Wall clock time and date at job start Mon Mar 30 2020 03:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86801 * 120.00028 * 2 1 4 4 H 1.48495 * 109.47420 * 239.99950 * 3 2 1 5 5 H 1.48505 * 109.47398 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47020 * 120.00154 * 3 2 1 7 7 C 1.40048 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00474 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99682 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99810 * 5.00571 * 9 7 2 11 11 N 1.34776 * 119.99861 * 185.00494 * 9 7 2 12 12 C 1.46922 * 120.62898 * 174.75957 * 11 9 7 13 13 C 1.53188 * 108.89394 * 126.34399 * 12 11 9 14 14 C 1.53353 * 109.15114 * 54.57762 * 13 12 11 15 15 C 1.53000 * 109.42066 * 178.67793 * 14 13 12 16 16 C 1.50699 * 109.46880 * 295.12538 * 15 14 13 17 17 O 1.20822 * 120.00364 * 0.02562 * 16 15 14 18 18 O 1.34231 * 119.99707 * 179.97438 * 16 15 14 19 19 C 1.53045 * 109.60341 * 298.71367 * 14 13 12 20 20 C 1.46923 * 120.62970 * 354.78385 * 11 9 7 21 21 H 0.96998 * 119.99786 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.58452 * 246.19948 * 12 11 9 23 23 H 1.08999 * 109.59098 * 6.48559 * 12 11 9 24 24 H 1.09005 * 109.50221 * 174.65750 * 13 12 11 25 25 H 1.09003 * 109.49901 * 294.75362 * 13 12 11 26 26 H 1.08995 * 109.42013 * 58.75064 * 14 13 12 27 27 H 1.08997 * 109.47303 * 55.12604 * 15 14 13 28 28 H 1.08996 * 109.47185 * 175.12588 * 15 14 13 29 29 H 0.96702 * 117.00134 * 180.02562 * 18 16 15 30 30 H 1.09003 * 109.49640 * 301.41957 * 19 14 13 31 31 H 1.09000 * 109.51983 * 181.34048 * 19 14 13 32 32 H 1.08995 * 109.58992 * 353.36984 * 20 11 9 33 33 H 1.08999 * 109.59224 * 113.65741 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6965 -1.2124 5 1 1.2758 2.7465 0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0617 -2.4825 -0.0919 11 7 1.9451 -3.6454 0.1029 12 6 1.2202 -4.9181 0.2196 13 6 1.7187 -5.8744 -0.8684 14 6 3.2432 -6.0041 -0.7642 15 6 3.7443 -6.9838 -1.8273 16 6 3.2030 -8.3599 -1.5370 17 8 2.4894 -8.5388 -0.5786 18 8 3.5129 -9.3869 -2.3440 19 6 3.8913 -4.6355 -0.9861 20 6 3.4142 -3.6668 0.1004 21 1 -0.4850 0.8400 -0.0004 22 1 1.4036 -5.3543 1.2015 23 1 0.1520 -4.7434 0.0910 24 1 1.2570 -6.8524 -0.7326 25 1 1.4538 -5.4795 -1.8492 26 1 3.5086 -6.3753 0.2256 27 1 3.4032 -6.6590 -2.8102 28 1 4.8338 -7.0111 -1.8115 29 1 3.1418 -10.2507 -2.1175 30 1 3.6061 -4.2525 -1.9659 31 1 4.9757 -4.7336 -0.9354 32 1 3.7938 -2.6668 -0.1093 33 1 3.7765 -3.9985 1.0734 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409422349.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:30 Heat of formation + Delta-G solvation = -166.844252 kcal Electronic energy + Delta-G solvation = -17567.311124 eV Core-core repulsion = 14591.303199 eV Total energy + Delta-G solvation = -2976.007924 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.39598 -40.13297 -37.95881 -36.93169 -34.74627 -34.33578 -32.02031 -30.08386 -28.23074 -25.19904 -24.10443 -22.54214 -21.47474 -20.44578 -18.97833 -18.42888 -17.71545 -17.34241 -16.89340 -16.28190 -15.92761 -15.46598 -15.23450 -14.76595 -14.30271 -14.26539 -13.75716 -13.64565 -13.29214 -12.95560 -12.74492 -12.62696 -12.59551 -12.31985 -12.13960 -11.95370 -11.81297 -11.66707 -11.30150 -11.09804 -10.89757 -9.75795 -9.05556 -8.26932 -6.82178 1.30558 1.41423 1.45314 1.56803 2.23668 2.25848 2.48150 2.89755 3.57240 3.77146 3.82994 3.98622 4.31250 4.32635 4.43475 4.61129 4.63482 4.68939 4.77139 4.93463 4.99288 5.11849 5.12930 5.16005 5.20418 5.41881 5.53085 5.73190 5.81651 6.17890 6.43599 6.89490 7.08425 7.46965 8.49243 8.69664 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.051609 B = 0.005350 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.409808 B = 5232.841444 C = 5572.528229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.027 3.973 3 Si 0.998 3.002 4 H -0.251 1.251 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.569 4.569 8 H 0.098 0.902 9 C 0.538 3.462 10 O -0.638 6.638 11 N -0.646 5.646 12 C 0.119 3.881 13 C -0.120 4.120 14 C -0.068 4.068 15 C -0.104 4.104 16 C 0.481 3.519 17 O -0.549 6.549 18 O -0.515 6.515 19 C -0.118 4.118 20 C 0.113 3.887 21 H 0.273 0.727 22 H 0.050 0.950 23 H 0.042 0.958 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.141 0.859 29 H 0.425 0.575 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.617 -12.665 -4.576 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.188 4.188 3 Si 0.817 3.183 4 H -0.175 1.175 5 H -0.203 1.203 6 H -0.176 1.176 7 C -0.605 4.605 8 H 0.116 0.884 9 C 0.344 3.656 10 O -0.526 6.526 11 N -0.382 5.382 12 C -0.005 4.005 13 C -0.159 4.159 14 C -0.087 4.087 15 C -0.141 4.141 16 C 0.325 3.675 17 O -0.440 6.440 18 O -0.329 6.329 19 C -0.156 4.156 20 C -0.010 4.010 21 H 0.083 0.917 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.135 0.865 28 H 0.158 0.842 29 H 0.286 0.714 30 H 0.078 0.922 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.776 -12.272 -4.467 18.270 hybrid contribution -0.770 0.035 0.373 0.856 sum 12.006 -12.237 -4.095 17.626 Atomic orbital electron populations 1.70208 1.09731 1.28909 1.36743 1.27055 0.95476 1.05117 0.91158 0.85072 0.78190 0.74572 0.80470 1.17465 1.20254 1.17643 1.21508 0.94923 0.89603 1.54449 0.88421 1.18749 0.86571 0.84379 0.75912 1.90531 1.16917 1.87524 1.57608 1.48091 1.06900 1.05144 1.78076 1.21151 0.96323 0.84915 0.98063 1.22024 0.97242 0.98772 0.97815 1.20961 0.93772 0.94766 0.99180 1.21496 1.04648 0.85986 1.01935 1.23879 0.76678 0.88107 0.78839 1.90717 1.36998 1.85437 1.30818 1.84510 1.71322 1.22071 1.54975 1.21939 1.01654 0.93231 0.98781 1.21679 0.79541 1.01121 0.98642 0.91715 0.93154 0.93980 0.90421 0.93414 0.90525 0.86485 0.84158 0.71411 0.92172 0.87129 0.89718 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -51.63 11.84 21.84 0.26 -51.37 16 2 C 0.03 1.49 5.50 85.30 0.47 1.96 16 3 Si 1.00 40.78 29.56 68.60 2.03 42.81 16 4 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 7 C -0.57 -32.32 8.86 24.83 0.22 -32.10 16 8 H 0.10 4.85 5.69 -2.91 -0.02 4.84 16 9 C 0.54 32.30 7.62 86.36 0.66 32.96 16 10 O -0.64 -44.65 14.45 -4.31 -0.06 -44.71 16 11 N -0.65 -30.55 2.97 -824.02 -2.45 -33.00 16 12 C 0.12 5.15 6.43 86.36 0.56 5.70 16 13 C -0.12 -4.03 5.13 30.78 0.16 -3.87 16 14 C -0.07 -1.71 1.80 -10.66 -0.02 -1.73 16 15 C -0.10 -1.78 5.29 29.85 0.16 -1.62 16 16 C 0.48 9.73 8.04 71.24 0.57 10.31 16 17 O -0.55 -15.42 14.72 21.98 0.32 -15.10 16 18 O -0.52 -7.42 13.42 -51.42 -0.69 -8.11 16 19 C -0.12 -2.99 5.36 30.67 0.16 -2.82 16 20 C 0.11 3.98 6.31 86.36 0.55 4.52 16 21 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 22 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.04 2.12 6.99 -2.39 -0.02 2.10 16 24 H 0.08 2.58 5.95 -2.38 -0.01 2.57 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 1.98 7.96 -2.39 -0.02 1.96 16 27 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.42 2.86 9.10 -74.06 -0.67 2.19 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.08 3.11 5.37 -2.39 -0.01 3.10 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -83.84 274.98 3.35 -80.49 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.46 Total: 15.68 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 3.48 Total: 13.31 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -2.19 Total: -84.37 kcal Atomic # 8 Polarization: -67.49 SS G_CDS: -0.43 Total: -67.92 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -83.84 3.35 -80.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409422349.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.355 kcal (2) G-P(sol) polarization free energy of solvation -83.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds