Wall clock time and date at job start Mon Mar 30 2020 03:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.46932 * 2 1 4 4 N 1.29418 * 125.69229 * 90.02764 * 3 2 1 5 5 N 1.26398 * 116.47044 * 179.73090 * 4 3 2 6 6 C 1.29407 * 116.48085 * 0.02562 * 5 4 3 7 7 C 1.50697 * 125.70093 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47227 * 89.96869 * 7 6 5 9 9 C 1.36933 * 120.00165 * 90.00687 * 8 7 6 10 10 H 1.07998 * 120.00087 * 8.07255 * 9 8 7 11 11 C 1.38809 * 120.00363 * 188.07755 * 9 8 7 12 12 N 1.31622 * 119.99838 * 25.47566 * 11 9 8 13 13 Si 1.86803 * 120.00400 * 205.47871 * 11 9 8 14 14 H 1.48499 * 109.47289 * 84.98164 * 13 11 9 15 15 H 1.48499 * 109.47312 * 204.98801 * 13 11 9 16 16 H 1.48504 * 109.46645 * 324.98330 * 13 11 9 17 17 C 1.46496 * 120.00039 * 269.99682 * 8 7 6 18 18 C 1.53011 * 109.46682 * 84.12398 * 17 8 7 19 19 S 1.71218 * 125.69659 * 269.71420 * 3 2 1 20 20 H 1.08997 * 109.47193 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46740 * 299.99871 * 1 2 3 22 22 H 1.09002 * 109.46870 * 59.99832 * 1 2 3 23 23 H 1.08999 * 109.47636 * 240.00300 * 2 1 3 24 24 H 1.08996 * 109.47297 * 120.00077 * 2 1 3 25 25 H 1.08998 * 109.47290 * 209.97130 * 7 6 5 26 26 H 1.09001 * 109.46945 * 329.96765 * 7 6 5 27 27 H 0.96999 * 120.00224 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.47752 * 204.11931 * 17 8 7 29 29 H 1.09006 * 109.47537 * 324.13026 * 17 8 7 30 30 H 1.08998 * 109.46756 * 60.00410 * 18 17 8 31 31 H 1.08997 * 109.46915 * 180.02562 * 18 17 8 32 32 H 1.08996 * 109.47136 * 299.99711 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2844 2.1326 1.0511 5 7 2.7052 3.3072 0.8485 6 6 2.8367 3.6679 -0.3873 7 6 3.3197 5.0134 -0.8640 8 7 4.7766 4.9837 -1.0154 9 6 5.3333 4.6159 -2.2112 10 1 4.7054 4.4743 -3.0784 11 6 6.7047 4.4250 -2.3089 12 7 7.4016 4.0996 -1.2407 13 14 7.5614 4.6299 -3.9561 14 1 7.8889 6.0627 -4.1689 15 1 8.8121 3.8293 -3.9667 16 1 6.6642 4.1606 -5.0424 17 6 5.6378 5.3476 0.1124 18 6 5.8348 4.1296 1.0173 19 16 2.3718 2.3605 -1.3905 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 2.8593 5.2454 -1.8243 26 1 3.0456 5.7767 -0.1358 27 1 8.3600 3.9666 -1.3088 28 1 6.6053 5.6821 -0.2623 29 1 5.1709 6.1514 0.6816 30 1 6.3018 3.3259 0.4481 31 1 6.4753 4.4005 1.8567 32 1 4.8675 3.7951 1.3920 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612065636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:49 Heat of formation + Delta-G solvation = 82.066092 kcal Electronic energy + Delta-G solvation = -15477.224358 eV Core-core repulsion = 12987.055618 eV Total energy + Delta-G solvation = -2490.168740 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.46513 -36.36191 -34.20625 -31.97775 -30.27436 -29.13145 -26.92953 -24.88002 -23.38864 -22.58498 -20.60433 -19.01108 -18.49901 -16.82063 -15.49143 -14.89831 -14.84453 -14.22995 -13.77381 -13.69823 -13.10849 -12.77696 -12.39373 -11.98643 -11.82380 -11.79336 -11.49055 -11.15783 -10.94388 -10.83471 -10.55956 -10.15795 -9.96104 -9.71705 -9.52156 -9.38629 -8.95835 -8.84704 -8.49750 -7.18473 -6.00742 -3.26933 1.16033 1.70220 2.20257 3.27038 3.30164 3.36306 3.37906 4.32256 4.54966 5.05622 5.08435 5.24585 5.27007 5.38887 5.54924 5.79157 5.83919 5.97061 6.12645 6.26084 6.29445 6.42546 6.58417 6.91810 7.10898 7.17841 7.48202 7.68573 8.03026 8.12387 8.98207 9.34937 9.57576 10.02624 11.00271 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.031141 B = 0.007638 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.908649 B = 3665.174663 C = 4026.575221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 C -0.056 4.056 4 N -0.263 5.263 5 N -0.282 5.282 6 C 0.002 3.998 7 C 0.213 3.787 8 N -0.565 5.565 9 C -0.258 4.258 10 H 0.081 0.919 11 C 0.005 3.995 12 N -0.877 5.877 13 Si 0.907 3.093 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.278 1.278 17 C 0.163 3.837 18 C -0.160 4.160 19 S 0.131 5.869 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.258 0.742 28 H 0.090 0.910 29 H 0.012 0.988 30 H 0.081 0.919 31 H 0.019 0.981 32 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.621 -3.893 -1.112 10.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.076 4.076 3 C -0.337 4.337 4 N -0.101 5.101 5 N -0.121 5.121 6 C -0.280 4.280 7 C 0.080 3.920 8 N -0.283 5.283 9 C -0.388 4.388 10 H 0.099 0.901 11 C -0.196 4.196 12 N -0.519 5.519 13 Si 0.736 3.264 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.203 1.203 17 C 0.039 3.961 18 C -0.219 4.219 19 S 0.374 5.626 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.030 0.970 30 H 0.100 0.900 31 H 0.038 0.962 32 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.358 -3.807 -0.744 10.130 hybrid contribution 0.778 -0.293 -0.574 1.010 sum -8.580 -4.101 -1.317 9.600 Atomic orbital electron populations 1.21753 0.94003 1.01975 1.02529 1.19945 0.96216 0.87684 1.03739 1.28812 1.07841 1.04172 0.92826 1.71259 1.12100 0.99395 1.27379 1.71289 1.16105 1.07154 1.17591 1.31676 0.98826 1.05563 0.91913 1.19837 0.85827 0.87043 0.99279 1.44908 0.98543 1.74033 1.10862 1.19441 0.91029 1.42090 0.86283 0.90124 1.24905 0.97237 0.99750 0.97665 1.70226 1.07334 1.46255 1.28133 0.86224 0.78986 0.78072 0.83104 1.21057 1.21692 1.20311 1.20994 0.95124 0.93428 0.86584 1.22330 0.99138 1.02249 0.98168 1.83558 1.57670 1.07674 1.13671 0.91799 0.92134 0.92498 0.90073 0.89400 0.90890 0.90491 0.93201 0.89209 0.96992 0.89998 0.96155 0.94581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.89 37.16 0.37 -1.17 16 2 C -0.03 -0.45 6.54 -27.88 -0.18 -0.63 16 3 C -0.06 -1.00 6.78 -13.29 -0.09 -1.09 16 4 N -0.26 -5.51 11.66 32.58 0.38 -5.13 16 5 N -0.28 -6.25 9.88 32.58 0.32 -5.93 16 6 C 0.00 0.03 6.63 -13.30 -0.09 -0.05 16 7 C 0.21 4.31 6.30 -5.19 -0.03 4.27 16 8 N -0.57 -13.46 2.52 -174.61 -0.44 -13.91 16 9 C -0.26 -6.53 9.70 -15.06 -0.15 -6.68 16 10 H 0.08 1.97 7.93 -52.49 -0.42 1.55 16 11 C 0.00 0.13 4.89 -17.43 -0.09 0.04 16 12 N -0.88 -23.71 8.61 55.49 0.48 -23.24 16 13 Si 0.91 20.44 29.62 -169.99 -5.04 15.40 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 C 0.16 3.94 5.64 -4.04 -0.02 3.91 16 18 C -0.16 -3.94 9.58 37.16 0.36 -3.59 16 19 S 0.13 2.34 23.04 -107.50 -2.48 -0.14 16 20 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.07 1.32 8.03 -51.93 -0.42 0.91 16 26 H 0.08 1.46 7.95 -51.93 -0.41 1.04 16 27 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.09 2.35 5.85 -51.93 -0.30 2.04 16 29 H 0.01 0.26 7.98 -51.93 -0.41 -0.15 16 30 H 0.08 2.27 6.33 -51.93 -0.33 1.94 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.89 5.88 -51.93 -0.31 0.58 16 LS Contribution 279.73 15.07 4.22 4.22 Total: -1.00 -28.82 279.73 -6.75 -35.57 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -4.27 Total: -1.88 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 0.08 Total: -4.98 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.74 Total: -48.20 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.04 Total: 15.40 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.48 Total: -0.14 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.82 -6.75 -35.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612065636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.639 kcal (2) G-P(sol) polarization free energy of solvation -28.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds