Wall clock time and date at job start Mon Mar 30 2020 03:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.46932 * 2 1 4 4 N 1.29418 * 125.69229 * 90.02764 * 3 2 1 5 5 N 1.26398 * 116.47044 * 179.73090 * 4 3 2 6 6 C 1.29407 * 116.48085 * 0.02562 * 5 4 3 7 7 C 1.50697 * 125.70093 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.47227 * 89.96869 * 7 6 5 9 9 C 1.36933 * 120.00165 * 90.00687 * 8 7 6 10 10 H 1.07998 * 120.00087 * 8.07255 * 9 8 7 11 11 C 1.38809 * 120.00363 * 188.07755 * 9 8 7 12 12 N 1.31622 * 119.99838 * 25.47566 * 11 9 8 13 13 Si 1.86803 * 120.00400 * 205.47871 * 11 9 8 14 14 H 1.48499 * 109.47289 * 84.98164 * 13 11 9 15 15 H 1.48499 * 109.47312 * 204.98801 * 13 11 9 16 16 H 1.48504 * 109.46645 * 324.98330 * 13 11 9 17 17 C 1.46496 * 120.00039 * 269.99682 * 8 7 6 18 18 C 1.53011 * 109.46682 * 84.12398 * 17 8 7 19 19 S 1.71218 * 125.69659 * 269.71420 * 3 2 1 20 20 H 1.08997 * 109.47193 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46740 * 299.99871 * 1 2 3 22 22 H 1.09002 * 109.46870 * 59.99832 * 1 2 3 23 23 H 1.08999 * 109.47636 * 240.00300 * 2 1 3 24 24 H 1.08996 * 109.47297 * 120.00077 * 2 1 3 25 25 H 1.08998 * 109.47290 * 209.97130 * 7 6 5 26 26 H 1.09001 * 109.46945 * 329.96765 * 7 6 5 27 27 H 0.96999 * 120.00224 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.47752 * 204.11931 * 17 8 7 29 29 H 1.09006 * 109.47537 * 324.13026 * 17 8 7 30 30 H 1.08998 * 109.46756 * 60.00410 * 18 17 8 31 31 H 1.08997 * 109.46915 * 180.02562 * 18 17 8 32 32 H 1.08996 * 109.47136 * 299.99711 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2844 2.1326 1.0511 5 7 2.7052 3.3072 0.8485 6 6 2.8367 3.6679 -0.3873 7 6 3.3197 5.0134 -0.8640 8 7 4.7766 4.9837 -1.0154 9 6 5.3333 4.6159 -2.2112 10 1 4.7054 4.4743 -3.0784 11 6 6.7047 4.4250 -2.3089 12 7 7.4016 4.0996 -1.2407 13 14 7.5614 4.6299 -3.9561 14 1 7.8889 6.0627 -4.1689 15 1 8.8121 3.8293 -3.9667 16 1 6.6642 4.1606 -5.0424 17 6 5.6378 5.3476 0.1124 18 6 5.8348 4.1296 1.0173 19 16 2.3718 2.3605 -1.3905 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 2.8593 5.2454 -1.8243 26 1 3.0456 5.7767 -0.1358 27 1 8.3600 3.9666 -1.3088 28 1 6.6053 5.6821 -0.2623 29 1 5.1709 6.1514 0.6816 30 1 6.3018 3.3259 0.4481 31 1 6.4753 4.4005 1.8567 32 1 4.8675 3.7951 1.3920 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612065636.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:49 Heat of formation + Delta-G solvation = 64.988557 kcal Electronic energy + Delta-G solvation = -15477.964896 eV Core-core repulsion = 12987.055618 eV Total energy + Delta-G solvation = -2490.909277 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.05719 -38.12653 -35.43055 -33.69302 -32.02270 -30.83344 -28.48407 -26.48300 -25.06449 -23.92871 -22.44757 -20.52040 -20.04554 -18.64671 -17.21241 -16.45965 -16.34755 -15.58980 -15.50997 -15.17203 -14.56112 -14.33798 -13.84964 -13.65853 -13.51179 -13.29635 -12.81269 -12.69728 -12.48443 -12.42710 -12.13401 -11.94242 -11.79073 -11.43368 -11.24246 -10.93992 -10.54878 -10.43140 -10.31637 -9.04456 -7.88931 -5.21502 -0.32405 0.21215 0.65190 1.50311 1.53974 1.60070 1.73459 2.51076 3.15313 3.28955 3.60168 3.80582 4.04140 4.30369 4.33106 4.49255 4.66672 4.72981 4.78958 4.88724 4.97724 4.98764 5.08737 5.18608 5.20899 5.30715 5.55479 5.74304 6.01779 6.24242 7.08968 7.75868 7.77823 8.18710 9.12233 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.031141 B = 0.007638 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.908649 B = 3665.174663 C = 4026.575221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.040 4.040 3 C -0.039 4.039 4 N -0.301 5.301 5 N -0.303 5.303 6 C -0.021 4.021 7 C 0.213 3.787 8 N -0.584 5.584 9 C -0.265 4.265 10 H 0.087 0.913 11 C -0.044 4.044 12 N -0.912 5.912 13 Si 0.964 3.036 14 H -0.286 1.286 15 H -0.302 1.302 16 H -0.268 1.268 17 C 0.170 3.830 18 C -0.142 4.142 19 S 0.179 5.821 20 H 0.094 0.906 21 H 0.047 0.953 22 H 0.060 0.940 23 H 0.104 0.896 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.087 0.913 27 H 0.249 0.751 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.049 0.951 31 H 0.026 0.974 32 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.559 -4.998 -2.063 12.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 C -0.319 4.319 4 N -0.138 5.138 5 N -0.141 5.141 6 C -0.303 4.303 7 C 0.081 3.919 8 N -0.303 5.303 9 C -0.395 4.395 10 H 0.105 0.895 11 C -0.241 4.241 12 N -0.556 5.556 13 Si 0.792 3.208 14 H -0.213 1.213 15 H -0.229 1.229 16 H -0.192 1.192 17 C 0.045 3.955 18 C -0.202 4.202 19 S 0.423 5.577 20 H 0.113 0.887 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.123 0.877 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -11.335 -4.912 -1.705 12.471 hybrid contribution 1.075 -0.089 -0.225 1.102 sum -10.260 -5.001 -1.929 11.576 Atomic orbital electron populations 1.21740 0.91866 1.03969 1.02139 1.20305 0.97912 0.84713 1.05240 1.29706 1.04670 1.05481 0.92077 1.71261 1.14178 0.99661 1.28704 1.71264 1.16068 1.08124 1.18657 1.31395 0.99991 1.06589 0.92328 1.19906 0.84175 0.87101 1.00677 1.44778 0.99736 1.75328 1.10473 1.19646 0.91258 1.41370 0.87206 0.89541 1.25528 0.97942 1.00489 1.00101 1.70375 1.06743 1.48813 1.29714 0.85334 0.77613 0.77403 0.80408 1.21263 1.22904 1.19220 1.20799 0.94601 0.93379 0.86758 1.22146 0.98461 1.01580 0.97970 1.83321 1.56293 1.05850 1.12193 0.88699 0.93333 0.92084 0.87718 0.88738 0.88717 0.89535 0.94171 0.91570 0.95363 0.93177 0.95444 0.95019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.89 71.98 0.71 -1.74 16 2 C -0.04 -0.91 6.54 29.85 0.20 -0.72 16 3 C -0.04 -1.29 6.78 88.47 0.60 -0.69 16 4 N -0.30 -12.18 11.66 -50.84 -0.59 -12.77 16 5 N -0.30 -13.13 9.88 -50.85 -0.50 -13.64 16 6 C -0.02 -0.83 6.63 88.46 0.59 -0.24 16 7 C 0.21 8.34 6.30 85.63 0.54 8.88 16 8 N -0.58 -27.58 2.52 -706.34 -1.78 -29.36 16 9 C -0.27 -13.31 9.70 84.03 0.82 -12.50 16 10 H 0.09 4.12 7.93 -2.91 -0.02 4.10 16 11 C -0.04 -2.30 4.89 84.86 0.42 -1.88 16 12 N -0.91 -50.64 8.61 21.65 0.19 -50.46 16 13 Si 0.96 42.41 29.62 68.60 2.03 44.44 16 14 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 15 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 16 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 17 C 0.17 8.26 5.64 86.38 0.49 8.75 16 18 C -0.14 -7.12 9.58 71.99 0.69 -6.43 16 19 S 0.18 5.97 23.04 -56.49 -1.30 4.67 16 20 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.09 3.24 8.03 -2.39 -0.02 3.22 16 26 H 0.09 3.16 7.95 -2.39 -0.02 3.14 16 27 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 28 H 0.07 3.55 5.85 -2.39 -0.01 3.53 16 29 H 0.03 1.25 7.98 -2.38 -0.02 1.23 16 30 H 0.05 2.83 6.33 -2.39 -0.02 2.82 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.03 1.57 5.88 -2.39 -0.01 1.55 16 Total: -1.00 -62.33 279.73 4.19 -58.14 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 1.11 Total: 5.55 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 5.04 Total: -6.57 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -2.69 Total: -106.23 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 5.97 SS G_CDS: -1.30 Total: 4.67 kcal Total: -62.33 4.19 -58.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612065636.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.131 kcal (2) G-P(sol) polarization free energy of solvation -62.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds