Wall clock time and date at job start Mon Mar 30 2020 03:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47350 * 2 1 4 4 C 1.50706 * 109.46806 * 119.99484 * 2 1 3 5 5 H 1.08002 * 119.99729 * 117.96269 * 4 2 1 6 6 C 1.37871 * 120.00241 * 297.96867 * 4 2 1 7 7 N 1.31517 * 119.99953 * 353.01696 * 6 4 2 8 8 Si 1.86794 * 120.00136 * 173.01467 * 6 4 2 9 9 H 1.48505 * 109.47522 * 265.17781 * 8 6 4 10 10 H 1.48501 * 109.47296 * 25.18016 * 8 6 4 11 11 H 1.48504 * 109.47244 * 145.17587 * 8 6 4 12 12 C 1.50700 * 109.47092 * 239.99393 * 2 1 3 13 13 O 1.21275 * 120.00231 * 266.21612 * 12 2 1 14 14 N 1.34782 * 119.99763 * 86.21866 * 12 2 1 15 15 C 1.47554 * 125.71725 * 4.07821 * 14 12 2 16 16 C 1.56222 * 105.80405 * 176.35349 * 15 14 12 17 17 H 1.09001 * 117.64667 * 160.51083 * 16 15 14 18 18 C 1.57663 * 98.45465 * 33.35604 * 16 15 14 19 19 C 1.48625 * 125.71823 * 184.38262 * 14 12 2 20 20 H 1.09006 * 113.89099 * 29.02423 * 19 14 12 21 21 C 1.55791 * 106.48930 * 262.85983 * 19 14 12 22 22 S 1.85024 * 104.09539 * 291.74841 * 16 15 14 23 23 H 1.09000 * 109.47302 * 306.18172 * 1 2 3 24 24 H 1.09003 * 109.46963 * 66.18030 * 1 2 3 25 25 H 1.08994 * 109.47372 * 186.17958 * 1 2 3 26 26 H 0.96996 * 120.00090 * 179.97438 * 7 6 4 27 27 H 1.08997 * 110.17626 * 295.57581 * 15 14 12 28 28 H 1.09000 * 110.18022 * 57.39851 * 15 14 12 29 29 H 1.09007 * 111.56919 * 193.88213 * 18 16 15 30 30 H 1.08997 * 111.57062 * 68.56977 * 18 16 15 31 31 H 1.08998 * 110.75929 * 48.35592 * 21 19 14 32 32 H 1.09004 * 110.75813 * 171.73159 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6258 -1.6073 1.1319 6 6 1.7341 -0.2153 2.4823 7 7 1.1310 0.9471 2.6032 8 14 2.1867 -1.1956 4.0066 9 1 1.0213 -2.0097 4.4359 10 1 3.3297 -2.0919 3.6974 11 1 2.5693 -0.2645 5.0985 12 6 2.0324 -0.7105 -1.2304 13 8 2.2998 -1.8924 -1.1814 14 7 2.1844 -0.0325 -2.3853 15 6 1.9796 1.4176 -2.5662 16 6 2.3706 1.7209 -4.0480 17 1 1.9973 2.6443 -4.4907 18 6 1.8993 0.3624 -4.6947 19 6 2.5802 -0.6210 -3.6913 20 1 2.2783 -1.6609 -3.8167 21 6 4.1148 -0.3925 -3.8324 22 16 4.1998 1.4470 -4.0965 23 1 -0.3634 0.6067 0.8295 24 1 -0.3633 0.4150 -0.9402 25 1 -0.3634 -1.0216 0.1106 26 1 0.9208 1.2953 3.4838 27 1 0.9350 1.6745 -2.3904 28 1 2.6242 1.9759 -1.8873 29 1 2.2928 0.2414 -5.7041 30 1 0.8138 0.2654 -4.6769 31 1 4.6356 -0.6952 -2.9239 32 1 4.5067 -0.9248 -4.6992 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597761042.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:49 Heat of formation + Delta-G solvation = -20.694132 kcal Electronic energy + Delta-G solvation = -15805.850936 eV Core-core repulsion = 13278.933427 eV Total energy + Delta-G solvation = -2526.917509 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.81436 -37.20370 -33.75983 -31.66573 -30.37985 -29.99520 -26.09744 -25.18236 -23.50429 -21.75496 -20.58016 -18.72210 -16.82754 -16.49582 -15.92632 -15.19363 -14.93892 -14.44223 -13.85344 -13.34357 -13.20686 -13.10724 -12.50349 -12.34975 -11.91603 -11.68479 -11.52750 -11.32995 -11.23935 -10.99430 -10.82823 -10.64706 -10.31336 -10.03436 -9.92647 -9.04478 -8.63757 -8.37782 -8.21596 -7.62967 -6.07803 -4.08134 1.75051 2.29719 3.32436 3.35565 3.39154 3.47356 3.60439 4.13744 4.40300 4.46639 4.70316 4.75461 5.21767 5.27583 5.39097 5.53614 5.53774 5.63292 5.75881 5.85597 5.94772 6.02454 6.57235 6.69614 6.80042 6.91702 7.42003 7.65445 7.93573 8.01886 8.33138 8.97179 9.11205 9.55907 11.02078 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.039111 B = 0.006793 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.736951 B = 4120.747096 C = 4189.766457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.035 3.965 3 H 0.050 0.950 4 C -0.504 4.504 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.287 1.287 12 C 0.542 3.458 13 O -0.543 6.543 14 N -0.632 5.632 15 C 0.114 3.886 16 C -0.048 4.048 17 H 0.149 0.851 18 C -0.137 4.137 19 C 0.119 3.881 20 H 0.120 0.880 21 C -0.064 4.064 22 S -0.311 6.311 23 H 0.081 0.919 24 H 0.013 0.987 25 H 0.037 0.963 26 H 0.261 0.739 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 2.512 -14.129 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.014 3.986 3 H 0.068 0.932 4 C -0.542 4.542 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.213 1.213 12 C 0.334 3.666 13 O -0.419 6.419 14 N -0.370 5.370 15 C -0.011 4.011 16 C -0.177 4.177 17 H 0.166 0.834 18 C -0.177 4.177 19 C 0.014 3.986 20 H 0.138 0.862 21 C -0.213 4.213 22 S -0.086 6.086 23 H 0.100 0.900 24 H 0.032 0.968 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.241 2.699 -13.988 14.299 hybrid contribution -0.632 -1.092 0.988 1.602 sum 0.609 1.607 -13.000 13.113 Atomic orbital electron populations 1.21619 0.96324 1.00789 0.99399 1.18858 0.93941 0.96954 0.88807 0.93203 1.21054 1.33208 1.10876 0.89069 0.91268 1.24924 0.95195 0.94790 0.99040 1.69931 1.42255 1.17308 1.23704 0.86470 0.78884 0.79903 0.82176 1.20613 1.19731 1.21254 1.21880 0.74651 0.87123 0.82913 1.90542 1.50537 1.16752 1.84035 1.49428 1.71166 1.08066 1.08367 1.22595 1.01968 0.82574 0.93965 1.25901 0.91749 1.01370 0.98669 0.83384 1.24121 1.02154 0.92380 0.99008 1.23211 0.91375 0.99584 0.84408 0.86199 1.25099 0.99430 0.91300 1.05464 1.88141 1.11982 1.12604 1.95843 0.90010 0.96811 0.94417 0.92901 0.90508 0.89649 0.88906 0.88775 0.88008 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.86 8.90 37.16 0.33 -2.53 16 2 C 0.04 0.89 2.11 -92.92 -0.20 0.69 16 3 H 0.05 1.28 7.17 -51.93 -0.37 0.91 16 4 C -0.50 -14.34 8.31 -34.44 -0.29 -14.62 16 5 H 0.07 2.08 7.04 -52.49 -0.37 1.71 16 6 C 0.06 1.72 5.24 -17.82 -0.09 1.63 16 7 N -0.89 -25.11 11.85 55.43 0.66 -24.45 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.54 12.45 6.94 -10.98 -0.08 12.37 16 13 O -0.54 -14.12 16.14 5.56 0.09 -14.03 16 14 N -0.63 -11.26 2.87 -158.13 -0.45 -11.71 16 15 C 0.11 1.69 5.40 -1.74 -0.01 1.68 16 16 C -0.05 -0.55 5.76 -22.45 -0.13 -0.68 16 17 H 0.15 1.28 8.14 -51.93 -0.42 0.86 16 18 C -0.14 -1.46 6.27 -22.51 -0.14 -1.60 16 19 C 0.12 1.69 4.37 -63.59 -0.28 1.41 16 20 H 0.12 1.71 8.08 -51.93 -0.42 1.29 16 21 C -0.06 -0.88 7.17 38.65 0.28 -0.60 16 22 S -0.31 -4.34 22.54 -107.50 -2.42 -6.76 16 23 H 0.08 2.04 6.68 -51.93 -0.35 1.69 16 24 H 0.01 0.26 7.83 -51.93 -0.41 -0.15 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.08 1.07 7.83 -51.93 -0.41 0.66 16 28 H 0.09 1.40 7.73 -51.93 -0.40 1.00 16 29 H 0.09 0.83 8.13 -51.92 -0.42 0.41 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 274.24 15.07 4.13 4.13 Total: -1.00 -31.38 274.24 -8.02 -39.39 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.39 Total: -1.14 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -0.60 Total: -2.26 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.20 Total: -36.16 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.09 Total: -14.03 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: -4.34 SS G_CDS: -2.42 Total: -6.76 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.38 -8.02 -39.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597761042.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.698 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds