Wall clock time and date at job start Mon Mar 30 2020 03:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46854 * 2 1 4 4 H 1.09002 * 109.46818 * 181.34472 * 3 2 1 5 5 C 1.50699 * 109.47297 * 61.34192 * 3 2 1 6 6 H 1.08001 * 119.99845 * 240.00025 * 5 3 2 7 7 C 1.37877 * 119.99865 * 60.00104 * 5 3 2 8 8 N 1.31514 * 120.00217 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99704 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47730 * 59.99878 * 9 7 5 11 11 H 1.48507 * 109.46952 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47014 * 299.99197 * 9 7 5 13 13 N 1.46899 * 109.47219 * 301.34047 * 3 2 1 14 14 C 1.46893 * 111.00122 * 174.22740 * 13 3 2 15 15 C 1.46901 * 110.99898 * 298.18728 * 13 3 2 16 16 C 1.50693 * 109.47063 * 165.89438 * 15 13 3 17 17 C 1.35350 * 127.92736 * 89.99633 * 16 15 13 18 18 N 1.31746 * 112.46651 * 179.97438 * 17 16 15 19 19 N 1.27575 * 118.27090 * 0.02562 * 18 17 16 20 20 S 1.56510 * 109.22590 * 359.69895 * 19 18 17 21 21 H 1.08994 * 109.47013 * 54.93707 * 1 2 3 22 22 H 1.08999 * 109.46908 * 294.93661 * 1 2 3 23 23 H 1.09002 * 109.46762 * 174.94122 * 1 2 3 24 24 H 1.09004 * 109.47162 * 119.99822 * 2 1 3 25 25 H 1.08995 * 109.46957 * 239.99773 * 2 1 3 26 26 H 0.97001 * 120.00182 * 180.02562 * 8 7 5 27 27 H 1.09006 * 109.47354 * 60.00145 * 14 13 3 28 28 H 1.09001 * 109.47136 * 180.02562 * 14 13 3 29 29 H 1.09003 * 109.47387 * 299.99884 * 14 13 3 30 30 H 1.09008 * 109.46579 * 285.88747 * 15 13 3 31 31 H 1.08997 * 109.47578 * 45.88885 * 15 13 3 32 32 H 1.07999 * 123.76272 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 -0.0241 5 6 1.5650 2.1433 1.2467 6 1 0.9421 3.0221 1.1682 7 6 1.9257 1.6625 2.4876 8 7 2.6838 0.5922 2.5833 9 14 1.3363 2.5308 4.0330 10 1 -0.1483 2.5301 4.0657 11 1 1.8575 1.8211 5.2289 12 1 1.8308 3.9310 4.0333 13 7 1.5240 2.1443 -1.1829 14 6 1.8798 3.5690 -1.1466 15 6 2.0031 1.5133 -2.4200 16 6 1.1985 2.0227 -3.5879 17 6 1.4537 3.0994 -4.3675 18 7 0.5459 3.2667 -5.3076 19 7 -0.4200 2.4356 -5.3696 20 16 -0.2516 1.3645 -4.2409 21 1 -0.3633 0.5903 -0.8411 22 1 -0.3633 0.4333 0.9319 23 1 -0.3633 -1.0237 -0.0906 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 2.9372 0.2537 3.4563 27 1 2.9648 3.6722 -1.1247 28 1 1.4852 4.0648 -2.0336 29 1 1.4531 4.0276 -0.2545 30 1 3.0548 1.7581 -2.5689 31 1 1.8889 0.4320 -2.3441 32 1 2.3066 3.7483 -4.2342 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400146370.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:39 Heat of formation + Delta-G solvation = 59.000873 kcal Electronic energy + Delta-G solvation = -15567.813483 eV Core-core repulsion = 13076.644560 eV Total energy + Delta-G solvation = -2491.168923 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.72767 -39.10908 -35.32534 -33.32755 -32.51786 -29.68965 -28.05529 -27.18763 -25.34056 -23.69520 -22.11632 -20.77877 -19.84176 -18.13265 -17.19388 -16.64762 -16.49395 -15.93032 -15.53859 -15.35793 -14.60245 -14.21020 -13.92469 -13.68914 -13.20629 -13.10394 -12.80168 -12.77419 -12.56681 -12.27740 -12.06905 -11.85625 -11.59674 -11.23575 -11.01434 -10.86416 -10.75217 -10.56542 -10.35881 -8.94889 -8.05993 -6.14719 -0.69347 0.24605 0.82790 1.30741 1.44382 1.46211 1.52096 2.45245 3.22945 3.26948 3.43677 3.89373 3.90394 4.47015 4.56086 4.59412 4.73657 4.77357 4.81207 4.88050 4.98222 5.19231 5.34607 5.47012 5.55642 5.75322 5.82731 5.92340 6.32403 6.38461 6.70623 6.80062 6.97080 7.52784 8.98952 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.041358 B = 0.006502 C = 0.006183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.852406 B = 4305.551517 C = 4527.217010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.111 4.111 3 C 0.225 3.775 4 H -0.031 1.031 5 C -0.507 4.507 6 H 0.057 0.943 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.945 3.055 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.534 5.534 14 C 0.038 3.962 15 C 0.126 3.874 16 C -0.229 4.229 17 C -0.009 4.009 18 N -0.270 5.270 19 N -0.336 5.336 20 S 0.480 5.520 21 H 0.056 0.944 22 H 0.028 0.972 23 H 0.040 0.960 24 H 0.063 0.937 25 H 0.038 0.962 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 -0.009 -9.789 10.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.149 4.149 3 C 0.118 3.882 4 H -0.014 1.014 5 C -0.545 4.545 6 H 0.075 0.925 7 C -0.180 4.180 8 N -0.556 5.556 9 Si 0.772 3.228 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.259 5.259 14 C -0.110 4.110 15 C -0.004 4.004 16 C -0.368 4.368 17 C -0.174 4.174 18 N -0.134 5.134 19 N -0.315 5.315 20 S 0.614 5.386 21 H 0.075 0.925 22 H 0.047 0.953 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.117 -0.475 -10.727 11.500 hybrid contribution 2.200 1.094 1.822 3.059 sum -1.916 0.619 -8.905 9.130 Atomic orbital electron populations 1.21353 0.95857 0.98876 1.00843 1.21503 0.96369 0.97226 0.99804 1.19067 0.90796 0.91775 0.86553 1.01373 1.21282 1.30721 1.11828 0.90710 0.92461 1.25502 0.95442 0.95656 1.01367 1.69974 1.37460 1.23623 1.24540 0.85808 0.78658 0.78725 0.79600 1.20032 1.21383 1.20039 1.62048 1.59855 1.02818 1.01131 1.22231 0.97804 0.89338 1.01654 1.20425 0.94739 0.99996 0.85265 1.27298 1.03892 1.01381 1.04181 1.23992 1.01827 0.99068 0.92510 1.71282 0.99887 1.20732 1.21526 1.78585 1.21639 1.08373 1.22923 1.81280 1.13568 1.28121 1.15605 0.92536 0.95276 0.94090 0.91860 0.94400 0.93123 0.96509 0.91560 0.92214 0.92170 0.88374 0.76706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.36 9.49 71.98 0.68 -3.68 16 2 C -0.11 -4.73 5.19 30.60 0.16 -4.57 16 3 C 0.22 10.13 1.76 44.17 0.08 10.21 16 4 H -0.03 -1.59 8.14 -2.39 -0.02 -1.61 16 5 C -0.51 -25.54 6.82 25.60 0.17 -25.37 16 6 H 0.06 2.91 6.27 -2.91 -0.02 2.89 16 7 C 0.02 1.00 5.30 84.65 0.45 1.45 16 8 N -0.92 -49.76 11.31 21.45 0.24 -49.52 16 9 Si 0.95 41.93 29.54 68.60 2.03 43.95 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 N -0.53 -19.58 3.67 -906.05 -3.33 -22.91 16 14 C 0.04 1.32 9.04 127.69 1.15 2.47 16 15 C 0.13 3.70 5.43 85.55 0.46 4.16 16 16 C -0.23 -6.01 5.65 25.02 0.14 -5.87 16 17 C -0.01 -0.23 10.28 84.04 0.86 0.64 16 18 N -0.27 -8.02 11.68 -61.12 -0.71 -8.73 16 19 N -0.34 -9.89 12.54 37.02 0.46 -9.43 16 20 S 0.48 11.85 23.40 -56.49 -1.32 10.53 16 21 H 0.06 2.05 7.41 -2.39 -0.02 2.03 16 22 H 0.03 1.26 7.44 -2.39 -0.02 1.24 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.06 3.15 6.03 -2.39 -0.01 3.13 16 25 H 0.04 1.41 6.24 -2.39 -0.01 1.39 16 26 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 27 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.07 1.96 6.36 -2.39 -0.02 1.95 16 29 H 0.06 2.30 6.14 -2.39 -0.01 2.29 16 30 H 0.06 1.68 8.08 -2.38 -0.02 1.66 16 31 H 0.10 2.82 5.79 -2.39 -0.01 2.81 16 32 H 0.22 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -57.01 272.96 2.66 -54.34 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.12 Total: 2.31 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 4.17 Total: -20.54 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -3.33 Total: -90.59 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 11.85 SS G_CDS: -1.32 Total: 10.53 kcal Total: -57.01 2.66 -54.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400146370.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.346 kcal (2) G-P(sol) polarization free energy of solvation -57.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds