Wall clock time and date at job start Mon Mar 30 2020 03:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81399 * 103.00048 * 2 1 4 4 C 1.50692 * 115.56411 * 326.57375 * 3 2 1 5 5 O 1.21276 * 120.00415 * 108.56927 * 4 3 2 6 6 N 1.34781 * 119.99924 * 288.57664 * 4 3 2 7 7 C 1.47066 * 136.05665 * 4.00890 * 6 4 3 8 8 C 1.53764 * 87.88743 * 152.96582 * 7 6 4 9 9 C 1.50695 * 114.08520 * 139.77604 * 8 7 6 10 10 H 1.07994 * 120.00443 * 266.56205 * 9 8 7 11 11 C 1.37880 * 119.99689 * 86.56431 * 9 8 7 12 12 N 1.31517 * 120.00034 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00108 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47075 * 89.99946 * 13 11 9 15 15 H 1.48503 * 109.47107 * 210.00363 * 13 11 9 16 16 H 1.48499 * 109.46911 * 329.99908 * 13 11 9 17 17 C 1.47067 * 136.05500 * 184.38455 * 6 4 3 18 18 C 1.52998 * 117.49895 * 180.88190 * 3 2 1 19 19 C 1.52998 * 60.00114 * 252.51344 * 18 3 2 20 20 H 1.09001 * 109.47443 * 296.32637 * 1 2 3 21 21 H 1.09004 * 109.46833 * 56.32967 * 1 2 3 22 22 H 1.09008 * 109.47235 * 176.32083 * 1 2 3 23 23 H 1.09000 * 113.46784 * 267.69539 * 7 6 4 24 24 H 1.08995 * 113.46648 * 38.14188 * 7 6 4 25 25 H 1.08992 * 114.39422 * 272.67719 * 8 7 6 26 26 H 0.97003 * 119.99862 * 179.97438 * 12 11 9 27 27 H 1.09002 * 113.47203 * 321.86083 * 17 6 4 28 28 H 1.08996 * 113.47157 * 92.24691 * 17 6 4 29 29 H 1.08997 * 117.49708 * 145.02205 * 18 3 2 30 30 H 1.09000 * 117.50076 * 0.02562 * 18 3 2 31 31 H 1.09002 * 117.49846 * 107.49241 * 19 18 3 32 32 H 1.09002 * 117.49770 * 252.50809 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.2628 2.6563 -0.7488 5 8 0.5277 3.4043 -0.1398 6 7 1.2218 2.6200 -2.0955 7 6 1.8703 1.8310 -3.1538 8 6 0.6391 2.1046 -4.0334 9 6 0.9659 2.3935 -5.4759 10 1 1.0903 3.4137 -5.8075 11 6 1.1058 1.3552 -6.3723 12 7 0.9537 0.1129 -5.9685 13 14 1.5101 1.7133 -8.1605 14 1 2.9841 1.7378 -8.3395 15 1 0.9244 0.6549 -9.0220 16 1 0.9432 3.0318 -8.5418 17 6 0.5138 3.3562 -3.1536 18 6 3.7031 2.1506 -0.0209 19 6 2.8819 2.3401 1.2560 20 1 -0.3634 0.4557 0.9211 21 1 -0.3633 0.5698 -0.8553 22 1 -0.3634 -1.0256 -0.0659 23 1 2.7852 2.2848 -3.5346 24 1 1.9962 0.7795 -2.8959 25 1 -0.1719 1.3873 -3.9082 26 1 1.0518 -0.6175 -6.5992 27 1 -0.5158 3.6042 -2.8956 28 1 1.0708 4.2126 -3.5338 29 1 3.9837 3.0454 -0.5763 30 1 4.4323 1.3406 -0.0351 31 1 3.0709 1.6548 2.0823 32 1 2.6222 3.3598 1.5407 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598022208.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:48 Heat of formation + Delta-G solvation = 12.432240 kcal Electronic energy + Delta-G solvation = -15435.189363 eV Core-core repulsion = 12909.708321 eV Total energy + Delta-G solvation = -2525.481041 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.34007 -39.20778 -37.21000 -34.64844 -31.17329 -29.94152 -27.48354 -26.72508 -24.89878 -23.49339 -21.96985 -20.07173 -18.79218 -18.36570 -17.25367 -17.02008 -16.57205 -16.20812 -15.74932 -14.88527 -14.63581 -14.55359 -14.20704 -14.02679 -13.50766 -13.29089 -13.18993 -12.79028 -12.67260 -12.59599 -12.26717 -12.19858 -11.91445 -11.53744 -11.22804 -11.08366 -10.70310 -10.51693 -9.63920 -8.68857 -8.15630 -6.27422 0.41036 1.13195 1.47894 1.50144 1.59261 1.65333 1.92090 2.46015 2.54865 3.13665 3.32061 3.54413 3.75597 4.10396 4.17543 4.20645 4.35054 4.40014 4.51951 4.56912 4.65397 4.71729 4.79759 4.84062 4.96224 5.05634 5.06876 5.57726 5.80915 6.22308 6.75623 6.81027 7.00539 7.42619 8.94005 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.033037 B = 0.006690 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.340049 B = 4184.165862 C = 4395.945045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.172 6.172 3 C -0.169 4.169 4 C 0.565 3.435 5 O -0.586 6.586 6 N -0.632 5.632 7 C 0.117 3.883 8 C 0.027 3.973 9 C -0.530 4.530 10 H 0.067 0.933 11 C 0.023 3.977 12 N -0.916 5.916 13 Si 0.958 3.042 14 H -0.273 1.273 15 H -0.287 1.287 16 H -0.267 1.267 17 C 0.104 3.896 18 C -0.114 4.114 19 C -0.112 4.112 20 H 0.084 0.916 21 H 0.052 0.948 22 H 0.124 0.876 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.037 0.963 26 H 0.265 0.735 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.128 0.872 31 H 0.135 0.865 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.920 0.605 9.795 10.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S 0.057 5.943 3 C -0.281 4.281 4 C 0.353 3.647 5 O -0.469 6.469 6 N -0.364 5.364 7 C -0.005 4.005 8 C 0.008 3.992 9 C -0.568 4.568 10 H 0.086 0.914 11 C -0.178 4.178 12 N -0.553 5.553 13 Si 0.783 3.217 14 H -0.198 1.198 15 H -0.213 1.213 16 H -0.191 1.191 17 C -0.018 4.018 18 C -0.153 4.153 19 C -0.152 4.152 20 H 0.103 0.897 21 H 0.072 0.928 22 H 0.142 0.858 23 H 0.098 0.902 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.198 -0.113 10.259 11.501 hybrid contribution -0.983 0.977 -1.086 1.761 sum 4.214 0.864 9.173 10.132 Atomic orbital electron populations 1.23463 0.93995 1.07358 1.04602 1.86138 1.07839 1.03066 1.97212 1.23470 1.00228 0.95541 1.08900 1.19294 0.82934 0.82147 0.80360 1.90620 1.44600 1.43766 1.67901 1.49921 1.45006 1.38461 1.03023 1.23438 0.98934 0.95025 0.83130 1.20231 0.93823 0.92078 0.93082 1.21185 1.48923 0.93462 0.93207 0.91435 1.25754 0.94433 0.94799 1.02781 1.70069 1.49328 0.99338 1.36592 0.85560 0.78529 0.77970 0.79626 1.19838 1.21313 1.19104 1.23315 0.96186 0.97938 0.84326 1.23171 0.88103 1.03835 1.00153 1.23413 0.98061 1.02939 0.90798 0.89655 0.92838 0.85766 0.90191 0.91976 0.94469 0.92649 0.92592 0.89299 0.87438 0.85355 0.84738 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 10.14 113.37 1.15 -2.61 16 2 S -0.17 -5.23 22.46 -56.49 -1.27 -6.50 16 3 C -0.17 -5.28 2.40 -11.54 -0.03 -5.30 16 4 C 0.56 22.15 5.94 87.65 0.52 22.67 16 5 O -0.59 -26.25 17.63 -3.02 -0.05 -26.30 16 6 N -0.63 -25.70 3.69 -857.71 -3.16 -28.86 16 7 C 0.12 4.95 8.00 83.27 0.67 5.62 16 8 C 0.03 1.28 3.80 -11.11 -0.04 1.24 16 9 C -0.53 -26.65 8.82 25.60 0.23 -26.42 16 10 H 0.07 3.27 7.81 -2.91 -0.02 3.25 16 11 C 0.02 1.18 5.46 84.65 0.46 1.64 16 12 N -0.92 -49.94 13.26 21.45 0.28 -49.66 16 13 Si 0.96 40.47 29.54 68.60 2.03 42.49 16 14 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 15 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 17 C 0.10 4.34 8.18 83.19 0.68 5.02 16 18 C -0.11 -2.76 10.00 30.59 0.31 -2.46 16 19 C -0.11 -2.68 9.84 30.59 0.30 -2.38 16 20 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 21 H 0.05 1.91 7.48 -2.39 -0.02 1.89 16 22 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 23 H 0.08 3.26 8.10 -2.39 -0.02 3.24 16 24 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 25 H 0.04 1.97 8.11 -2.39 -0.02 1.95 16 26 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 27 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.09 3.44 8.10 -2.39 -0.02 3.42 16 29 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.10 2.54 8.10 -2.39 -0.02 2.53 16 Total: -1.00 -59.67 293.46 3.16 -56.50 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.10 Total: 15.30 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 4.24 Total: -2.98 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -2.88 Total: -78.52 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.05 Total: -26.30 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.49 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -1.27 Total: -6.50 kcal Total: -59.67 3.16 -56.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598022208.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.937 kcal (2) G-P(sol) polarization free energy of solvation -59.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds