Wall clock time and date at job start Mon Mar 30 2020 03:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47350 * 2 1 4 4 C 1.50706 * 109.46806 * 119.99484 * 2 1 3 5 5 H 1.08002 * 119.99729 * 117.96269 * 4 2 1 6 6 C 1.37871 * 120.00241 * 297.96867 * 4 2 1 7 7 N 1.31517 * 119.99953 * 353.01696 * 6 4 2 8 8 Si 1.86794 * 120.00136 * 173.01467 * 6 4 2 9 9 H 1.48505 * 109.47522 * 265.17781 * 8 6 4 10 10 H 1.48501 * 109.47296 * 25.18016 * 8 6 4 11 11 H 1.48504 * 109.47244 * 145.17587 * 8 6 4 12 12 C 1.50700 * 109.47092 * 239.99393 * 2 1 3 13 13 O 1.21275 * 120.00231 * 266.21612 * 12 2 1 14 14 N 1.34782 * 119.99763 * 86.21866 * 12 2 1 15 15 C 1.47554 * 125.71725 * 4.07821 * 14 12 2 16 16 C 1.56222 * 105.80405 * 176.35349 * 15 14 12 17 17 H 1.09001 * 117.64667 * 160.51083 * 16 15 14 18 18 C 1.57663 * 98.45465 * 33.35604 * 16 15 14 19 19 C 1.48625 * 125.71823 * 184.38262 * 14 12 2 20 20 H 1.09006 * 113.89099 * 29.02423 * 19 14 12 21 21 C 1.55791 * 106.48930 * 262.85983 * 19 14 12 22 22 S 1.85024 * 104.09539 * 291.74841 * 16 15 14 23 23 H 1.09000 * 109.47302 * 306.18172 * 1 2 3 24 24 H 1.09003 * 109.46963 * 66.18030 * 1 2 3 25 25 H 1.08994 * 109.47372 * 186.17958 * 1 2 3 26 26 H 0.96996 * 120.00090 * 179.97438 * 7 6 4 27 27 H 1.08997 * 110.17626 * 295.57581 * 15 14 12 28 28 H 1.09000 * 110.18022 * 57.39851 * 15 14 12 29 29 H 1.09007 * 111.56919 * 193.88213 * 18 16 15 30 30 H 1.08997 * 111.57062 * 68.56977 * 18 16 15 31 31 H 1.08998 * 110.75929 * 48.35592 * 21 19 14 32 32 H 1.09004 * 110.75813 * 171.73159 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6258 -1.6073 1.1319 6 6 1.7341 -0.2153 2.4823 7 7 1.1310 0.9471 2.6032 8 14 2.1867 -1.1956 4.0066 9 1 1.0213 -2.0097 4.4359 10 1 3.3297 -2.0919 3.6974 11 1 2.5693 -0.2645 5.0985 12 6 2.0324 -0.7105 -1.2304 13 8 2.2998 -1.8924 -1.1814 14 7 2.1844 -0.0325 -2.3853 15 6 1.9796 1.4176 -2.5662 16 6 2.3706 1.7209 -4.0480 17 1 1.9973 2.6443 -4.4907 18 6 1.8993 0.3624 -4.6947 19 6 2.5802 -0.6210 -3.6913 20 1 2.2783 -1.6609 -3.8167 21 6 4.1148 -0.3925 -3.8324 22 16 4.1998 1.4470 -4.0965 23 1 -0.3634 0.6067 0.8295 24 1 -0.3633 0.4150 -0.9402 25 1 -0.3634 -1.0216 0.1106 26 1 0.9208 1.2953 3.4838 27 1 0.9350 1.6745 -2.3904 28 1 2.6242 1.9759 -1.8873 29 1 2.2928 0.2414 -5.7041 30 1 0.8138 0.2654 -4.6769 31 1 4.6356 -0.6952 -2.9239 32 1 4.5067 -0.9248 -4.6992 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597761042.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:49 Heat of formation + Delta-G solvation = -40.282186 kcal Electronic energy + Delta-G solvation = -15806.700338 eV Core-core repulsion = 13278.933427 eV Total energy + Delta-G solvation = -2527.766910 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.24851 -38.77773 -35.79852 -33.31813 -31.81989 -31.45783 -27.27875 -27.18342 -25.17635 -23.10429 -21.85611 -20.17148 -18.41104 -18.20264 -17.54059 -16.92179 -16.33472 -16.04316 -15.18320 -14.94662 -14.72494 -14.39464 -14.20168 -13.73141 -13.47458 -13.10917 -12.90061 -12.80028 -12.62705 -12.55028 -12.43453 -12.31042 -12.22139 -12.06594 -11.12481 -11.02295 -10.59762 -10.38962 -9.66090 -8.74105 -8.21925 -6.29272 0.71269 1.24799 1.37671 1.38829 1.50067 1.82645 1.98675 2.42202 3.09729 3.13222 3.35212 3.59845 3.77717 4.05988 4.24273 4.46383 4.48706 4.59979 4.64265 4.73350 4.73933 4.82302 4.89081 4.90181 4.97995 5.28997 5.46251 5.66388 5.82102 6.11612 6.53524 6.76547 7.32208 7.41294 8.86775 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.039111 B = 0.006793 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.736951 B = 4120.747096 C = 4189.766457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.033 3.967 3 H 0.038 0.962 4 C -0.533 4.533 5 H 0.042 0.958 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.273 1.273 12 C 0.540 3.460 13 O -0.586 6.586 14 N -0.629 5.629 15 C 0.102 3.898 16 C -0.022 4.022 17 H 0.189 0.811 18 C -0.118 4.118 19 C 0.107 3.893 20 H 0.118 0.882 21 C -0.059 4.059 22 S -0.345 6.345 23 H 0.063 0.937 24 H 0.049 0.951 25 H 0.024 0.976 26 H 0.266 0.734 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 3.363 -15.893 16.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.011 3.989 3 H 0.056 0.944 4 C -0.571 4.571 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.205 1.205 11 H -0.198 1.198 12 C 0.332 3.668 13 O -0.465 6.465 14 N -0.364 5.364 15 C -0.022 4.022 16 C -0.150 4.150 17 H 0.207 0.793 18 C -0.157 4.157 19 C 0.003 3.997 20 H 0.136 0.864 21 C -0.208 4.208 22 S -0.119 6.119 23 H 0.082 0.918 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.427 3.598 -15.793 16.203 hybrid contribution -0.349 -1.300 1.510 2.023 sum 0.078 2.297 -14.283 14.467 Atomic orbital electron populations 1.21424 0.95031 0.99779 1.00509 1.18751 0.95023 0.95905 0.89185 0.94416 1.21196 1.33977 1.10642 0.91285 0.93988 1.25564 0.95048 0.95649 1.01324 1.69989 1.42261 1.17864 1.24558 0.85624 0.78535 0.78784 0.79221 1.19714 1.20478 1.19849 1.21345 0.74888 0.86529 0.84021 1.90507 1.52686 1.18320 1.85033 1.49259 1.69250 1.09519 1.08374 1.22819 1.02570 0.80361 0.96428 1.26119 0.89152 1.03652 0.96035 0.79349 1.24108 1.02912 0.89718 0.98929 1.23590 0.92090 1.00628 0.83356 0.86400 1.25027 0.98964 0.91638 1.05171 1.88308 1.15191 1.12827 1.95582 0.91845 0.93218 0.95718 0.92441 0.88922 0.91772 0.85987 0.86938 0.91428 0.85505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.08 8.90 71.98 0.64 -4.44 16 2 C 0.03 1.67 2.11 -12.28 -0.03 1.64 16 3 H 0.04 2.00 7.17 -2.39 -0.02 1.98 16 4 C -0.53 -31.35 8.31 25.60 0.21 -31.13 16 5 H 0.04 2.65 7.04 -2.91 -0.02 2.63 16 6 C 0.02 1.36 5.24 84.65 0.44 1.81 16 7 N -0.91 -51.35 11.85 21.45 0.25 -51.09 16 8 Si 0.95 45.27 29.54 68.60 2.03 47.30 16 9 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 C 0.54 25.35 6.94 87.66 0.61 25.96 16 13 O -0.59 -31.56 16.14 -3.01 -0.05 -31.61 16 14 N -0.63 -21.97 2.87 -772.58 -2.22 -24.19 16 15 C 0.10 2.84 5.40 87.30 0.47 3.32 16 16 C -0.02 -0.41 5.76 33.37 0.19 -0.22 16 17 H 0.19 2.19 8.14 -2.39 -0.02 2.17 16 18 C -0.12 -1.99 6.27 33.33 0.21 -1.78 16 19 C 0.11 2.85 4.37 46.63 0.20 3.05 16 20 H 0.12 3.22 8.08 -2.38 -0.02 3.20 16 21 C -0.06 -1.57 7.17 72.95 0.52 -1.05 16 22 S -0.34 -8.93 22.54 -56.49 -1.27 -10.21 16 23 H 0.06 3.16 6.68 -2.39 -0.02 3.15 16 24 H 0.05 1.89 7.83 -2.39 -0.02 1.87 16 25 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 27 H 0.09 2.32 7.83 -2.39 -0.02 2.30 16 28 H 0.06 2.08 7.73 -2.39 -0.02 2.06 16 29 H 0.12 1.50 8.13 -2.38 -0.02 1.48 16 30 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.13 2.56 8.14 -2.38 -0.02 2.54 16 Total: -1.00 -70.38 274.24 3.33 -67.06 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 1.11 Total: 5.59 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 3.48 Total: -2.85 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -1.96 Total: -75.28 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.05 Total: -31.61 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.27 Total: -10.21 kcal Total: -70.38 3.33 -67.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597761042.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.774 kcal (2) G-P(sol) polarization free energy of solvation -70.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds