Wall clock time and date at job start Mon Mar 30 2020 04:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47053 * 2 1 4 4 C 1.50695 * 109.47345 * 239.99518 * 2 1 3 5 5 H 1.07993 * 120.00315 * 335.19047 * 4 2 1 6 6 C 1.37884 * 119.99988 * 155.18605 * 4 2 1 7 7 N 1.31518 * 119.99977 * 355.68488 * 6 4 2 8 8 Si 1.86797 * 119.99950 * 175.40109 * 6 4 2 9 9 H 1.48506 * 109.47000 * 60.00546 * 8 6 4 10 10 H 1.48502 * 109.47142 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47319 * 300.00520 * 8 6 4 12 12 C 1.50701 * 109.46905 * 119.99701 * 2 1 3 13 13 O 1.21276 * 120.00128 * 120.00304 * 12 2 1 14 14 N 1.34782 * 120.00063 * 299.99710 * 12 2 1 15 15 C 1.46497 * 119.99893 * 179.97438 * 14 12 2 16 16 H 1.08994 * 109.73427 * 324.34790 * 15 14 12 17 17 C 1.53368 * 109.73662 * 203.64495 * 15 14 12 18 18 O 1.42894 * 109.27495 * 292.60965 * 17 15 14 19 19 C 1.42887 * 114.49888 * 295.06412 * 18 17 15 20 20 C 1.53365 * 109.27625 * 64.93180 * 19 18 17 21 21 C 1.51505 * 108.09999 * 307.74572 * 20 19 18 22 22 O 1.20760 * 121.21789 * 228.39270 * 21 20 19 23 23 H 1.08999 * 109.47719 * 295.21004 * 1 2 3 24 24 H 1.09005 * 109.47089 * 55.21134 * 1 2 3 25 25 H 1.09006 * 109.47341 * 175.20990 * 1 2 3 26 26 H 0.96993 * 119.99581 * 5.14474 * 7 6 4 27 27 H 0.97001 * 119.99623 * 0.02562 * 14 12 2 28 28 H 1.09001 * 109.50156 * 52.54907 * 17 15 14 29 29 H 1.08999 * 109.50372 * 172.66892 * 17 15 14 30 30 H 1.08999 * 109.50799 * 304.99425 * 19 18 17 31 31 H 1.08996 * 109.54094 * 184.89376 * 19 18 17 32 32 H 1.09000 * 109.73885 * 188.09277 * 20 19 18 33 33 H 1.09004 * 109.77227 * 67.42160 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 1.4120 -1.4464 -1.7201 6 6 3.2840 -0.4208 -1.7309 7 7 4.0051 0.5347 -1.1862 8 14 3.9587 -1.3910 -3.1776 9 1 3.0580 -1.2269 -4.3469 10 1 5.3134 -0.8891 -3.5215 11 1 4.0414 -2.8284 -2.8143 12 6 2.0322 -0.7104 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7066 -0.2498 2.4546 15 6 2.1944 -0.9407 3.6508 16 1 2.2214 -2.0152 3.4699 17 6 1.2709 -0.6371 4.8371 18 8 1.3877 0.7440 5.1845 19 6 2.6761 1.1258 5.6704 20 6 3.7095 0.9601 4.5494 21 6 3.5837 -0.4451 3.9971 22 8 4.5552 -1.1445 3.8384 23 1 -0.3634 0.4377 0.9297 24 1 -0.3633 0.5864 -0.8440 25 1 -0.3634 -1.0241 -0.0858 26 1 3.6893 0.9850 -0.3873 27 1 1.1487 0.5387 2.5435 28 1 0.2397 -0.8570 4.5609 29 1 1.5592 -1.2524 5.6894 30 1 2.9495 0.4920 6.5139 31 1 2.6508 2.1673 5.9910 32 1 4.7127 1.1104 4.9483 33 1 3.5155 1.6851 3.7589 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000628875625.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:49 Heat of formation + Delta-G solvation = -126.489633 kcal Electronic energy + Delta-G solvation = -18051.743030 eV Core-core repulsion = 15077.485013 eV Total energy + Delta-G solvation = -2974.258017 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.38405 -38.34059 -37.81678 -34.14297 -33.69958 -31.67519 -31.04398 -29.22283 -24.64425 -24.16423 -23.90375 -22.58775 -19.88842 -18.99978 -17.27053 -16.64132 -16.45819 -15.88663 -15.80859 -15.30528 -14.76765 -14.23145 -13.98875 -13.66457 -13.56178 -12.88085 -12.71238 -12.53001 -12.16639 -11.92469 -11.66608 -11.31223 -11.01998 -10.89512 -10.68824 -10.10911 -10.02701 -9.85231 -9.74785 -8.83426 -8.53525 -8.35440 -8.27441 -6.37205 -4.08443 1.99097 3.43427 3.48320 3.56149 3.70415 3.71074 3.94746 4.13737 4.53294 4.58007 4.70284 4.86127 4.96478 5.13524 5.33351 5.40476 5.43276 5.64650 5.69878 5.91220 6.13173 6.17352 6.38051 6.47777 6.82776 6.97986 7.01894 7.12356 7.57242 7.90972 8.34223 8.42847 8.83950 9.33548 9.63378 11.01268 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.032594 B = 0.007361 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.841354 B = 3802.749602 C = 4177.469315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.010 3.990 3 H 0.057 0.943 4 C -0.572 4.572 5 H 0.054 0.946 6 C 0.029 3.971 7 N -0.902 5.902 8 Si 1.071 2.929 9 H -0.287 1.287 10 H -0.283 1.283 11 H -0.286 1.286 12 C 0.499 3.501 13 O -0.516 6.516 14 N -0.732 5.732 15 C 0.067 3.933 16 H 0.111 0.889 17 C 0.059 3.941 18 O -0.375 6.375 19 C 0.069 3.931 20 C -0.206 4.206 21 C 0.346 3.654 22 O -0.432 6.432 23 H 0.031 0.969 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.264 0.736 27 H 0.400 0.600 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 2.870 13.775 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.011 4.011 3 H 0.075 0.925 4 C -0.610 4.610 5 H 0.072 0.928 6 C -0.176 4.176 7 N -0.537 5.537 8 Si 0.899 3.101 9 H -0.214 1.214 10 H -0.208 1.208 11 H -0.212 1.212 12 C 0.288 3.712 13 O -0.388 6.388 14 N -0.391 5.391 15 C -0.040 4.040 16 H 0.128 0.872 17 C -0.018 4.018 18 O -0.293 6.293 19 C -0.008 4.008 20 C -0.244 4.244 21 C 0.216 3.784 22 O -0.301 6.301 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.235 0.765 28 H 0.131 0.869 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.243 1.754 12.513 13.328 hybrid contribution -1.215 0.285 1.266 1.778 sum -5.458 2.039 13.779 14.960 Atomic orbital electron populations 1.21650 0.96276 1.00794 0.99425 1.19130 0.93165 0.97726 0.91105 0.92492 1.21589 1.03637 1.25730 1.10013 0.92785 1.25867 0.93546 0.95766 1.02452 1.70840 1.40687 1.21162 1.20978 0.83522 0.76213 0.75850 0.74511 1.21377 1.20814 1.21211 1.23099 0.79062 0.85120 0.83940 1.90585 1.35925 1.26192 1.86061 1.46464 1.55544 1.33026 1.04066 1.22204 0.92604 1.00628 0.88595 0.87157 1.23008 1.00976 0.83011 0.94837 1.87920 1.31413 1.25546 1.84399 1.22616 0.82202 1.01860 0.94080 1.23023 1.02195 0.97762 1.01394 1.25333 0.90972 0.88732 0.73335 1.90425 1.41381 1.58516 1.39820 0.94996 0.92641 0.93615 0.92522 0.76534 0.86924 0.91461 0.92582 0.87591 0.88545 0.87244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 9.11 37.15 0.34 -2.08 16 2 C 0.01 0.25 2.35 -92.93 -0.22 0.03 16 3 H 0.06 1.44 6.69 -51.93 -0.35 1.09 16 4 C -0.57 -16.37 7.55 -34.44 -0.26 -16.63 16 5 H 0.05 1.55 7.81 -52.49 -0.41 1.14 16 6 C 0.03 0.86 5.46 -17.82 -0.10 0.76 16 7 N -0.90 -27.93 13.62 55.43 0.76 -27.17 16 8 Si 1.07 26.65 29.91 -169.99 -5.08 21.57 16 9 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 12 C 0.50 11.98 7.11 -10.98 -0.08 11.90 16 13 O -0.52 -14.89 15.72 5.56 0.09 -14.81 16 14 N -0.73 -13.17 4.95 -54.36 -0.27 -13.44 16 15 C 0.07 1.08 2.90 -68.49 -0.20 0.88 16 16 H 0.11 1.99 7.61 -51.93 -0.40 1.59 16 17 C 0.06 0.65 6.36 37.35 0.24 0.89 16 18 O -0.37 -4.15 10.54 -35.23 -0.37 -4.53 16 19 C 0.07 0.66 6.85 37.35 0.26 0.92 16 20 C -0.21 -2.61 6.40 -27.30 -0.17 -2.79 16 21 C 0.35 5.98 6.39 -28.24 -0.18 5.80 16 22 O -0.43 -9.40 17.91 6.00 0.11 -9.29 16 23 H 0.03 0.50 7.43 -51.93 -0.39 0.12 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.26 8.06 6.67 -40.82 -0.27 7.78 16 27 H 0.40 6.09 7.84 -40.82 -0.32 5.77 16 28 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 30 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 283.61 15.07 4.27 4.27 Total: -1.00 -36.50 283.61 -5.18 -41.69 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.31 Total: 2.02 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -0.38 Total: -0.32 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.49 Total: -40.61 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.18 Total: -28.62 kcal Atomic # 14 Polarization: 26.65 SS G_CDS: -5.08 Total: 21.57 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -36.50 -5.18 -41.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000628875625.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.804 kcal (2) G-P(sol) polarization free energy of solvation -36.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds