Wall clock time and date at job start Mon Mar 30 2020 04:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 C 1.50703 * 109.47225 * 180.02562 * 6 4 3 8 8 O 1.21277 * 120.00086 * 359.97438 * 7 6 4 9 9 N 1.34783 * 119.99530 * 179.97438 * 7 6 4 10 10 C 1.47060 * 136.06195 * 359.63232 * 9 7 6 11 11 C 1.53750 * 87.89164 * 152.95997 * 10 9 7 12 12 C 1.50703 * 114.27007 * 139.78851 * 11 10 9 13 13 H 1.08004 * 120.00058 * 266.47649 * 12 11 10 14 14 C 1.37878 * 119.99699 * 86.47581 * 12 11 10 15 15 N 1.31510 * 120.00282 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99644 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46894 * 90.00207 * 16 14 12 18 18 H 1.48502 * 109.46984 * 209.99831 * 16 14 12 19 19 H 1.48498 * 109.47079 * 329.99828 * 16 14 12 20 20 C 1.47070 * 136.05259 * 179.97438 * 9 7 6 21 21 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 22 22 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 23 23 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 25 25 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 26 26 H 1.09009 * 109.46972 * 299.99362 * 6 4 3 27 27 H 1.08995 * 109.47473 * 59.99636 * 6 4 3 28 28 H 1.09006 * 113.46611 * 267.69369 * 10 9 7 29 29 H 1.09000 * 113.47108 * 38.12495 * 10 9 7 30 30 H 1.09003 * 114.39334 * 272.67465 * 11 10 9 31 31 H 0.96995 * 120.00464 * 179.97438 * 15 14 12 32 32 H 1.09006 * 113.46783 * 321.86452 * 20 9 7 33 33 H 1.08996 * 113.46570 * 92.24413 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 6 5.4255 2.8587 0.0010 8 8 5.9761 1.7782 0.0010 9 7 6.1594 3.9892 0.0010 10 6 5.8802 5.4330 -0.0055 11 6 7.2309 5.6398 0.6995 12 6 8.0097 6.8328 0.2084 13 1 8.7474 6.7125 -0.5712 14 6 7.7805 8.0780 0.7544 15 7 6.8819 8.2246 1.7034 16 14 8.7454 9.5569 0.1452 17 1 8.0180 10.1919 -0.9830 18 1 8.8982 10.5375 1.2500 19 1 10.0869 9.1172 -0.3154 20 6 7.5921 4.3215 0.0014 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 3.5850 3.4699 -0.8889 27 1 3.5843 3.4695 0.8911 28 1 5.8426 5.8634 -1.0063 29 1 5.0223 5.7121 0.6063 30 1 7.1863 5.5720 1.7865 31 1 6.7209 9.1004 2.0878 32 1 8.1925 3.6536 0.6192 33 1 8.0064 4.4575 -0.9976 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598036683.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:38 Heat of formation + Delta-G solvation = -106.196843 kcal Electronic energy + Delta-G solvation = -16879.057504 eV Core-core repulsion = 13905.679448 eV Total energy + Delta-G solvation = -2973.378055 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.81349 -40.80982 -38.82710 -37.42986 -34.62768 -33.11892 -32.06818 -30.25498 -26.98857 -26.62763 -24.43382 -22.79492 -21.82755 -19.71277 -19.01069 -18.61307 -17.87419 -17.52163 -17.31784 -16.65318 -16.25794 -16.15029 -15.51844 -14.80803 -14.30106 -14.15908 -13.86789 -13.53559 -13.42252 -13.20833 -13.02984 -12.80810 -12.74216 -12.55341 -12.50011 -12.16625 -11.66327 -11.52722 -11.32287 -11.02135 -10.65972 -10.47518 -9.54269 -8.13985 -6.24421 1.14048 1.32464 1.49644 1.52691 1.59392 1.61905 2.19849 2.49274 3.16440 3.30896 3.74646 3.99738 4.09784 4.18670 4.26994 4.28954 4.35491 4.45182 4.56533 4.74015 4.81145 4.90242 4.93725 5.00856 5.09653 5.14814 5.43107 5.63751 5.85034 6.26608 6.71313 6.83854 6.90534 7.15698 7.45450 8.95837 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.052947 B = 0.004241 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.701685 B = 6600.006428 C = 6975.820656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.356 6.356 4 C 0.465 3.535 5 O -0.511 6.511 6 C -0.120 4.120 7 C 0.524 3.476 8 O -0.571 6.571 9 N -0.644 5.644 10 C 0.112 3.888 11 C 0.021 3.979 12 C -0.528 4.528 13 H 0.065 0.935 14 C 0.024 3.976 15 N -0.916 5.916 16 Si 0.956 3.044 17 H -0.272 1.272 18 H -0.288 1.288 19 H -0.270 1.270 20 C 0.105 3.895 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.100 0.900 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.165 0.835 27 H 0.159 0.841 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.265 0.735 32 H 0.051 0.949 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.646 -7.496 -3.918 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.307 3.693 5 O -0.398 6.398 6 C -0.159 4.159 7 C 0.314 3.686 8 O -0.450 6.450 9 N -0.378 5.378 10 C -0.010 4.010 11 C 0.002 3.998 12 C -0.566 4.566 13 H 0.083 0.917 14 C -0.177 4.177 15 N -0.554 5.554 16 Si 0.782 3.218 17 H -0.197 1.197 18 H -0.214 1.214 19 H -0.194 1.194 20 C -0.017 4.017 21 H 0.089 0.911 22 H 0.090 0.910 23 H 0.118 0.882 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.183 0.817 27 H 0.177 0.823 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.383 -8.467 -3.799 15.474 hybrid contribution 0.699 0.571 -0.056 0.904 sum -11.684 -7.896 -3.855 14.619 Atomic orbital electron populations 1.21818 0.89831 1.04439 1.03936 1.23313 0.97342 0.79147 1.02375 1.86481 1.23018 1.33805 1.84075 1.23241 0.81051 0.92179 0.72860 1.90803 1.60784 1.43745 1.44455 1.21153 0.90798 0.93093 1.10872 1.20093 0.89540 0.82177 0.76794 1.90789 1.73955 1.28356 1.51920 1.49958 1.10136 1.06662 1.71077 1.23485 1.01134 0.75242 1.01141 1.20278 0.93133 0.91177 0.95225 1.21202 1.21983 0.92397 1.21056 0.91701 1.25707 0.95811 1.01595 0.94571 1.70035 1.34089 1.24545 1.26769 0.85582 0.79295 0.79033 0.77887 1.19726 1.21410 1.19436 1.23247 0.81763 0.95919 1.00789 0.91090 0.90958 0.88158 0.91569 0.91737 0.81750 0.82337 0.89499 0.90899 0.94139 0.92626 0.93035 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 10.29 71.98 0.74 -1.03 16 2 C 0.05 1.03 6.19 71.98 0.45 1.48 16 3 O -0.36 -8.74 10.22 -51.35 -0.52 -9.27 16 4 C 0.46 14.17 7.95 71.23 0.57 14.74 16 5 O -0.51 -20.40 13.93 29.70 0.41 -19.99 16 6 C -0.12 -3.20 6.13 29.10 0.18 -3.02 16 7 C 0.52 20.08 8.07 87.66 0.71 20.79 16 8 O -0.57 -27.20 14.96 20.42 0.31 -26.89 16 9 N -0.64 -24.90 3.69 -857.85 -3.16 -28.07 16 10 C 0.11 4.28 8.00 83.26 0.67 4.94 16 11 C 0.02 0.96 3.79 -11.12 -0.04 0.92 16 12 C -0.53 -26.04 8.83 25.60 0.23 -25.81 16 13 H 0.06 3.12 7.81 -2.91 -0.02 3.09 16 14 C 0.02 1.19 5.46 84.66 0.46 1.65 16 15 N -0.92 -48.51 13.26 21.45 0.28 -48.23 16 16 Si 0.96 39.82 29.54 68.60 2.03 41.85 16 17 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 18 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 20 C 0.11 4.33 8.17 83.17 0.68 5.00 16 21 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 1.36 8.13 -2.39 -0.02 1.34 16 25 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 26 H 0.17 3.23 8.14 -2.38 -0.02 3.21 16 27 H 0.16 3.39 8.14 -2.39 -0.02 3.37 16 28 H 0.09 3.16 8.10 -2.38 -0.02 3.14 16 29 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.04 2.07 8.11 -2.39 -0.02 2.05 16 31 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 32 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.08 3.27 8.10 -2.39 -0.02 3.25 16 Total: -1.00 -67.32 293.50 5.07 -62.26 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 1.09 Total: 8.67 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: 4.63 Total: 19.67 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -2.88 Total: -76.29 kcal Atomic # 8 Polarization: -56.35 SS G_CDS: 0.19 Total: -56.15 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -67.32 5.07 -62.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598036683.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.939 kcal (2) G-P(sol) polarization free energy of solvation -67.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds