Wall clock time and date at job start Mon Mar 30 2020 04:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46643 * 2 1 4 4 C 1.50701 * 109.47007 * 119.99751 * 2 1 3 5 5 H 1.07997 * 119.99981 * 120.00293 * 4 2 1 6 6 C 1.37871 * 120.00148 * 300.00086 * 4 2 1 7 7 N 1.31523 * 120.00124 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00114 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47238 * 60.00246 * 8 6 4 10 10 H 1.48505 * 109.46949 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47175 * 300.00082 * 8 6 4 12 12 C 1.50699 * 109.47354 * 240.00003 * 2 1 3 13 13 O 1.21278 * 119.99861 * 240.00127 * 12 2 1 14 14 N 1.34780 * 119.99924 * 60.00079 * 12 2 1 15 15 C 1.46498 * 119.99980 * 180.02562 * 14 12 2 16 16 H 1.09009 * 109.76724 * 324.32001 * 15 14 12 17 17 C 1.53360 * 109.73817 * 203.63926 * 15 14 12 18 18 O 1.42886 * 109.27793 * 292.60570 * 17 15 14 19 19 C 1.42888 * 114.49711 * 295.06654 * 18 17 15 20 20 C 1.52913 * 109.37047 * 64.78202 * 19 18 17 21 21 C 1.51510 * 109.73819 * 84.99376 * 15 14 12 22 22 O 1.20763 * 121.21585 * 251.23304 * 21 15 14 23 23 H 1.09001 * 109.47103 * 60.00531 * 1 2 3 24 24 H 1.08994 * 109.46941 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47404 * 299.99989 * 1 2 3 26 26 H 0.96999 * 119.99841 * 179.97438 * 7 6 4 27 27 H 0.96998 * 119.99883 * 359.97438 * 14 12 2 28 28 H 1.09008 * 109.50028 * 52.54584 * 17 15 14 29 29 H 1.08997 * 109.50330 * 172.61903 * 17 15 14 30 30 H 1.09001 * 109.50862 * 184.87108 * 19 18 17 31 31 H 1.09002 * 109.50753 * 304.95377 * 19 18 17 32 32 H 1.08995 * 109.67962 * 188.25921 * 20 19 18 33 33 H 1.08993 * 109.55906 * 67.70453 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.8074 -1.1188 4.0078 10 1 1.8268 -0.4197 5.2204 11 1 1.8281 -2.5197 4.0082 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6964 -1.1191 14 7 1.7068 -0.2499 -2.4546 15 6 2.1948 -0.9408 -3.6507 16 1 3.1989 -1.3251 -3.4707 17 6 2.2169 0.0307 -4.8372 18 8 0.8761 0.3818 -5.1844 19 6 0.0857 -0.7051 -5.6698 20 6 -0.1008 -1.7343 -4.5544 21 6 1.2635 -2.0848 -3.9964 22 8 1.5984 -3.2342 -3.8379 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7081 1.1609 3.4844 27 1 1.1489 0.5385 -2.5436 28 1 2.7687 0.9294 -4.5614 29 1 2.7011 -0.4465 -5.6892 30 1 -0.8875 -0.3330 -5.9899 31 1 0.5914 -1.1744 -6.5138 32 1 -0.5750 -2.6295 -4.9566 33 1 -0.7228 -1.3098 -3.7665 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000628875626.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:50 Heat of formation + Delta-G solvation = -149.593088 kcal Electronic energy + Delta-G solvation = -17840.309245 eV Core-core repulsion = 14865.049387 eV Total energy + Delta-G solvation = -2975.259858 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.70144 -40.13235 -38.94329 -35.83953 -35.61409 -32.74585 -32.64949 -30.54315 -27.22136 -25.32201 -24.86166 -24.22534 -21.44953 -20.34652 -18.44888 -18.20293 -17.59832 -17.33932 -17.24953 -16.59293 -16.45430 -15.76895 -15.56473 -15.19986 -15.06487 -14.45391 -14.29544 -13.57343 -13.50204 -13.27389 -13.00083 -12.87919 -12.68689 -12.61350 -12.25210 -12.03387 -11.73336 -11.27621 -11.08256 -10.91572 -10.63594 -10.36764 -9.91102 -8.17439 -6.27826 0.63341 1.39446 1.40702 1.49528 1.79605 2.24927 2.45756 2.77433 2.95631 3.12143 3.50114 3.65681 3.97975 4.17097 4.20730 4.32285 4.48426 4.62968 4.72634 4.76110 4.89318 4.91392 4.94456 4.99781 5.36825 5.47110 5.72398 5.90768 6.07622 6.17980 6.26363 6.65968 6.81157 7.35460 7.45855 8.88075 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.040416 B = 0.006166 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.631433 B = 4540.006314 C = 4762.687331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.027 3.973 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.044 0.956 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.271 1.271 11 H -0.280 1.280 12 C 0.518 3.482 13 O -0.582 6.582 14 N -0.703 5.703 15 C 0.058 3.942 16 H 0.089 0.911 17 C 0.070 3.930 18 O -0.378 6.378 19 C 0.070 3.930 20 C -0.200 4.200 21 C 0.342 3.658 22 O -0.486 6.486 23 H 0.057 0.943 24 H 0.017 0.983 25 H 0.073 0.927 26 H 0.266 0.734 27 H 0.420 0.580 28 H 0.131 0.869 29 H 0.096 0.904 30 H 0.137 0.863 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.842 2.901 -17.841 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.006 3.994 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.196 1.196 11 H -0.205 1.205 12 C 0.308 3.692 13 O -0.460 6.460 14 N -0.360 5.360 15 C -0.049 4.049 16 H 0.107 0.893 17 C -0.008 4.008 18 O -0.295 6.295 19 C -0.007 4.007 20 C -0.238 4.238 21 C 0.216 3.784 22 O -0.358 6.358 23 H 0.076 0.924 24 H 0.036 0.964 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.258 0.742 28 H 0.148 0.852 29 H 0.114 0.886 30 H 0.155 0.845 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.321 1.892 -17.536 17.948 hybrid contribution 0.347 -0.697 1.233 1.458 sum -2.974 1.195 -16.303 16.615 Atomic orbital electron populations 1.21569 0.94830 0.99209 1.02156 1.18809 0.95454 0.96159 0.88946 0.93274 1.21249 1.31904 1.12797 0.91335 0.93762 1.25546 0.95142 0.95727 1.01245 1.69924 1.36894 1.23361 1.24476 0.85690 0.78713 0.78637 0.79058 1.20194 1.19559 1.20550 1.21829 0.78038 0.83624 0.85738 1.90563 1.39644 1.28533 1.87310 1.45791 1.54870 1.32203 1.03165 1.22498 0.98649 0.94639 0.89099 0.89321 1.23054 0.85135 0.99306 0.93274 1.87957 1.23039 1.34315 1.84235 1.22783 0.98376 0.86364 0.93158 1.23011 0.94529 1.03813 1.02412 1.26008 0.91308 0.89159 0.71878 1.90407 1.77703 1.25237 1.42503 0.92419 0.96353 0.90812 0.92445 0.74188 0.85154 0.88570 0.84490 0.90674 0.87203 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 8.87 71.98 0.64 -4.75 16 2 C 0.03 1.38 2.64 -12.29 -0.03 1.35 16 3 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 4 C -0.53 -31.43 8.37 25.60 0.21 -31.21 16 5 H 0.04 2.81 6.75 -2.91 -0.02 2.79 16 6 C 0.02 1.30 5.30 84.65 0.45 1.75 16 7 N -0.91 -50.74 11.32 21.45 0.24 -50.49 16 8 Si 0.95 45.50 29.54 68.60 2.03 47.52 16 9 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 12 C 0.52 24.00 7.11 87.66 0.62 24.62 16 13 O -0.58 -32.36 15.14 -3.02 -0.05 -32.41 16 14 N -0.70 -23.24 4.98 -444.28 -2.21 -25.45 16 15 C 0.06 1.66 2.90 44.62 0.13 1.79 16 16 H 0.09 3.00 7.62 -2.38 -0.02 2.98 16 17 C 0.07 1.20 6.36 72.10 0.46 1.66 16 18 O -0.38 -6.24 10.54 -148.98 -1.57 -7.81 16 19 C 0.07 0.89 6.83 71.95 0.49 1.38 16 20 C -0.20 -3.93 6.37 30.08 0.19 -3.73 16 21 C 0.34 10.36 6.40 29.62 0.19 10.55 16 22 O -0.49 -19.44 17.91 -1.46 -0.03 -19.46 16 23 H 0.06 2.03 7.56 -2.39 -0.02 2.01 16 24 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 26 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 27 H 0.42 11.39 7.90 -92.71 -0.73 10.66 16 28 H 0.13 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.10 1.20 8.13 -2.39 -0.02 1.19 16 30 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 0.73 8.13 -2.39 -0.02 0.71 16 32 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -75.88 281.23 2.16 -73.72 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.39 Total: 11.00 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 3.35 Total: 3.38 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -1.97 Total: -75.95 kcal Atomic # 8 Polarization: -58.03 SS G_CDS: -1.64 Total: -59.68 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -75.88 2.16 -73.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000628875626.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.876 kcal (2) G-P(sol) polarization free energy of solvation -75.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds