Wall clock time and date at job start Mon Mar 30 2020 03:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46854 * 2 1 4 4 H 1.09002 * 109.46818 * 181.34472 * 3 2 1 5 5 C 1.50699 * 109.47297 * 61.34192 * 3 2 1 6 6 H 1.08001 * 119.99845 * 240.00025 * 5 3 2 7 7 C 1.37877 * 119.99865 * 60.00104 * 5 3 2 8 8 N 1.31514 * 120.00217 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99704 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47730 * 59.99878 * 9 7 5 11 11 H 1.48507 * 109.46952 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47014 * 299.99197 * 9 7 5 13 13 N 1.46899 * 109.47219 * 301.34047 * 3 2 1 14 14 C 1.46893 * 111.00122 * 174.22740 * 13 3 2 15 15 C 1.46901 * 110.99898 * 298.18728 * 13 3 2 16 16 C 1.50693 * 109.47063 * 165.89438 * 15 13 3 17 17 C 1.35350 * 127.92736 * 89.99633 * 16 15 13 18 18 N 1.31746 * 112.46651 * 179.97438 * 17 16 15 19 19 N 1.27575 * 118.27090 * 0.02562 * 18 17 16 20 20 S 1.56510 * 109.22590 * 359.69895 * 19 18 17 21 21 H 1.08994 * 109.47013 * 54.93707 * 1 2 3 22 22 H 1.08999 * 109.46908 * 294.93661 * 1 2 3 23 23 H 1.09002 * 109.46762 * 174.94122 * 1 2 3 24 24 H 1.09004 * 109.47162 * 119.99822 * 2 1 3 25 25 H 1.08995 * 109.46957 * 239.99773 * 2 1 3 26 26 H 0.97001 * 120.00182 * 180.02562 * 8 7 5 27 27 H 1.09006 * 109.47354 * 60.00145 * 14 13 3 28 28 H 1.09001 * 109.47136 * 180.02562 * 14 13 3 29 29 H 1.09003 * 109.47387 * 299.99884 * 14 13 3 30 30 H 1.09008 * 109.46579 * 285.88747 * 15 13 3 31 31 H 1.08997 * 109.47578 * 45.88885 * 15 13 3 32 32 H 1.07999 * 123.76272 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 -0.0241 5 6 1.5650 2.1433 1.2467 6 1 0.9421 3.0221 1.1682 7 6 1.9257 1.6625 2.4876 8 7 2.6838 0.5922 2.5833 9 14 1.3363 2.5308 4.0330 10 1 -0.1483 2.5301 4.0657 11 1 1.8575 1.8211 5.2289 12 1 1.8308 3.9310 4.0333 13 7 1.5240 2.1443 -1.1829 14 6 1.8798 3.5690 -1.1466 15 6 2.0031 1.5133 -2.4200 16 6 1.1985 2.0227 -3.5879 17 6 1.4537 3.0994 -4.3675 18 7 0.5459 3.2667 -5.3076 19 7 -0.4200 2.4356 -5.3696 20 16 -0.2516 1.3645 -4.2409 21 1 -0.3633 0.5903 -0.8411 22 1 -0.3633 0.4333 0.9319 23 1 -0.3633 -1.0237 -0.0906 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 2.9372 0.2537 3.4563 27 1 2.9648 3.6722 -1.1247 28 1 1.4852 4.0648 -2.0336 29 1 1.4531 4.0276 -0.2545 30 1 3.0548 1.7581 -2.5689 31 1 1.8889 0.4320 -2.3441 32 1 2.3066 3.7483 -4.2342 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400146370.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:39 Heat of formation + Delta-G solvation = 75.660609 kcal Electronic energy + Delta-G solvation = -15567.091063 eV Core-core repulsion = 13076.644560 eV Total energy + Delta-G solvation = -2490.446502 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.57499 -37.54757 -33.67534 -31.78411 -30.91857 -28.35389 -26.32950 -25.79026 -23.73888 -22.16078 -20.89356 -19.16305 -18.64896 -16.30056 -15.65440 -15.27211 -15.22102 -14.28903 -13.99582 -13.98120 -13.11560 -12.67271 -12.41673 -11.94996 -11.85708 -11.78483 -11.21299 -11.01878 -10.92569 -10.81900 -10.31661 -10.18622 -9.94661 -9.78219 -9.66930 -9.51809 -9.40617 -8.89859 -8.48831 -7.38238 -6.09528 -4.13753 0.45880 1.34823 1.95189 2.43744 3.26679 3.31849 3.34553 4.33023 4.41103 4.81692 5.06322 5.12863 5.25022 5.76098 5.76997 5.93125 6.02090 6.25811 6.38491 6.50497 6.65492 6.70823 7.01913 7.16728 7.27600 7.52559 7.60357 7.74136 7.92490 7.98605 8.20362 8.43052 8.90285 9.50735 10.96860 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.041358 B = 0.006502 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.852406 B = 4305.551517 C = 4527.217010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.502 4.502 6 H 0.063 0.937 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.529 5.529 14 C 0.034 3.966 15 C 0.121 3.879 16 C -0.214 4.214 17 C -0.018 4.018 18 N -0.246 5.246 19 N -0.311 5.311 20 S 0.430 5.570 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.017 0.983 24 H 0.095 0.905 25 H 0.014 0.986 26 H 0.262 0.738 27 H 0.016 0.984 28 H 0.042 0.958 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 -0.133 -8.927 9.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.152 4.152 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.540 4.540 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.254 5.254 14 C -0.115 4.115 15 C -0.010 4.010 16 C -0.353 4.353 17 C -0.182 4.182 18 N -0.112 5.112 19 N -0.291 5.291 20 S 0.564 5.436 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.036 0.964 24 H 0.113 0.887 25 H 0.032 0.968 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -3.554 -0.613 -9.842 10.482 hybrid contribution 2.038 1.149 1.612 2.841 sum -1.516 0.537 -8.231 8.386 Atomic orbital electron populations 1.21475 0.97139 0.97475 1.01917 1.21627 0.95342 0.98034 1.00198 1.19319 0.92813 0.90941 0.85690 0.98100 1.21017 1.31437 1.12093 0.89482 0.91872 1.24881 0.95076 0.95032 0.98934 1.69850 1.36323 1.22522 1.24332 0.86618 0.79181 0.79601 0.82379 1.20197 1.21342 1.20365 1.62163 1.59791 1.02460 1.00976 1.22284 0.97818 0.89835 1.01528 1.20494 0.93971 1.00065 0.86445 1.27437 1.03136 1.00597 1.04123 1.23666 1.01832 0.99236 0.93505 1.71237 0.99361 1.20066 1.20558 1.78727 1.21143 1.07574 1.21652 1.81479 1.14977 1.29794 1.17306 0.93622 0.92568 0.96361 0.88696 0.96771 0.92828 0.96539 0.93922 0.90180 0.93136 0.88683 0.78856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 9.49 37.16 0.35 -2.13 16 2 C -0.11 -2.47 5.19 -26.73 -0.14 -2.61 16 3 C 0.22 4.94 1.76 -68.86 -0.12 4.82 16 4 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 5 C -0.50 -12.61 6.82 -34.44 -0.23 -12.84 16 6 H 0.06 1.60 6.27 -52.49 -0.33 1.27 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -23.89 11.31 55.43 0.63 -23.27 16 9 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.53 -10.09 3.67 -237.73 -0.87 -10.96 16 14 C 0.03 0.61 9.04 60.06 0.54 1.15 16 15 C 0.12 1.91 5.43 -4.98 -0.03 1.89 16 16 C -0.21 -3.10 5.65 -35.34 -0.20 -3.30 16 17 C -0.02 -0.25 10.28 -18.62 -0.19 -0.44 16 18 N -0.25 -3.93 11.68 29.33 0.34 -3.59 16 19 N -0.31 -4.91 12.54 60.35 0.76 -4.16 16 20 S 0.43 5.87 23.40 -107.50 -2.52 3.35 16 21 H 0.04 0.88 7.41 -51.93 -0.38 0.49 16 22 H 0.06 1.26 7.44 -51.93 -0.39 0.87 16 23 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.09 2.35 6.03 -51.93 -0.31 2.04 16 25 H 0.01 0.27 6.24 -51.93 -0.32 -0.05 16 26 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.04 0.68 6.36 -51.93 -0.33 0.35 16 29 H 0.08 1.57 6.14 -51.93 -0.32 1.25 16 30 H 0.05 0.77 8.08 -51.92 -0.42 0.35 16 31 H 0.10 1.49 5.79 -51.93 -0.30 1.19 16 32 H 0.19 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 272.96 15.07 4.11 4.11 Total: -1.00 -27.03 272.96 -6.61 -33.65 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -3.93 Total: -2.56 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -0.11 Total: -11.95 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.85 Total: -41.97 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 5.87 SS G_CDS: -2.52 Total: 3.35 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.03 -6.61 -33.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400146370.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.307 kcal (2) G-P(sol) polarization free energy of solvation -27.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds