Wall clock time and date at job start Mon Mar 30 2020 03:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86801 * 120.00028 * 2 1 4 4 H 1.48495 * 109.47420 * 239.99950 * 3 2 1 5 5 H 1.48505 * 109.47398 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47020 * 120.00154 * 3 2 1 7 7 C 1.40048 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00474 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99682 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99810 * 5.00571 * 9 7 2 11 11 N 1.34776 * 119.99861 * 185.00494 * 9 7 2 12 12 C 1.46922 * 120.62898 * 174.75957 * 11 9 7 13 13 C 1.53188 * 108.89394 * 126.34399 * 12 11 9 14 14 C 1.53353 * 109.15114 * 54.57762 * 13 12 11 15 15 C 1.53000 * 109.42066 * 178.67793 * 14 13 12 16 16 C 1.50699 * 109.46880 * 295.12538 * 15 14 13 17 17 O 1.20822 * 120.00364 * 0.02562 * 16 15 14 18 18 O 1.34231 * 119.99707 * 179.97438 * 16 15 14 19 19 C 1.53045 * 109.60341 * 298.71367 * 14 13 12 20 20 C 1.46923 * 120.62970 * 354.78385 * 11 9 7 21 21 H 0.96998 * 119.99786 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.58452 * 246.19948 * 12 11 9 23 23 H 1.08999 * 109.59098 * 6.48559 * 12 11 9 24 24 H 1.09005 * 109.50221 * 174.65750 * 13 12 11 25 25 H 1.09003 * 109.49901 * 294.75362 * 13 12 11 26 26 H 1.08995 * 109.42013 * 58.75064 * 14 13 12 27 27 H 1.08997 * 109.47303 * 55.12604 * 15 14 13 28 28 H 1.08996 * 109.47185 * 175.12588 * 15 14 13 29 29 H 0.96702 * 117.00134 * 180.02562 * 18 16 15 30 30 H 1.09003 * 109.49640 * 301.41957 * 19 14 13 31 31 H 1.09000 * 109.51983 * 181.34048 * 19 14 13 32 32 H 1.08995 * 109.58992 * 353.36984 * 20 11 9 33 33 H 1.08999 * 109.59224 * 113.65741 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6965 -1.2124 5 1 1.2758 2.7465 0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0617 -2.4825 -0.0919 11 7 1.9451 -3.6454 0.1029 12 6 1.2202 -4.9181 0.2196 13 6 1.7187 -5.8744 -0.8684 14 6 3.2432 -6.0041 -0.7642 15 6 3.7443 -6.9838 -1.8273 16 6 3.2030 -8.3599 -1.5370 17 8 2.4894 -8.5388 -0.5786 18 8 3.5129 -9.3869 -2.3440 19 6 3.8913 -4.6355 -0.9861 20 6 3.4142 -3.6668 0.1004 21 1 -0.4850 0.8400 -0.0004 22 1 1.4036 -5.3543 1.2015 23 1 0.1520 -4.7434 0.0910 24 1 1.2570 -6.8524 -0.7326 25 1 1.4538 -5.4795 -1.8492 26 1 3.5086 -6.3753 0.2256 27 1 3.4032 -6.6590 -2.8102 28 1 4.8338 -7.0111 -1.8115 29 1 3.1418 -10.2507 -2.1175 30 1 3.6061 -4.2525 -1.9659 31 1 4.9757 -4.7336 -0.9354 32 1 3.7938 -2.6668 -0.1093 33 1 3.7765 -3.9985 1.0734 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409422349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:31 Heat of formation + Delta-G solvation = -139.673935 kcal Electronic energy + Delta-G solvation = -17566.132930 eV Core-core repulsion = 14591.303199 eV Total energy + Delta-G solvation = -2974.829731 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.45698 -38.50931 -36.47886 -35.75091 -32.96825 -32.41491 -30.50621 -28.77561 -26.22538 -23.79985 -22.58306 -21.31441 -20.09973 -18.83531 -18.09220 -16.74311 -16.27899 -15.98632 -15.63294 -14.43855 -14.22553 -14.11542 -13.79697 -13.52707 -12.93406 -12.68518 -12.32439 -12.18993 -11.72153 -11.50631 -11.35832 -11.14124 -10.93290 -10.85768 -10.67280 -10.51982 -10.31870 -10.21901 -9.91851 -9.69127 -8.83188 -7.54104 -7.15642 -6.17239 -4.62419 2.15771 2.98413 3.16090 3.21132 3.22686 4.10427 4.56821 4.63122 4.77554 4.90985 5.06485 5.38974 5.49487 5.53139 5.73095 5.76722 5.86230 5.95212 6.09993 6.22363 6.30021 6.45105 6.49302 6.54550 6.59631 6.70261 6.86869 7.47212 7.68981 7.82752 8.17108 8.39983 9.04048 9.48758 10.60781 10.79578 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.051609 B = 0.005350 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.409808 B = 5232.841444 C = 5572.528229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.559 3.441 10 O -0.579 6.579 11 N -0.643 5.643 12 C 0.122 3.878 13 C -0.132 4.132 14 C -0.074 4.074 15 C -0.109 4.109 16 C 0.476 3.524 17 O -0.508 6.508 18 O -0.523 6.523 19 C -0.129 4.129 20 C 0.123 3.877 21 H 0.268 0.732 22 H 0.041 0.959 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.406 0.594 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.084 -12.376 -3.799 16.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.365 3.635 10 O -0.462 6.462 11 N -0.381 5.381 12 C -0.002 4.002 13 C -0.171 4.171 14 C -0.093 4.093 15 C -0.147 4.147 16 C 0.318 3.682 17 O -0.395 6.395 18 O -0.336 6.336 19 C -0.167 4.167 20 C -0.001 4.001 21 H 0.079 0.921 22 H 0.059 0.941 23 H 0.101 0.899 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.265 0.735 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.174 -11.906 -3.674 15.473 hybrid contribution 0.342 0.079 0.114 0.369 sum 9.516 -11.827 -3.560 15.592 Atomic orbital electron populations 1.70009 1.07076 1.27348 1.35316 1.25729 0.94595 1.00261 0.92612 0.86464 0.79857 0.81181 0.79424 1.19269 1.20581 1.19273 1.20955 0.93520 0.89321 1.54447 0.90966 1.18240 0.86907 0.82273 0.76064 1.90586 1.14453 1.86185 1.54960 1.48183 1.04616 1.05947 1.79392 1.21074 0.98466 0.84755 0.95885 1.22153 0.94292 1.00286 1.00324 1.21071 0.96680 0.93833 0.97683 1.21555 1.02593 0.87531 1.03003 1.23738 0.77634 0.87315 0.79490 1.90716 1.35074 1.84742 1.28981 1.84561 1.71706 1.21348 1.55937 1.22016 0.99045 0.94558 1.01124 1.21371 0.82783 0.99996 0.95979 0.92071 0.94074 0.89947 0.90707 0.92286 0.90477 0.87700 0.87836 0.73539 0.91434 0.91740 0.88850 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.17 11.84 55.55 0.66 -22.51 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.00 29.56 -169.99 -5.02 14.97 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 7 C -0.55 -15.31 8.86 -35.63 -0.32 -15.62 16 8 H 0.07 1.82 5.69 -52.49 -0.30 1.53 16 9 C 0.56 16.14 7.62 -12.99 -0.10 16.04 16 10 O -0.58 -19.06 14.45 5.20 0.08 -18.99 16 11 N -0.64 -14.89 2.97 -174.44 -0.52 -15.41 16 12 C 0.12 2.54 6.43 -3.71 -0.02 2.51 16 13 C -0.13 -2.22 5.13 -26.45 -0.14 -2.36 16 14 C -0.07 -1.03 1.80 -90.41 -0.16 -1.19 16 15 C -0.11 -1.16 5.29 -27.88 -0.15 -1.30 16 16 C 0.48 5.49 8.04 36.01 0.29 5.78 16 17 O -0.51 -7.53 14.72 -18.75 -0.28 -7.80 16 18 O -0.52 -4.63 13.42 -39.26 -0.53 -5.16 16 19 C -0.13 -1.84 5.36 -26.61 -0.14 -1.99 16 20 C 0.12 2.27 6.31 -3.71 -0.02 2.24 16 21 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.08 1.93 6.99 -51.93 -0.36 1.56 16 24 H 0.07 1.24 5.95 -51.93 -0.31 0.93 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.08 1.11 7.96 -51.93 -0.41 0.70 16 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.41 1.95 9.10 45.56 0.41 2.37 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.79 5.37 -51.93 -0.28 1.51 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 274.98 15.07 4.14 4.14 Total: -1.00 -36.12 274.98 -5.67 -41.79 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.34 Total: 2.50 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -0.86 Total: 6.47 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.14 Total: -37.92 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.73 Total: -31.95 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -36.12 -5.67 -41.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409422349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.888 kcal (2) G-P(sol) polarization free energy of solvation -36.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds