Wall clock time and date at job start Mon Mar 30 2020 03:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99899 * 2 1 4 4 H 1.48496 * 109.47454 * 240.00616 * 3 2 1 5 5 H 1.48509 * 109.47058 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46884 * 120.00076 * 3 2 1 7 7 C 1.37872 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99725 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47285 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47332 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47332 * 179.97438 * 11 10 9 13 13 N 1.46894 * 109.47327 * 179.97438 * 12 11 10 14 14 C 1.46905 * 111.00296 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47298 * 180.02562 * 14 13 12 16 16 C 1.35337 * 123.76799 * 94.99710 * 15 14 13 17 17 S 1.72118 * 104.15428 * 179.97438 * 16 15 14 18 18 N 1.56515 * 95.88471 * 0.02562 * 17 16 15 19 19 N 1.27573 * 109.22052 * 359.97438 * 18 17 16 20 20 H 0.97003 * 120.00253 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46992 * 60.00965 * 9 7 2 22 22 H 1.08994 * 109.47157 * 300.00742 * 9 7 2 23 23 H 1.09005 * 109.47101 * 60.00215 * 10 9 7 24 24 H 1.09000 * 109.47020 * 300.00577 * 10 9 7 25 25 H 1.09005 * 109.47022 * 59.99958 * 11 10 9 26 26 H 1.09000 * 109.47369 * 300.00155 * 11 10 9 27 27 H 1.09005 * 109.47101 * 60.00007 * 12 11 10 28 28 H 1.09000 * 109.47020 * 300.00369 * 12 11 10 29 29 H 1.00901 * 111.00014 * 303.95760 * 13 12 11 30 30 H 1.08997 * 109.47069 * 60.00189 * 14 13 12 31 31 H 1.09001 * 109.46721 * 300.00117 * 14 13 12 32 32 H 1.07998 * 127.92351 * 359.94507 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 7 1.7402 -7.4221 -0.0018 14 6 2.6647 -8.5638 -0.0018 15 6 1.8767 -9.8484 -0.0025 16 6 1.5673 -10.5405 -1.1235 17 16 0.6770 -11.8967 -0.5486 18 7 0.7574 -11.5110 0.9662 19 7 1.4122 -10.4230 1.0883 20 1 -0.4851 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6247 -2.5570 0.8896 23 1 2.8720 -3.6043 0.8895 24 1 2.8720 -3.6042 -0.8905 25 1 0.8540 -5.0445 -0.8914 26 1 0.8534 -5.0451 0.8885 27 1 3.1014 -6.0927 0.8882 28 1 3.1013 -6.0917 -0.8918 29 1 1.1040 -7.4724 0.7797 30 1 3.2926 -8.5228 0.8882 31 1 3.2927 -8.5227 -0.8918 32 1 1.8205 -10.2973 -2.1449 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398397474.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:08 Heat of formation + Delta-G solvation = 26.276781 kcal Electronic energy + Delta-G solvation = -14014.722088 eV Core-core repulsion = 11522.134143 eV Total energy + Delta-G solvation = -2492.587946 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.89405 -37.98798 -36.05650 -34.39293 -32.91301 -30.15861 -28.08509 -27.04920 -25.21181 -22.86508 -22.19531 -21.67299 -19.30974 -18.41902 -17.29017 -16.84924 -16.55341 -16.50818 -15.76939 -15.41797 -15.06557 -14.44477 -13.97579 -13.78651 -13.54216 -13.07376 -12.94429 -12.81910 -12.60660 -12.30562 -12.16840 -12.07580 -11.35644 -11.30339 -11.10545 -11.08192 -10.83577 -10.68537 -10.54199 -9.46071 -8.19053 -6.30763 -0.69250 0.23048 0.75393 1.15415 1.40151 1.43688 1.51586 2.41677 2.99927 3.13664 3.34613 3.81739 4.05245 4.16159 4.22220 4.46061 4.57163 4.60407 4.70213 4.77747 4.85632 4.94734 5.24968 5.28828 5.37402 5.56397 5.79486 5.87853 5.97383 6.24937 6.27804 6.78576 6.87210 7.38703 8.92739 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.080766 B = 0.002905 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.596476 B = 9636.911661 C = 9749.765727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.096 4.096 11 C -0.107 4.107 12 C 0.072 3.928 13 N -0.692 5.692 14 C 0.144 3.856 15 C 0.010 3.990 16 C -0.264 4.264 17 S 0.488 5.512 18 N -0.341 5.341 19 N -0.274 5.274 20 H 0.263 0.737 21 H -0.011 1.011 22 H -0.014 1.014 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.086 0.914 29 H 0.340 0.660 30 H 0.051 0.949 31 H 0.118 0.882 32 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.255 -24.169 -4.633 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.015 4.015 10 C -0.134 4.134 11 C -0.145 4.145 12 C -0.057 4.057 13 N -0.323 5.323 14 C 0.012 3.988 15 C -0.136 4.136 16 C -0.420 4.420 17 S 0.622 5.378 18 N -0.319 5.319 19 N -0.140 5.140 20 H 0.072 0.928 21 H 0.008 0.992 22 H 0.005 0.995 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.157 0.843 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 4.118 -25.392 -4.203 26.065 hybrid contribution 0.985 2.299 0.500 2.551 sum 5.104 -23.093 -3.703 23.938 Atomic orbital electron populations 1.70102 1.07915 1.27832 1.51766 1.26037 0.95789 1.03541 0.94749 0.85484 0.78255 0.77938 0.79269 1.18953 1.20886 1.19146 1.21741 0.93647 0.92514 1.50459 0.92012 1.19027 0.94568 0.93419 0.94508 1.21393 0.97935 0.93425 1.00696 1.21470 0.98140 0.93545 1.01354 1.21891 0.95230 0.87123 1.01414 1.60549 1.19930 1.01451 1.50371 1.20386 0.91960 0.82938 1.03543 1.22408 1.02821 1.00810 0.87532 1.28596 1.05581 1.01036 1.06822 1.81135 1.36661 1.20502 0.99488 1.78591 1.21523 1.13255 1.18580 1.71204 1.09893 1.03245 1.29705 0.92792 0.99226 0.99523 0.93103 0.92555 0.92454 0.93442 0.94548 0.89589 0.84258 0.93106 0.86413 0.75301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.24 13.29 21.44 0.28 -57.96 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.55 -31.67 9.11 25.60 0.23 -31.44 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.10 -3.93 5.15 30.59 0.16 -3.77 16 11 C -0.11 -3.58 5.47 30.59 0.17 -3.41 16 12 C 0.07 1.82 5.69 86.30 0.49 2.31 16 13 N -0.69 -16.01 6.49 -517.93 -3.36 -19.37 16 14 C 0.14 2.64 6.17 85.56 0.53 3.17 16 15 C 0.01 0.19 6.40 41.90 0.27 0.46 16 16 C -0.26 -3.41 11.34 67.15 0.76 -2.65 16 17 S 0.49 6.32 23.40 -56.49 -1.32 5.00 16 18 N -0.34 -7.81 12.54 37.02 0.46 -7.35 16 19 N -0.27 -6.83 11.68 -51.26 -0.60 -7.43 16 20 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 21 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 22 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 23 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 24 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 26 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.34 8.53 8.72 -89.69 -0.78 7.75 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.12 1.59 8.12 -2.39 -0.02 1.57 16 32 H 0.23 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -70.66 292.25 1.04 -69.62 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 0.33 Total: 4.50 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 3.22 Total: -33.76 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -3.21 Total: -92.10 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 6.32 SS G_CDS: -1.32 Total: 5.00 kcal Total: -70.66 1.04 -69.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398397474.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.900 kcal (2) G-P(sol) polarization free energy of solvation -70.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds