Wall clock time and date at job start Mon Mar 30 2020 04:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46643 * 2 1 4 4 C 1.50701 * 109.47007 * 119.99751 * 2 1 3 5 5 H 1.07997 * 119.99981 * 120.00293 * 4 2 1 6 6 C 1.37871 * 120.00148 * 300.00086 * 4 2 1 7 7 N 1.31523 * 120.00124 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00114 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47238 * 60.00246 * 8 6 4 10 10 H 1.48505 * 109.46949 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47175 * 300.00082 * 8 6 4 12 12 C 1.50699 * 109.47354 * 240.00003 * 2 1 3 13 13 O 1.21278 * 119.99861 * 240.00127 * 12 2 1 14 14 N 1.34780 * 119.99924 * 60.00079 * 12 2 1 15 15 C 1.46498 * 119.99980 * 180.02562 * 14 12 2 16 16 H 1.09009 * 109.76724 * 324.32001 * 15 14 12 17 17 C 1.53360 * 109.73817 * 203.63926 * 15 14 12 18 18 O 1.42886 * 109.27793 * 292.60570 * 17 15 14 19 19 C 1.42888 * 114.49711 * 295.06654 * 18 17 15 20 20 C 1.52913 * 109.37047 * 64.78202 * 19 18 17 21 21 C 1.51510 * 109.73819 * 84.99376 * 15 14 12 22 22 O 1.20763 * 121.21585 * 251.23304 * 21 15 14 23 23 H 1.09001 * 109.47103 * 60.00531 * 1 2 3 24 24 H 1.08994 * 109.46941 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47404 * 299.99989 * 1 2 3 26 26 H 0.96999 * 119.99841 * 179.97438 * 7 6 4 27 27 H 0.96998 * 119.99883 * 359.97438 * 14 12 2 28 28 H 1.09008 * 109.50028 * 52.54584 * 17 15 14 29 29 H 1.08997 * 109.50330 * 172.61903 * 17 15 14 30 30 H 1.09001 * 109.50862 * 184.87108 * 19 18 17 31 31 H 1.09002 * 109.50753 * 304.95377 * 19 18 17 32 32 H 1.08995 * 109.67962 * 188.25921 * 20 19 18 33 33 H 1.08993 * 109.55906 * 67.70453 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.8074 -1.1188 4.0078 10 1 1.8268 -0.4197 5.2204 11 1 1.8281 -2.5197 4.0082 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6964 -1.1191 14 7 1.7068 -0.2499 -2.4546 15 6 2.1948 -0.9408 -3.6507 16 1 3.1989 -1.3251 -3.4707 17 6 2.2169 0.0307 -4.8372 18 8 0.8761 0.3818 -5.1844 19 6 0.0857 -0.7051 -5.6698 20 6 -0.1008 -1.7343 -4.5544 21 6 1.2635 -2.0848 -3.9964 22 8 1.5984 -3.2342 -3.8379 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7081 1.1609 3.4844 27 1 1.1489 0.5385 -2.5436 28 1 2.7687 0.9294 -4.5614 29 1 2.7011 -0.4465 -5.6892 30 1 -0.8875 -0.3330 -5.9899 31 1 0.5914 -1.1744 -6.5138 32 1 -0.5750 -2.6295 -4.9566 33 1 -0.7228 -1.3098 -3.7665 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000628875626.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:51 Heat of formation + Delta-G solvation = -123.762849 kcal Electronic energy + Delta-G solvation = -17839.189162 eV Core-core repulsion = 14865.049387 eV Total energy + Delta-G solvation = -2974.139775 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47663 -38.44674 -37.89216 -34.17184 -33.75181 -31.76860 -30.85128 -29.16248 -25.14707 -24.18830 -23.97194 -22.52656 -19.79734 -19.06357 -16.95999 -16.70413 -16.31539 -16.08717 -15.70422 -15.34008 -14.92200 -14.38127 -14.19954 -13.69999 -13.51447 -12.89157 -12.62474 -12.52431 -12.16466 -11.99304 -11.55088 -11.01288 -10.94416 -10.75455 -10.69972 -10.31287 -10.09236 -9.97297 -9.87389 -9.00053 -8.67423 -8.48745 -8.33950 -6.03710 -4.07053 1.87995 3.36971 3.39057 3.40036 3.45883 3.56928 3.87270 4.03704 4.47318 4.47719 4.64238 4.80939 4.90765 5.10531 5.29584 5.29884 5.37099 5.58946 5.63661 5.81630 6.18568 6.59624 6.77654 6.80277 6.87775 6.93096 7.43342 7.47153 7.73947 7.96055 8.10653 8.38820 9.01660 9.14794 9.58566 11.03827 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.040416 B = 0.006166 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.631433 B = 4540.006314 C = 4762.687331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.033 3.967 3 H 0.055 0.945 4 C -0.503 4.503 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.516 3.484 13 O -0.534 6.534 14 N -0.727 5.727 15 C 0.067 3.933 16 H 0.113 0.887 17 C 0.058 3.942 18 O -0.373 6.373 19 C 0.069 3.931 20 C -0.207 4.207 21 C 0.347 3.653 22 O -0.434 6.434 23 H 0.013 0.987 24 H 0.030 0.970 25 H 0.095 0.905 26 H 0.262 0.738 27 H 0.405 0.595 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.750 1.679 -16.224 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.012 3.988 3 H 0.073 0.927 4 C -0.542 4.542 5 H 0.092 0.908 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.305 3.695 13 O -0.408 6.408 14 N -0.385 5.385 15 C -0.040 4.040 16 H 0.131 0.869 17 C -0.019 4.019 18 O -0.291 6.291 19 C -0.008 4.008 20 C -0.245 4.245 21 C 0.218 3.782 22 O -0.304 6.304 23 H 0.032 0.968 24 H 0.049 0.951 25 H 0.113 0.887 26 H 0.071 0.929 27 H 0.241 0.759 28 H 0.133 0.867 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.190 0.605 -15.874 16.035 hybrid contribution 0.021 -0.336 0.786 0.855 sum -2.168 0.269 -15.088 15.246 Atomic orbital electron populations 1.21757 0.96457 0.99779 1.01113 1.18872 0.94186 0.96896 0.88880 0.92704 1.21108 1.31164 1.12879 0.89001 0.90846 1.24940 0.95073 0.95052 0.99098 1.69861 1.36994 1.23058 1.23689 0.86495 0.79306 0.79719 0.81561 1.20160 1.21334 1.20213 1.22245 0.78444 0.84385 0.84388 1.90582 1.37368 1.26469 1.86391 1.46215 1.55982 1.32376 1.03974 1.22223 0.99949 0.93362 0.88493 0.86902 1.23019 0.84390 0.99784 0.94733 1.87944 1.23122 1.33678 1.84378 1.22536 0.96814 0.87380 0.94084 1.22955 0.97792 1.02181 1.01536 1.25338 0.89531 0.90045 0.73242 1.90420 1.76430 1.23358 1.40156 0.96765 0.95119 0.88682 0.92870 0.75928 0.86710 0.91337 0.87526 0.92604 0.88522 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.87 37.16 0.33 -2.70 16 2 C 0.03 0.81 2.64 -92.92 -0.25 0.57 16 3 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 4 C -0.50 -14.39 8.37 -34.44 -0.29 -14.68 16 5 H 0.07 2.23 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.13 11.32 55.43 0.63 -24.51 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.52 11.75 7.11 -10.98 -0.08 11.68 16 13 O -0.53 -14.25 15.14 5.56 0.08 -14.17 16 14 N -0.73 -12.37 4.98 -54.36 -0.27 -12.64 16 15 C 0.07 0.99 2.90 -68.50 -0.20 0.79 16 16 H 0.11 1.86 7.62 -51.92 -0.40 1.47 16 17 C 0.06 0.59 6.36 37.34 0.24 0.83 16 18 O -0.37 -3.87 10.54 -35.23 -0.37 -4.24 16 19 C 0.07 0.59 6.83 37.11 0.25 0.84 16 20 C -0.21 -2.31 6.37 -27.53 -0.18 -2.48 16 21 C 0.35 5.40 6.40 -28.24 -0.18 5.22 16 22 O -0.43 -8.51 17.91 6.00 0.11 -8.41 16 23 H 0.01 0.26 7.56 -51.93 -0.39 -0.14 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.40 5.97 7.90 -40.82 -0.32 5.65 16 28 H 0.11 1.03 8.14 -51.92 -0.42 0.61 16 29 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 30 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 281.23 15.07 4.24 4.24 Total: -1.00 -33.70 281.23 -5.34 -39.04 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.30 Total: 2.05 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.44 Total: 1.61 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.36 Total: -37.14 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.18 Total: -26.82 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -33.70 -5.34 -39.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000628875626.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.719 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds