Wall clock time and date at job start Mon Mar 30 2020 04:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47053 * 2 1 4 4 C 1.50695 * 109.47345 * 239.99518 * 2 1 3 5 5 H 1.07993 * 120.00315 * 335.19047 * 4 2 1 6 6 C 1.37884 * 119.99988 * 155.18605 * 4 2 1 7 7 N 1.31518 * 119.99977 * 355.68488 * 6 4 2 8 8 Si 1.86797 * 119.99950 * 175.40109 * 6 4 2 9 9 H 1.48506 * 109.47000 * 60.00546 * 8 6 4 10 10 H 1.48502 * 109.47142 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47319 * 300.00520 * 8 6 4 12 12 C 1.50701 * 109.46905 * 119.99701 * 2 1 3 13 13 O 1.21276 * 120.00128 * 120.00304 * 12 2 1 14 14 N 1.34782 * 120.00063 * 299.99710 * 12 2 1 15 15 C 1.46497 * 119.99893 * 179.97438 * 14 12 2 16 16 H 1.08994 * 109.73427 * 324.34790 * 15 14 12 17 17 C 1.53368 * 109.73662 * 203.64495 * 15 14 12 18 18 O 1.42894 * 109.27495 * 292.60965 * 17 15 14 19 19 C 1.42887 * 114.49888 * 295.06412 * 18 17 15 20 20 C 1.53365 * 109.27625 * 64.93180 * 19 18 17 21 21 C 1.51505 * 108.09999 * 307.74572 * 20 19 18 22 22 O 1.20760 * 121.21789 * 228.39270 * 21 20 19 23 23 H 1.08999 * 109.47719 * 295.21004 * 1 2 3 24 24 H 1.09005 * 109.47089 * 55.21134 * 1 2 3 25 25 H 1.09006 * 109.47341 * 175.20990 * 1 2 3 26 26 H 0.96993 * 119.99581 * 5.14474 * 7 6 4 27 27 H 0.97001 * 119.99623 * 0.02562 * 14 12 2 28 28 H 1.09001 * 109.50156 * 52.54907 * 17 15 14 29 29 H 1.08999 * 109.50372 * 172.66892 * 17 15 14 30 30 H 1.08999 * 109.50799 * 304.99425 * 19 18 17 31 31 H 1.08996 * 109.54094 * 184.89376 * 19 18 17 32 32 H 1.09000 * 109.73885 * 188.09277 * 20 19 18 33 33 H 1.09004 * 109.77227 * 67.42160 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 1.4120 -1.4464 -1.7201 6 6 3.2840 -0.4208 -1.7309 7 7 4.0051 0.5347 -1.1862 8 14 3.9587 -1.3910 -3.1776 9 1 3.0580 -1.2269 -4.3469 10 1 5.3134 -0.8891 -3.5215 11 1 4.0414 -2.8284 -2.8143 12 6 2.0322 -0.7104 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7066 -0.2498 2.4546 15 6 2.1944 -0.9407 3.6508 16 1 2.2214 -2.0152 3.4699 17 6 1.2709 -0.6371 4.8371 18 8 1.3877 0.7440 5.1845 19 6 2.6761 1.1258 5.6704 20 6 3.7095 0.9601 4.5494 21 6 3.5837 -0.4451 3.9971 22 8 4.5552 -1.1445 3.8384 23 1 -0.3634 0.4377 0.9297 24 1 -0.3633 0.5864 -0.8440 25 1 -0.3634 -1.0241 -0.0858 26 1 3.6893 0.9850 -0.3873 27 1 1.1487 0.5387 2.5435 28 1 0.2397 -0.8570 4.5609 29 1 1.5592 -1.2524 5.6894 30 1 2.9495 0.4920 6.5139 31 1 2.6508 2.1673 5.9910 32 1 4.7127 1.1104 4.9483 33 1 3.5155 1.6851 3.7589 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000628875625.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:49 Heat of formation + Delta-G solvation = -155.374213 kcal Electronic energy + Delta-G solvation = -18052.995560 eV Core-core repulsion = 15077.485013 eV Total energy + Delta-G solvation = -2975.510546 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.71827 -40.13549 -38.98601 -35.93216 -35.57384 -32.95984 -32.67780 -30.61916 -26.69340 -25.38588 -24.90251 -24.31840 -21.64843 -20.39797 -19.13076 -17.95452 -17.66575 -17.48920 -17.21782 -16.64001 -16.08074 -15.76493 -15.70205 -15.32157 -15.19379 -14.59622 -14.29680 -13.76829 -13.58053 -13.31650 -13.03890 -12.88113 -12.78940 -12.64409 -12.04458 -11.79039 -11.76048 -11.29787 -10.97266 -10.94509 -10.56967 -10.37289 -9.91497 -8.67125 -6.37518 0.59719 1.45822 1.57455 1.73812 1.86635 2.25637 2.53843 2.72241 2.91569 3.23826 3.46704 3.60876 3.91211 4.11264 4.19436 4.28044 4.44485 4.48175 4.57218 4.62576 4.70372 4.82307 4.84058 4.89420 5.24066 5.38264 5.40685 5.87941 6.01856 6.11810 6.22304 6.48425 6.76937 7.40368 7.50771 8.72596 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.032594 B = 0.007361 C = 0.006701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.841354 B = 3802.749602 C = 4177.469315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.000 4.000 3 H 0.047 0.953 4 C -0.584 4.584 5 H 0.046 0.954 6 C -0.025 4.025 7 N -0.932 5.932 8 Si 1.107 2.893 9 H -0.255 1.255 10 H -0.284 1.284 11 H -0.288 1.288 12 C 0.502 3.498 13 O -0.575 6.575 14 N -0.708 5.708 15 C 0.059 3.941 16 H 0.085 0.915 17 C 0.072 3.928 18 O -0.376 6.376 19 C 0.073 3.927 20 C -0.200 4.200 21 C 0.336 3.664 22 O -0.489 6.489 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.040 0.960 26 H 0.253 0.747 27 H 0.417 0.583 28 H 0.134 0.866 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.139 0.861 32 H 0.106 0.894 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.280 3.908 15.420 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.022 4.022 3 H 0.065 0.935 4 C -0.622 4.622 5 H 0.064 0.936 6 C -0.223 4.223 7 N -0.569 5.569 8 Si 0.930 3.070 9 H -0.179 1.179 10 H -0.209 1.209 11 H -0.215 1.215 12 C 0.290 3.710 13 O -0.452 6.452 14 N -0.366 5.366 15 C -0.048 4.048 16 H 0.103 0.897 17 C -0.005 4.005 18 O -0.294 6.294 19 C -0.004 4.004 20 C -0.238 4.238 21 C 0.211 3.789 22 O -0.362 6.362 23 H 0.092 0.908 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.255 0.745 28 H 0.152 0.848 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.156 0.844 32 H 0.125 0.875 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.149 2.856 14.199 15.735 hybrid contribution -0.694 -0.022 0.852 1.099 sum -6.843 2.834 15.051 16.775 Atomic orbital electron populations 1.21557 0.92380 1.01118 1.02058 1.19173 0.96455 0.96399 0.90170 0.93475 1.21994 1.03426 1.25215 1.11536 0.93589 1.27127 0.94353 0.96090 1.04770 1.70952 1.41459 1.22935 1.21523 0.83076 0.76285 0.74353 0.73328 1.17938 1.20935 1.21471 1.22727 0.78306 0.84239 0.85679 1.90564 1.38620 1.28843 1.87177 1.45956 1.54398 1.32992 1.03249 1.22456 0.93805 0.99011 0.89512 0.89738 1.23059 1.00631 0.83733 0.93122 1.87938 1.32015 1.25238 1.84198 1.22851 0.80352 1.04340 0.92853 1.23090 1.04429 0.93887 1.02410 1.26133 0.90542 0.90388 0.71811 1.90407 1.42969 1.60471 1.42370 0.90800 0.91955 0.94069 0.93642 0.74461 0.84774 0.88705 0.90509 0.84356 0.87524 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.22 9.11 71.98 0.66 -3.57 16 2 C 0.00 -0.02 2.35 -12.29 -0.03 -0.05 16 3 H 0.05 2.41 6.69 -2.38 -0.02 2.39 16 4 C -0.58 -33.94 7.55 25.60 0.19 -33.75 16 5 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 6 C -0.02 -1.48 5.46 84.66 0.46 -1.02 16 7 N -0.93 -59.21 13.62 21.45 0.29 -58.92 16 8 Si 1.11 54.36 29.91 68.60 2.05 56.41 16 9 H -0.25 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 11 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 12 C 0.50 24.31 7.11 87.66 0.62 24.93 16 13 O -0.58 -34.38 15.72 -3.02 -0.05 -34.43 16 14 N -0.71 -24.69 4.95 -444.28 -2.20 -26.89 16 15 C 0.06 1.84 2.90 44.63 0.13 1.97 16 16 H 0.08 3.11 7.61 -2.39 -0.02 3.09 16 17 C 0.07 1.32 6.36 72.11 0.46 1.78 16 18 O -0.38 -6.66 10.54 -148.98 -1.57 -8.23 16 19 C 0.07 1.07 6.85 72.10 0.49 1.57 16 20 C -0.20 -4.69 6.40 30.23 0.19 -4.50 16 21 C 0.34 11.58 6.39 29.62 0.19 11.77 16 22 O -0.49 -22.04 17.91 -1.45 -0.03 -22.06 16 23 H 0.07 2.09 7.43 -2.39 -0.02 2.07 16 24 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 25 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.25 15.99 6.67 -92.71 -0.62 15.38 16 27 H 0.42 11.61 7.84 -92.71 -0.73 10.88 16 28 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 1.32 8.13 -2.39 -0.02 1.30 16 30 H 0.08 0.89 8.13 -2.39 -0.02 0.87 16 31 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -83.90 283.61 2.42 -81.48 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.55 Total: 13.48 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 3.37 Total: -0.85 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -1.91 Total: -85.81 kcal Atomic # 8 Polarization: -63.07 SS G_CDS: -1.64 Total: -64.71 kcal Atomic # 14 Polarization: 54.36 SS G_CDS: 2.05 Total: 56.41 kcal Total: -83.90 2.42 -81.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000628875625.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.889 kcal (2) G-P(sol) polarization free energy of solvation -83.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds