Wall clock time and date at job start Mon Mar 30 2020 03:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47126 * 2 1 4 4 N 1.46899 * 109.47161 * 239.99710 * 2 1 3 5 5 C 1.46900 * 110.99919 * 85.00052 * 4 2 1 6 6 C 1.53002 * 109.47324 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47098 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.46543 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00788 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99474 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00039 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99611 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47259 * 90.00421 * 12 10 8 14 14 H 1.48508 * 109.46884 * 210.00094 * 12 10 8 15 15 H 1.48496 * 109.47427 * 329.99929 * 12 10 8 16 16 C 1.50702 * 109.46941 * 119.99849 * 2 1 3 17 17 C 1.35346 * 123.76855 * 274.99767 * 16 2 1 18 18 S 1.72116 * 104.15378 * 180.02562 * 17 16 2 19 19 N 1.56507 * 95.88593 * 0.02562 * 18 17 16 20 20 N 1.27574 * 109.22219 * 359.97438 * 19 18 17 21 21 H 1.08996 * 109.47126 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47475 * 300.00362 * 1 2 3 23 23 H 1.09000 * 109.46781 * 60.00217 * 1 2 3 24 24 H 1.00891 * 111.00300 * 321.04965 * 4 2 1 25 25 H 1.08994 * 109.47284 * 300.00340 * 5 4 2 26 26 H 1.09011 * 109.46873 * 60.00132 * 5 4 2 27 27 H 1.09000 * 109.47100 * 300.00791 * 6 5 4 28 28 H 1.08996 * 109.46636 * 59.99908 * 6 5 4 29 29 H 1.08998 * 109.46924 * 299.99833 * 7 6 5 30 30 H 1.08997 * 109.47019 * 60.00429 * 7 6 5 31 31 H 0.97004 * 119.99475 * 180.02562 * 11 10 8 32 32 H 1.08000 * 127.92071 * 0.05001 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2225 -2.3469 6 6 2.5962 -0.5330 -3.5742 7 6 2.6622 0.4203 -4.7691 8 6 3.1677 -0.3241 -5.9780 9 1 3.4166 -1.3722 -5.9019 10 6 3.3125 0.3332 -7.1815 11 7 3.0099 1.6097 -7.2741 12 14 3.9397 -0.5893 -8.6798 13 1 2.7911 -1.1713 -9.4195 14 1 4.6753 0.3481 -9.5661 15 1 4.8514 -1.6779 -8.2451 16 6 2.0323 -0.7104 1.2305 17 6 2.1906 -0.1107 2.4335 18 16 2.7791 -1.3648 3.4548 19 7 2.7811 -2.4791 2.3558 20 7 2.3672 -1.9843 1.2552 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.4496 -1.4979 -1.4100 25 1 1.0871 0.6162 -2.5525 26 1 2.7589 1.0462 -2.1182 27 1 3.5917 -0.9264 -3.3682 28 1 1.9202 -1.3568 -3.8029 29 1 1.6669 0.8140 -4.9752 30 1 3.3385 1.2438 -4.5400 31 1 3.1114 2.0719 -8.1209 32 1 1.9926 0.9188 2.6931 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398264906.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:17 Heat of formation + Delta-G solvation = 31.556240 kcal Electronic energy + Delta-G solvation = -14475.572689 eV Core-core repulsion = 11983.213678 eV Total energy + Delta-G solvation = -2492.359011 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.86998 -38.31214 -35.88627 -34.15778 -32.37646 -30.19344 -28.07373 -27.48047 -24.90157 -23.59460 -22.16156 -21.63796 -19.08687 -18.49363 -17.07107 -16.59135 -16.55800 -16.35301 -15.66718 -15.58925 -14.72086 -14.42758 -13.84322 -13.67288 -13.56346 -13.14826 -12.98234 -12.69018 -12.62028 -12.47658 -12.32396 -12.17614 -11.54024 -11.36873 -11.10605 -10.96008 -10.76318 -10.54436 -10.53013 -9.33243 -8.19866 -6.30264 -0.63216 0.29736 0.83537 1.32437 1.40008 1.41290 1.52783 2.41442 3.08324 3.13186 3.24090 3.92424 4.06818 4.20382 4.24195 4.31932 4.43910 4.56368 4.74681 4.78429 4.88575 5.03568 5.14000 5.19649 5.25848 5.53228 5.77199 5.87252 6.05907 6.28915 6.44340 6.86243 6.95287 7.38655 8.91916 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.052624 B = 0.003685 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.946306 B = 7596.551934 C = 7878.166144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.164 3.836 3 H 0.112 0.888 4 N -0.687 5.687 5 C 0.075 3.925 6 C -0.094 4.094 7 C 0.027 3.973 8 C -0.545 4.545 9 H 0.055 0.945 10 C 0.000 4.000 11 N -0.932 5.932 12 Si 0.964 3.036 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.266 1.266 16 C 0.024 3.976 17 C -0.281 4.281 18 S 0.475 5.525 19 N -0.344 5.344 20 N -0.255 5.255 21 H 0.052 0.948 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.346 0.654 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.047 0.953 29 H -0.005 1.005 30 H -0.006 1.006 31 H 0.264 0.736 32 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.537 -0.738 23.519 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.050 3.950 3 H 0.130 0.870 4 N -0.318 5.318 5 C -0.053 4.053 6 C -0.132 4.132 7 C -0.011 4.011 8 C -0.583 4.583 9 H 0.074 0.926 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.788 3.212 13 H -0.197 1.197 14 H -0.205 1.205 15 H -0.191 1.191 16 C -0.122 4.122 17 C -0.438 4.438 18 S 0.610 5.390 19 N -0.323 5.323 20 N -0.121 5.121 21 H 0.071 0.929 22 H 0.105 0.895 23 H 0.086 0.914 24 H 0.165 0.835 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.014 0.986 30 H 0.012 0.988 31 H 0.073 0.927 32 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.234 -2.234 24.298 24.614 hybrid contribution -1.071 0.983 -2.163 2.607 sum -4.305 -1.251 22.135 22.584 Atomic orbital electron populations 1.22426 0.94106 1.02594 1.03900 1.20062 0.93822 0.96459 0.84655 0.87043 1.60344 1.58081 1.09807 1.03572 1.21867 0.99250 0.94901 0.89313 1.21378 0.99941 0.98136 0.93767 1.18957 0.95030 0.94419 0.92673 1.21710 1.43861 0.96771 0.95967 0.92639 1.25954 0.95665 0.95791 1.02315 1.70085 1.49893 1.10522 1.26718 0.85468 0.78650 0.78429 0.78633 1.19660 1.20521 1.19077 1.22500 1.02162 0.89641 0.97910 1.28529 1.08425 1.10213 0.96602 1.81025 1.44025 0.93986 1.20010 1.78686 1.23767 1.28185 1.01631 1.71192 1.12303 1.12846 1.15778 0.92883 0.89543 0.91410 0.83542 0.94721 0.91492 0.93614 0.93416 0.98648 0.98802 0.92729 0.74954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.14 71.98 0.66 -2.47 16 2 C 0.16 3.66 2.97 44.17 0.13 3.79 16 3 H 0.11 2.18 7.80 -2.39 -0.02 2.16 16 4 N -0.69 -20.41 5.98 -495.45 -2.96 -23.38 16 5 C 0.08 2.55 5.48 86.30 0.47 3.02 16 6 C -0.09 -4.04 5.41 30.60 0.17 -3.87 16 7 C 0.03 1.44 4.97 29.85 0.15 1.59 16 8 C -0.55 -32.02 9.11 25.60 0.23 -31.78 16 9 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 10 C 0.00 0.03 5.46 84.66 0.46 0.49 16 11 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 12 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 16 C 0.02 0.55 5.93 41.90 0.25 0.80 16 17 C -0.28 -4.03 11.36 67.15 0.76 -3.27 16 18 S 0.47 7.09 23.40 -56.49 -1.32 5.77 16 19 N -0.34 -8.97 12.54 37.02 0.46 -8.51 16 20 N -0.26 -7.37 11.34 -51.25 -0.58 -7.95 16 21 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 22 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.07 1.29 7.45 -2.39 -0.02 1.27 16 24 H 0.35 10.37 8.47 -89.70 -0.76 9.61 16 25 H 0.03 1.12 7.44 -2.39 -0.02 1.10 16 26 H 0.07 2.26 8.06 -2.38 -0.02 2.24 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 32 H 0.23 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -71.28 289.41 1.55 -69.74 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 0.35 Total: 5.75 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 3.28 Total: -31.70 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -2.80 Total: -96.82 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 7.09 SS G_CDS: -1.32 Total: 5.77 kcal Total: -71.28 1.55 -69.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398264906.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.294 kcal (2) G-P(sol) polarization free energy of solvation -71.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds