Wall clock time and date at job start Mon Mar 30 2020 03:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81399 * 103.00048 * 2 1 4 4 C 1.50692 * 115.56411 * 326.57375 * 3 2 1 5 5 O 1.21276 * 120.00415 * 108.56927 * 4 3 2 6 6 N 1.34781 * 119.99924 * 288.57664 * 4 3 2 7 7 C 1.47066 * 136.05665 * 4.00890 * 6 4 3 8 8 C 1.53764 * 87.88743 * 152.96582 * 7 6 4 9 9 C 1.50695 * 114.08520 * 139.77604 * 8 7 6 10 10 H 1.07994 * 120.00443 * 266.56205 * 9 8 7 11 11 C 1.37880 * 119.99689 * 86.56431 * 9 8 7 12 12 N 1.31517 * 120.00034 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00108 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47075 * 89.99946 * 13 11 9 15 15 H 1.48503 * 109.47107 * 210.00363 * 13 11 9 16 16 H 1.48499 * 109.46911 * 329.99908 * 13 11 9 17 17 C 1.47067 * 136.05500 * 184.38455 * 6 4 3 18 18 C 1.52998 * 117.49895 * 180.88190 * 3 2 1 19 19 C 1.52998 * 60.00114 * 252.51344 * 18 3 2 20 20 H 1.09001 * 109.47443 * 296.32637 * 1 2 3 21 21 H 1.09004 * 109.46833 * 56.32967 * 1 2 3 22 22 H 1.09008 * 109.47235 * 176.32083 * 1 2 3 23 23 H 1.09000 * 113.46784 * 267.69539 * 7 6 4 24 24 H 1.08995 * 113.46648 * 38.14188 * 7 6 4 25 25 H 1.08992 * 114.39422 * 272.67719 * 8 7 6 26 26 H 0.97003 * 119.99862 * 179.97438 * 12 11 9 27 27 H 1.09002 * 113.47203 * 321.86083 * 17 6 4 28 28 H 1.08996 * 113.47157 * 92.24691 * 17 6 4 29 29 H 1.08997 * 117.49708 * 145.02205 * 18 3 2 30 30 H 1.09000 * 117.50076 * 0.02562 * 18 3 2 31 31 H 1.09002 * 117.49846 * 107.49241 * 19 18 3 32 32 H 1.09002 * 117.49770 * 252.50809 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.2628 2.6563 -0.7488 5 8 0.5277 3.4043 -0.1398 6 7 1.2218 2.6200 -2.0955 7 6 1.8703 1.8310 -3.1538 8 6 0.6391 2.1046 -4.0334 9 6 0.9659 2.3935 -5.4759 10 1 1.0903 3.4137 -5.8075 11 6 1.1058 1.3552 -6.3723 12 7 0.9537 0.1129 -5.9685 13 14 1.5101 1.7133 -8.1605 14 1 2.9841 1.7378 -8.3395 15 1 0.9244 0.6549 -9.0220 16 1 0.9432 3.0318 -8.5418 17 6 0.5138 3.3562 -3.1536 18 6 3.7031 2.1506 -0.0209 19 6 2.8819 2.3401 1.2560 20 1 -0.3634 0.4557 0.9211 21 1 -0.3633 0.5698 -0.8553 22 1 -0.3634 -1.0256 -0.0659 23 1 2.7852 2.2848 -3.5346 24 1 1.9962 0.7795 -2.8959 25 1 -0.1719 1.3873 -3.9082 26 1 1.0518 -0.6175 -6.5992 27 1 -0.5158 3.6042 -2.8956 28 1 1.0708 4.2126 -3.5338 29 1 3.9837 3.0454 -0.5763 30 1 4.4323 1.3406 -0.0351 31 1 3.0709 1.6548 2.0823 32 1 2.6222 3.3598 1.5407 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598022208.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:48 Heat of formation + Delta-G solvation = 28.280218 kcal Electronic energy + Delta-G solvation = -15434.502143 eV Core-core repulsion = 12909.708321 eV Total energy + Delta-G solvation = -2524.793821 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.73069 -37.61870 -35.85985 -32.70535 -29.46646 -28.66474 -25.70576 -24.97315 -23.42205 -22.42991 -20.26501 -18.53827 -17.03783 -16.71597 -15.76769 -15.56120 -14.95629 -14.55581 -14.23869 -13.48575 -13.30202 -13.06087 -12.66108 -12.40005 -12.09657 -11.62755 -11.54951 -11.35637 -11.08573 -10.98893 -10.86414 -10.58091 -10.38109 -10.25171 -9.53536 -9.25275 -9.03077 -8.60022 -7.93719 -7.44817 -6.19165 -4.25315 1.66655 2.43566 3.14000 3.22769 3.30370 3.32082 3.38075 3.76156 4.31995 4.74510 4.75470 4.85602 5.10647 5.33816 5.37766 5.49660 5.58041 5.82749 5.95138 6.01297 6.06856 6.12521 6.20037 6.38055 6.56940 6.66269 6.84663 7.51896 7.77641 8.15599 8.38230 8.63011 8.78222 9.41487 10.90277 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.033037 B = 0.006690 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.340049 B = 4184.165862 C = 4395.945045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.174 6.174 3 C -0.138 4.138 4 C 0.565 3.435 5 O -0.557 6.557 6 N -0.631 5.631 7 C 0.098 3.902 8 C 0.037 3.963 9 C -0.519 4.519 10 H 0.063 0.937 11 C 0.070 3.930 12 N -0.882 5.882 13 Si 0.895 3.105 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.272 1.272 17 C 0.099 3.901 18 C -0.128 4.128 19 C -0.131 4.131 20 H 0.077 0.923 21 H 0.082 0.918 22 H 0.103 0.897 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.264 0.736 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.604 0.330 9.433 10.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S 0.056 5.944 3 C -0.250 4.250 4 C 0.351 3.649 5 O -0.437 6.437 6 N -0.363 5.363 7 C -0.024 4.024 8 C 0.018 3.982 9 C -0.558 4.558 10 H 0.081 0.919 11 C -0.134 4.134 12 N -0.519 5.519 13 Si 0.722 3.278 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.023 4.023 18 C -0.167 4.167 19 C -0.172 4.172 20 H 0.096 0.904 21 H 0.101 0.899 22 H 0.121 0.879 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.873 -0.400 9.887 10.626 hybrid contribution -0.521 1.049 -1.017 1.551 sum 3.352 0.650 8.870 9.505 Atomic orbital electron populations 1.23458 0.94104 1.06403 1.05639 1.86214 1.07669 1.03385 1.97147 1.23434 0.99192 0.95916 1.06506 1.18727 0.83012 0.82293 0.80900 1.90645 1.43254 1.42269 1.67563 1.49951 1.45132 1.38668 1.02595 1.23758 0.99747 0.95380 0.83513 1.20374 0.93635 0.91282 0.92890 1.20880 1.49411 0.93247 0.92212 0.91859 1.25023 0.94448 0.95011 0.98944 1.69956 1.48058 0.98531 1.35344 0.86547 0.78637 0.78190 0.84384 1.20487 1.21103 1.19717 1.23426 0.95758 0.98545 0.84552 1.23005 0.89827 1.03358 1.00546 1.23288 1.00219 1.02821 0.90875 0.90400 0.89885 0.87866 0.90919 0.91125 0.91410 0.92590 0.92479 0.90678 0.87646 0.87288 0.87149 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 10.14 101.05 1.02 -0.91 16 2 S -0.17 -2.76 22.46 -107.50 -2.41 -5.17 16 3 C -0.14 -2.26 2.40 -91.78 -0.22 -2.48 16 4 C 0.56 11.24 5.94 -10.99 -0.07 11.18 16 5 O -0.56 -12.54 17.63 5.56 0.10 -12.45 16 6 N -0.63 -12.91 3.69 -185.03 -0.68 -13.59 16 7 C 0.10 2.09 8.00 -8.36 -0.07 2.02 16 8 C 0.04 0.87 3.80 -91.12 -0.35 0.52 16 9 C -0.52 -13.10 8.82 -34.44 -0.30 -13.40 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 12 N -0.88 -23.86 13.26 55.43 0.74 -23.12 16 13 Si 0.90 19.91 29.54 -169.99 -5.02 14.89 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 C 0.10 2.06 8.18 -8.50 -0.07 1.99 16 18 C -0.13 -1.73 10.00 -26.73 -0.27 -2.00 16 19 C -0.13 -1.75 9.84 -26.73 -0.26 -2.02 16 20 H 0.08 1.12 8.14 -51.92 -0.42 0.69 16 21 H 0.08 1.46 7.48 -51.92 -0.39 1.07 16 22 H 0.10 1.33 8.14 -51.92 -0.42 0.91 16 23 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 24 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 25 H 0.07 1.73 8.11 -51.93 -0.42 1.30 16 26 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 29 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.10 1.43 8.10 -51.93 -0.42 1.00 16 LS Contribution 293.46 15.07 4.42 4.42 Total: -1.00 -28.27 293.46 -8.11 -36.39 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -4.57 Total: 2.03 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -0.68 Total: -3.40 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.05 Total: -36.71 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.10 Total: -12.45 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.41 Total: -5.17 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.27 -8.11 -36.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598022208.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.667 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds