 19 19 N 1.56507 * 95.88593 * 0.02562 * 18 17 16 20 20 N 1.27574 * 109.22219 * 359.97438 * 19 18 17 21 21 H 1.08996 * 109.47126 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47475 * 300.00362 * 1 2 3 23 23 H 1.09000 * 109.46781 * 60.00217 * 1 2 3 24 24 H 1.00891 * 111.00300 * 321.04965 * 4 2 1 25 25 H 1.08994 * 109.47284 * 300.00340 * 5 4 2 26 26 H 1.09011 * 109.46873 * 60.00132 * 5 4 2 27 27 H 1.09000 * 109.47100 * 300.00791 * 6 5 4 28 28 H 1.08996 * 109.46636 * 59.99908 * 6 5 4 29 29 H 1.08998 * 109.46924 * 299.99833 * 7 6 5 30 30 H 1.08997 * 109.47019 * 60.00429 * 7 6 5 31 31 H 0.97004 * 119.99475 * 180.02562 * 11 10 8 32 32 H 1.08000 * 127.92071 * 0.05001 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2225 -2.3469 6 6 2.5962 -0.5330 -3.5742 7 6 2.6622 0.4203 -4.7691 8 6 3.1677 -0.3241 -5.9780 9 1 3.4166 -1.3722 -5.9019 10 6 3.3125 0.3332 -7.1815 11 7 3.0099 1.6097 -7.2741 12 14 3.9397 -0.5893 -8.6798 13 1 2.7911 -1.1713 -9.4195 14 1 4.6753 0.3481 -9.5661 15 1 4.8514 -1.6779 -8.2451 16 6 2.0323 -0.7104 1.2305 17 6 2.1906 -0.1107 2.4335 18 16 2.7791 -1.3648 3.4548 19 7 2.7811 -2.4791 2.3558 20 7 2.3672 -1.9843 1.2552 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.4496 -1.4979 -1.4100 25 1 1.0871 0.6162 -2.5525 26 1 2.7589 1.0462 -2.1182 27 1 3.5917 -0.9264 -3.3682 28 1 1.9202 -1.3568 -3.8029 29 1 1.6669 0.8140 -4.9752 30 1 3.3385 1.2438 -4.5400 31 1 3.1114 2.0719 -8.1209 32 1 1.9926 0.9188 2.6931 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398264906.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:18 Heat of formation + Delta-G solvation = 54.599302 kcal Electronic energy + Delta-G solvation = -14474.573467 eV Core-core repulsion = 11983.213678 eV Total energy + Delta-G solvation = -2491.359789 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.02289 -37.15572 -34.12834 -32.54072 -31.00586 -28.96433 -27.11344 -25.85362 -23.60877 -22.13907 -21.10375 -20.12313 -18.21353 -16.44567 -16.01921 -15.76261 -15.11952 -14.72000 -14.58112 -14.30447 -13.41355 -12.96852 -12.71651 -12.24548 -12.19323 -12.02075 -11.55321 -11.47044 -11.32224 -10.83272 -10.55265 -10.47611 -10.16869 -10.00587 -9.75215 -9.65639 -9.30219 -9.02878 -8.31296 -8.17801 -5.96772 -3.98370 0.13085 0.99501 1.60339 2.18697 3.34976 3.40907 3.45445 3.96487 4.24144 4.50511 4.75392 4.86262 5.01149 5.05794 5.29422 5.39248 5.59047 5.67263 5.82533 5.86357 6.02015 6.33640 6.75117 6.77582 7.17083 7.29320 7.62705 7.72084 7.77783 7.86863 8.03992 8.47777 9.08891 9.65532 11.14721 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.052624 B = 0.003685 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.946306 B = 7596.551934 C = 7878.166144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.164 3.836 3 H 0.100 0.900 4 N -0.677 5.677 5 C 0.059 3.941 6 C -0.107 4.107 7 C 0.022 3.978 8 C -0.518 4.518 9 H 0.055 0.945 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.273 1.273 16 C 0.049 3.951 17 C -0.297 4.297 18 S 0.396 5.604 19 N -0.288 5.288 20 N -0.210 5.210 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.347 0.653 25 H 0.027 0.973 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.421 -1.044 22.233 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.049 3.951 3 H 0.118 0.882 4 N -0.308 5.308 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.015 4.015 8 C -0.556 4.556 9 H 0.074 0.926 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.198 1.198 16 C -0.096 4.096 17 C -0.454 4.454 18 S 0.532 5.468 19 N -0.267 5.267 20 N -0.078 5.078 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.166 0.834 25 H 0.046 0.954 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.113 -2.519 23.000 23.346 hybrid contribution -1.118 1.011 -1.923 2.444 sum -4.231 -1.508 21.077 21.550 Atomic orbital electron populations 1.22507 0.95507 1.02874 1.02906 1.19963 0.92669 0.96315 0.86129 0.88228 1.60449 1.57077 1.09929 1.03346 1.22195 0.99206 0.95351 0.90132 1.21622 1.00256 0.98953 0.93695 1.19065 0.96996 0.94314 0.91148 1.21273 1.43395 0.96426 0.94534 0.92640 1.25028 0.95661 0.94878 0.98970 1.69967 1.49133 1.08961 1.25648 0.86596 0.78970 0.79662 0.82799 1.20708 1.21264 1.19831 1.22442 1.00611 0.89754 0.96827 1.28041 1.10987 1.08535 0.97822 1.81382 1.46724 0.95978 1.22743 1.79027 1.21620 1.25468 1.00576 1.71180 1.10825 1.11353 1.14444 0.91971 0.91998 0.91030 0.83359 0.95446 0.91447 0.92497 0.93519 0.96799 0.96593 0.93080 0.78749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 9.14 37.16 0.34 -1.45 16 2 C 0.16 1.95 2.97 -68.87 -0.20 1.75 16 3 H 0.10 1.09 7.80 -51.93 -0.40 0.68 16 4 N -0.68 -10.18 5.98 -107.95 -0.65 -10.82 16 5 C 0.06 1.01 5.48 -3.82 -0.02 0.99 16 6 C -0.11 -2.26 5.41 -26.73 -0.14 -2.40 16 7 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 8 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 9 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 12 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 C 0.05 0.60 5.93 -83.66 -0.50 0.10 16 17 C -0.30 -2.61 11.36 29.70 0.34 -2.27 16 18 S 0.40 3.44 23.40 -107.50 -2.52 0.93 16 19 N -0.29 -3.84 12.54 60.35 0.76 -3.08 16 20 N -0.21 -3.07 11.34 32.45 0.37 -2.71 16 21 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.73 7.45 -51.93 -0.39 0.35 16 24 H 0.35 5.18 8.47 -39.30 -0.33 4.84 16 25 H 0.03 0.45 7.44 -51.93 -0.39 0.06 16 26 H 0.07 1.15 8.06 -51.92 -0.42 0.73 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 289.41 15.07 4.36 4.36 Total: -1.00 -32.42 289.41 -7.13 -39.54 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -4.43 Total: -2.09 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -0.74 Total: -16.62 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 1.22 Total: -43.14 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -2.52 Total: 0.93 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.42 -7.13 -39.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398264906.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.144 kcal (2) G-P(sol) polarization free energy of solvation -32.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds